FACULTY PROFILE

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FACULTY PROFILE

1.Name: Dr. N.K. Lokanath

2.Designation: Professor

3. Qualification: M.Sc. Ph.D.

4. Area of Specialization: Protein Crystallography hairman/Member of Authority/Committee etc:

Sl.

No.

Chairman/Member/Secretary

1 Member

Committee/Authority

BOS in Microbiology

Year (From-To)

-2008

Articles in Journal:

1.

High-throughput crystallization-to-structure pipeline at RIKEN SPring-8 Center:

Sugahara M, Asada Y, Shimizu K, Yamamoto H, Lokanath NK , Mizutani H,

Bagautdinov B, Matsuura Y, Taketa M, Kageyama Y, Ono N, Morikawa Y, Tanaka Y,

Shimada H, Nakamoto T, Sugahara M, Yamamoto M, Kunishima N. J Struct Funct

Genomics . 9 (2008) 21-28.

2.

Crystallization and preliminary X-ray diffraction studies of SDiA from Escherechia coli :

Wu CA, Lokanath NK , Kim DY, Nguyen LD, Kim KK. Acta Crystallogr F Biol

Crystallogr ., 64 (2008) 19-21.

3.

Crystal structures of NTPase from Pyrococcus horikoshii OT3 and its complexes: recognition of dinucleotide binding sites: Lokanath NK , Pampa KJ, Takio K, Kunishima

N. J. Mol. Biol. 375 (2008) 1013-1025.

4.

Purification, crystallization and preliminary X-ray diffraction studies of a putative UDP-

N -acetyl-D-mannosamine dehydrogenase from Pyrococcus horikoshii OT3: Lokanath

NK , Pampa, KJ, Kamiya, T, Kunishima N. Acta Crystallogr F Biol Crystallogr ., 63

(2007) 412-414.

5.

Dimeric core structure of modular stator subunit E of archaeal H

+

-ATPase. Lokanath

NK , Matsuura Y, Kuroishi C, Takahashi N, Kunishima N. J. Mol Biol . 366 (2007) 933-

944.

6.

Purification, crystallization and preliminary X-ray crystallographic analysis of the archaeal phosphoglycerate mutase PH0037 from Pyrococcus horikoshii OT3: Lokanath

NK , Kunishima N. Acta Crystallogr F Biol Crystallogr ., 62 (2006) 788-790.

7.

Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp . NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions: Manikandan K, Bhardwaj A,

Gupta N, Lokanath NK , Ghosh A, Reddy VS, Ramakumar S. Protein Sci . 2006 15,

1951-1960.

8.

Purification, crystallization and initial X-ray crystallographic analysis of the putative

GTPase PH0525 from Pyrococcus horikoshii OT3: Lokanath NK , Yamamoto H,

Matsunaga E, Sugahara M, Kunishima N. Acta Crystallogr F Biol Crystallogr ., 61 (2005)

892-894.

9.

Structure of inorganic pyrophosphatase from Helicobacter pylori : Wu CA, Lokanath

NK , Kim D, Park HJ, Hwang HJ, Kim ST, Suh SW, Kim KK. Acta Crystallogr D Biol

Crystallogr ., D61 (2005), 1459-1464.

10.

Crystal structure of Novel NADP-dependent 3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8: Lokanath NK , Shiromizu I, Nodake Y, Sugahara, M,

Yokoyama S, Kuramitsu S, Miyano, M, Kunishima N. J. Mol Biol . 352 (2005) 905-917.

11.

The target of RNAIII-activating protein (TRAP) from Staphylococcus aureus : purification, crystallization and preliminary X-ray analysis: Han YH, Kim YG, Kim DY,

Ha, SC, Lokanath NK , Kim KK . Biochim Biophys Acta . 1748(1) 2005 134-136.

12.

Purification, crystallization and preliminary crystallographic analysis of the vacuole-type

ATPase subunit E from Pyrococcus horikoshii OT3: Lokanath NK , Ukita Y, Sugahara

Y, Kunishima N Acta Crystallogr F Biol Crystallogr ., 61 (2005) 56-58.

13.

Crystal structure of Glycine Cleavage System: T-protein from Pyrococcus horikoshii OT3 at 1.5 Å resolution: Lokanath NK , Kuroishi C, Okazaki N, Kunishima

N. Proteins 58 (2004) 769-773.

14.

