Author’s response to reviews Title: Patients with hepatic breast cancer metastases demonstrate highly specific profiles of matrix metalloproteinases MMP-2 and MMP-9 after SIRT treatment as compared to other prima y and secondary liver tumours Authors: Olga Golubnitschaja (olga.golubnitschaja@ukb.uni-bonn.de) Kristina Yeghiazaryan (kristina.yeghiazaryan@ukb.uni-bonn.de) Helena Stricker (helena.stricker@t-online.de) Daniela Trog (daniela.trog@gmx.de) Hans Schild (schild@uni-bonn.de) Leonard Berliner (leonardb23@aol.com) Version: 1 Date: 10 Mar 2016 Author’s response to reviews: Reviewer 1: The authors highly appreciate the overall comments and recommendations of the expert. In particular, we are very glad to know that our findings have been found interesting and valuable. Further, we are glad to provide below summarized responses to the individual points listed in the report. 1. The authors should explain why they pick up MMP-2 and -9 although MMP-2 and -9 are implicated in cancer metastasis, while not others. It will be nice if the authors could also test the expression levels/activities of the other MMPs, which on one hand will provide a more complete picture of MMPs family profiles in hepatic breast cancer metastasis, on the other hand, would prove the specificity of changing of MMP-2 and -9. The authors highly appreciate the recommendation to make the choice of the molecular targets clearer for the readers. Indeed, our working hypothesis focused on both gelatinases A and B (MMP-2 and -9, respectively), due to their specific role which has been clearly demonstrated by number of studies for tumour development/progression and metastatic disease. Corresponding paragraph (marked in red colour) is included into the revised version of the manuscript now (see “Background” pages 5-6). In contrast, it was not the purpose of the current project to test the whole spectrum of metalloproteinases as potential target-candidates, since according to the project’s philosophy, an application of each target should be properly justified considering its individual function in the relevant (patho)mechanisms. Corresponding hypothesis should be, further, created for this kind of additional experiments. This is also an issue for the project-relevant ethical considerations. Concretely, the responsible Ethical Commission of the University of Bonn, where the experiments have been effectively performed, requires clear justification for any measurement to be performed utilising human samples, in order to approve the project’s performance. Contextually, the “protein family of proteases degrading the ECM” is not considered as targeted enough to satisfy the ethical considerations of the research project. 2.In the current manuscript, the authors only use one assay to test the MMP-2 and -9, it would be more convincing if the authors can combine another assay such as ELISA to further confirm at least one time point of MMP2 and -9 levels in the serum samples. To this end, we would like to make a note that the patterns of activities of both MMP-2 and -9 are regulated by many molecular mechanisms applied via a cascade of individual steps including transcription, translation, several events of post-translational modification and, finally, MMPactivity inhibition by TIMPs. In this comprehensive situation, it is very difficult to expect a linear correlation between expression rates (e.g. measured by ELISA) and levels of activity (Zymography used in the project). From the entire regulation cascade, the “end-product”, namely effective activity levels of both molecular targets have the highest relevance for biological aspects of the processes and their clinical utility. This paragraph is included into the revised manuscript now, in order to make the experimental design clearer for the readers (see “Background” pages 5-6). 3.Could the up-regulation of MMP-2 and -9 after SIRT treatment shows any correlation with patient outcome? This is a very good question planned to be clarified during the extended future project. 4.The data should be reorganized to be more neat and clear. It is not suggested that one figure is separated into different parts. Certainly, the issue is very important, since the diagrams are crucial for the understanding of the “Results”! However, the form of the figure presentation depends very much on the final version of the paper design, which the journal may propose us at the stage of production. Since we fully trust in the excellent capacity of “BMC Cancer” to support the most appropriate presentation of our highly comprehensive diagrams, would consult the issue with the journal’s production team accordingly. 5.There are some typos in the manuscripts. Page 5, line 83, resent publications should be recent….; page 15, line 286, dies not should be does not. The spelling has been corrected correspondingly. 6.Suggesting the authors shorten the discussion part. The authors have thoroughly analysed the suggestion to shorten the “Discussion”. However, a consensus has been built that current version reflects field’s related challenges in the most optimal way contextually placing the reported findings, in order to support better understanding the key-messages of the current paper.