A poxvirus protein forms a complex with left-handed Z-DNA: crystal structure of a

Yatapoxvirus Zα bound to DNA: Ha SC, Lokanath NK , Van Quyen D, Wu CA,

Lowenhaupt K, Rich A, Kim YG, Kim KK. Proc. Natl. Acad. Sci. U S A . 101 (2004)

14367-14372.

15.

Crystal structure of alodolase from Thermus thermophilus HB8 showing contribution of oligomeric state to thermostability: Lokanath NK , Shiromizu I, Ohshima N, Nodake Y,

Sugahara, M, Yokoyama S, Kuramitsu S, Miyano M, Kunishima N. Acta Crystallogr D

Biol Crystallogr ., 60 (2004) 1816-1823.

16.

Purification, crystallization and preliminary crystallographic analysis of the glycinecleavage system component T-protein from Pyrococcus horikoshii OT3: Lokanath NK ,

Kuroishi C, Okazaki N, Kunishima N Acta Crystallogr D Biol Crystallogr ., 60 (2004)

1450-1452.

17.

Crystallization and preliminary X-ray crystallographic studies of NADP-dependent 3hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8: Lokanath NK ,

Shiromizu I, Nodake Y, Sugahara, M, Yokoyama S, Kuramitsu S, Miyano M, Kunishima

N. Acta Crystallogr D Biol Crystallogr ., 59 (2003) 2294-2296.

18.

Crystal structure of the protease domain of a heat-shock protein HtrA from Thermotoga maritima : Kim DY, Kim DR, Ha SC, Lokanath NK , Lee CJ, Hwang HY, Kim KK. J

Biol Chem ., 278 (2003) 6543-6551.

19.

Structural studies on C-2 substitution in a new set of synthetic aminodideoxy sugars: the steric bulk at C-2 influences the puckering of the pyranose ring: Suresh CG, Ravindran B,

Pathak T, Rao K, Shashidhara Prasad J, Lokanath NK.

Carbohydr Res ., 337 (2002)

1507-1512.

20.

Cloning, purification, crystallization and preliminary X-ray studies of RFC boxes II-VIII of replication factor C from Methanococcus jannaschii : Lee I, Lokanath NK , Min K, Ha

SC, Kim DY, Kim KK, Acta Crystallogr D Biol Crystallogr ., 58 (2002) 519-521. *

21.

Photoreduction of benzophenone analogues by alcohol and ether self recognition and molecualr assemblies: Mallesha H, Dinesha ND, Rangappa KS, Shashikanth

S, Lokanath NK , Sridhar MA, Shashidhara Prasad J, Ind. J. Chem ., 41B (2002) 196-200.

22.

Crystal structure of bis(diphenylphosphino)ethane bis(2selenopyridinato)platinum(II). Lokanath NK , Devarajegowda HC, Sridhar MA,

Shashidhara Prasad J, Narayan S, Jain VK. Anal Sci ., 17 (2001) 565-566.

23.

Crystal structure of diphenyl pyraline tetrachloroferrate: Lokanath NK , Sridhar MA,

Shashidhara Prasad J, Ramappa PG. Anal Sci., 17 (2001) 1135-1136.

24.

Crystal structure of a cholesterol based dimesogen: Sridhar MA, Lokanath NK ,

Shashidhara Prasad J, Yelammagad CV, Varshney SK, Liq. Cryst ., 28 (2001) 45-49.

25.

Synthesis and crystal structure of 1,3-dimethyl benzotriazolium trifluoromethane sulfonate: Rangappa KS, Mallesha H, Anil Kumar NV, Lokanath NK , Sridhar MA,

Shashidhara Prasad J, Mol. Cryst. Liq. Cryst ., 357 (2001) 291-298.

26.

Crystal structure of undecyloxybenzoic acid: Lokanath NK , Revannasiddaiah D, Sridhar

MA, Shashidhara Prasad J, Mol. Cryst. Liq. Cryst ., 357 (2001) 299-304.

27.

Crystal and molecular structure of 3,5,6-trichloro-2-pyridinol complexes: Sridhar

MA, Lokanath NK , Shashidhara Prasad J, Akmal Pasha, Mol. Cryst. Liq. Cryst ., 369

(2001) 153-165.

28.

Crystal structure of 4-n-Nonylbenzoic acid: Lokanath NK , Revannasiddaiah D, Sridhar

MA and Shashidhara Prasad J, Liq. Cryst ., 27 (2000) 767-774.

29.

Crystal structure of octyloxybenzoic acid: Lokanath NK , Revannasiddaiah D, Sridhar

MA and Shashidhara Prasad J, Mol. Cryst. Liq. Cryst ., 348 (2000) 7-13.

30.

Synthesis and structural characterization of Na

2

MnP

2

O

7

crystal: Lokanath NK , Sridhar

MA, Shashidhara Prasad J, Gopalakrishna GS, Ashamanjari KG, J. Mat. Sci. Letts ., 23

(2000) 175-178.

31.

Structural studies of some phenoxazine derivatives: Sridhar MA, Ramegowda

M, Lokanath NK , Shashidhara Prasad J, Ere Gowda GB, Thimmaiah, KN, Mol.Cryst.

Liq. cryst ., 312 (1999) 189-214.

32.

Silicagel support mediated nonphotolytic cleavage of the rhenium-rhenium bond of

[{NC

5

H

4

N = NC

6

H

4

(R)}(CO)

3

Re0]

2

. Synthesis of the monomeric species Re1{NC

5

H

4

N

= NC

6

H

4

(R)}(CO)

3

Cl, crystal structure, spectroscopic and electron-transfer properties:

Samanta R, Munshi P, Santra B.K, Lokanath NK , Sridhar M.A, Shashidhara Prasad J,

Lahiri GK, J.

Organometllic Chem ., 579 (1999) 311-320.

33.

Synthesis and structural characterization of (Na

2

CoP

2

O

7

)

2

crystal: Lokanath NK , Sridhar

MA, Shashidhara Prasad J, Gopalakrishna GS, Ashamanjari KG, J. Mat. Sci. Letts ., 18

(1999) 1723-1726.

34.

Structure of 2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9-hexadecafluorodecyl 1,10-ditosylate by X-ray crystallography and 19F-NMR spectroscopy: Soma De, Lokanath NK , Sridhar MA,

Shashidhara Prasad J, Venkatesan K, Bhattacharya S, J. Mol. Str ., 479 (1999) 75-81. *

35.

Crystal and molecular structure of dibromamine-T: Yathirajan HS, Rangappa KS,

Nagendra P, Mohana KN, Sridhar MA, Lokanath NK , Shashidhara Prasad J, Ind. J.

Chem ., 38A (1999) 1169-1172.

36.

Crystal structure of di-(2,7-disubstituted-9 fluorenyl) glutamate: Surendranath

V, Lokanath NK , Sridhar MA, Shashidhara Prasad J, Liq. Cryst ., 24 (1998) 361-368.

37.

Crystal structure of (2,4-dichlorophenoxy)acetohydrazide: Lokanath NK , Sridhar MA,

Shashidhara Prasad J, Nagaraja HS, Mohan Rao P, Acta Crystallogr ., C54 (1998) 669-

670.

38.

Syntheses, structure, reactivity and species recognition studies of oxo-vanadium(V) and molybdenum(VI) complexes: Rao CP, Sreedhara A, Rao PV, Bindu Verghese M,

Rissanen K, Kolehmainen E, Lokanath NK , Sridhar MA, Shashidhara Prasad J, J.

Chem. Soc ., Dalton Trans. (1998) 2383-2393.

39.

Crystal structure of two triazoles: Sridhar MA, Lokanath NK , Shashidhara Prasad J,

Rangappa KS, Anil Kumar NV, Bhadre Gowda DG, Mol. Cryst. Liq. Cryst ., 319 (1998)

137-146.

40.

Crystal and molecular structure studies of some organic haloamines: Lokanath NK ,

Sridhar MA, Shashidhara Prasad J, Yathirajan HS, Mohana KN, Rangappa KS, Mol.

Cryst. Liq. Cryst ., 319 (1998) 271-290.

41.

Recognition of oxovanadium(V) species and its separation from other metal species through selective complexation by some acyclic ligands: Rao CP, Sreedhara A,

Venkateswara Rao P, Lokanath NK , Sridhar MA, Shashidhara Prasad J, Kari

Rissanen, Polyhedron , 18 (1998) 289-297.

42.

Crystal structure of octyl benzoic acid: Lokanath NK , Krishne Gowda D,

Revannasiddaiah D, Abdoh MMM, Sridhar MA, Shashidhara Prasad J, Mol. Cryst. Liq.

Cryst ., 312 (1998) 153-164.

43.

Crystal structure of 4-(4'-chlorophenyl)-2,6-dimethyl-3,5-dimethoxy carbonyl-1,4dihydro pyrridine: Lokanath NK , Sridhar MA, Shashidhara Prasad J, Maitreya Joshi,

Dharmendra A Thaker, Anamik Shah, Z. Kristallogr ., 212 (1997) 13-14.

44.

Crystal structure of 3-(6H-dibenzo[b,e]thiepin-11-ylidene) propyl-dimethyl amine hydrochloride-cobalt chloride complex: Lokanath NK , Sridhar MA, Shashidhara Prasad

J, Bhojya Naik HS, Ramappa PG, Z. Kristallogr ., 212 (1997) 15-16.

45.

Crystal structure of metaclopromide-manganese chloride complex: Lokanath NK ,

Sridhar MA, Shashidhara Prasad J, Z. Kristallogr ., 212 (1997) 19-20.

46.

Crystal structure of 10-(3'-N-morpholinopropyl)-2-trifluoro phenoxazine hydrochloride: Lokanath NK , Sridhar MA, Shashidhara Prasad J, Rame Gowda M,

Eregowda GB, Thimmaiah KN, Z. Kristallogr ., 212 (1997) 21-22.

47.

Crystal structure of 10-(3'-chloropropyl)-2-chlorophenoxazine: Rame Gowda

M, Lokanath NK , Sridhar MA, Shashidhara Prasad J, Eregowda GB, Thimmaiah KN, Z.

Kristallogr ., 212 (1997) 23-24.

48.

Crystal structure of 10-(N-piperdino acetyl)-2-trifluromethyl phenoxazine: Lokanath

NK , Rame Gowda M, Sridhar MA, Shashidhara Prasad J, Eregowda GB, Thimmaiah

KN, Z. Kristallogr ., 212 (1997) 25-26.

49.

Crystal structure of 10-(3'-N-morpholinopropyl)-2-trifluoro methyl phenoxazine: Rame

Gowda M, Lokanath NK , Sridhar MA, Shashidhara Prasad J, Eregowda GB, Thimmaiah

KN, Z. Kristallogr ., 212 (1997) 27-28.

50.

Crystal structure of N-[O-anisole] anthranilic acid: Lokanath NK , Sridhar MA,

Shashidhara Prasad J, Bhadre Gowda DG, Rangappa KS, Z. Kristallogr ., 212 (1997) 29.

51.

Crystal structure of 1-benzyl-1,2,3-triazole: Sridhar MA, Lokanath NK , Shashidhara

Prasad J, Bhadre Gowda DG, Rangappa KS, Z. Kristallogr ., 212 (1997) 30.

52.

Crystal structure of 1-(anilino)-1(-phenyl methylino)penta carbonyl chromium: Lokanath NK , Sridhar MA, Shashidhara Prasad J, Manjunatha Swamy,

Rangappa KS, Z. Kristallogr ., 212 (1997) 31-32.

53.

Crystal structure of 1-methyl-3-phenyl-1,2,3-triazolinium perchlorate: Sridhar

MA, Lokanath NK , Shashidhara Prasad J, Bhadre Gowda DG, Rangappa KS, Z.

Kristallogr ., 212 (1997) 33-34.

54.

Crystal structure of N-p-methoxybenzylidene p-phenylazoaniline: Revannasiddaiah

D, Lokanath NK , Krishne Gowda D, Sridhar MA, Shashidhara Prasad J, Z. Kristallogr .,

212 (1997) 387-388.

55.

Crystal structure of 4-cyanophenyl 4-heptylbenzoate: Lokanath NK , Revannasiddaiah

D, Krishne Gowda D, Sridhar MA, Shashidhara Prasad J, Z. Kristallogr ., 212 (1997) 385-

386.

56.

Crystal structure of 1-benzyl-4-phenyl-1,2,3-triazole: Lokanath NK , Sridhar MA,

Shashidhara Prasad J, Bhadre Gowda DG, Rangappa K.S, Z. Kristallogr ., 212 (1997) 35-

36.

57.

Crystal structure of 4-isothiocyanatophenyl 4-pentylbicyclo [2,2,2] octane-1-carboxylate:

Sridhar MA, Lokanath NK , Revannasiddaiah D, Shashidhara Prasad J, Mol. Cryst.

Liq .

Cryst ., 299 (1997) 509-515.

Papers in Conference / Conference/Seminar participated:

(1)First crystal structure of the 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase: Lokanath NK,

Nakamura M, Ohshima N, Takio, K, Kunishima N. Fifth East Asian Biophysics Symposium &

Forty-Fourth Annual Meeting of the Biophysical Society of Japan (EABS & BSJ), 12-16

November, 2006, Okinawa, Japan.

(2)Crystal structure of modular stator subunit E of archaeal ATPase from pyrococcus horikoshii

OT3: Lokanath NK, Kuroishi C, Sugahara M, Kunishima N. Amercan Crystallographic

Association (ACA), 22-27 July, 2006 Honolulu, Hawaii, USA.

(3)The fourth international workshop on X-ray damage to biological crystalline samples, 7-8

March, 2006, SPring-8, Japan.

(4)Crystal Structure of Novel NADP-dependent 3-hydroxyisobutyrate dehydrogenase from

Thermus thermophilus HB8: Lokanath NK, Ohshima N, Takio K, Shiromizu I, Kuroishi C,

Okazaki N, Kuramitsu S, Yokoyama S, Miyano M, Kunishima N. XX Congress of the

International Union of Crstallography (IUCr), 23-31 August, 2005 Firenze, Italy.

(5)Crystal structure of Glycine Cleavage System: T-protein from Pyrococcus horikoshii OT3 at

1.5 Å resolution: Lokanath NK, Kuroishi C, Okazaki N, Kunishima N The Third International

Conference on Structural Genomics, 17-21 November, 2004 Washington DC, USA.

(6)Crystal structure of Malate dehydrogeanse from Pyrococcus horikoshii OT3 revealed a new type of NADP folding: Lokanath NK, Fujimoto Y, Kumei M, Kunishima N. The Eighth

Conference on Biology and Synchrotron Radiation, 7-11 September, 2004, Himeji, Japan.

(7)Annual Meeting of Structural-Biological Whole Cell Project of Thermus thermophilus HB8,

30 July - 1st August, 2004, SPring-8, Japan.

(8)Crystal structure of NADP-dependent 3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8: Lokanath NK, Ohshima N, Uchida Y, Shiromizu I, Sugahara, M, Kunishima

N. Second International Symposium "Current Trends in Drug Discovery & Research", 17-20

February, 2004, CDRI, Lucknow, India.

-glucosidase at atomic resolution  (9)Structure of and complex with glucose: Lokanath NK,

Shiromizu I, Matsunaga E, Tanaka T, Kunishima N. The First Pacific-Rim International

Conference on Protein Science, 14-18 April, 2004, Pacifico Yokohama, Japan.

(10)RIKEN/BBSRC Symposium of Japan-UK Protein Structural Biology, 11-12 September,

2003, SPring-8, Japan.

(11)Annual Meeting of Structural-Biological Whole Cell Project of Thermus thermophilus HB8,

1-3 August, 2003, SPring-8, Japan.

(12)Crystal structure of alodolase from Thermus thermophilus HB8 showing contribution of oligomeric state to thermostability: Lokanath NK, Shiromizu I, Matsunaga E, Tanaka T,

Kunishima N. International symposium on Diffraction Structural Biology, 28th May-2nd June,

2003, Tsukuba, Japan.

(13)The Eighth Harima International Forum of Structural Biology of Biological Machinary, 19-

20 March, 2003, SPring-8, Japan.

(14)Structure of NADP-dependent 3-hydroxyisobutyrate dehydrogenase: Lokanath NK and

Kunishima N. Annual Meeting of Structural-Biological Whole Cell Project of Thermus thermophilus HB8, 26-27 July, 2002, SPring-8, Japan.

(15)Structure of ribosome recycling factor with different ligands: Lokanath NK, Jin-hee Joeng,

Chunai-Wu, Kyeong Kyu Kim. The Fourth Asian Crystallography Association, 18-21

November, 2001, Bangalore, India.

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