Introduction Bio-Rad’s 2-D SDS-PAGE standards are Introduction formulated to provide a two-dimensional Bio-Rad’s 2-D SDS-PAGE standards are protein pattern with detection either by silver or protein formulated to provide a two-dimensional Coomassie pattern withstaining. detection either by silver or Coomassie The standardstaining. proteins are defined by isolectric point (pl) and molecular weight. Added to the The standard proteins are defined by isolectric sample, used toweight. determine pls to and point (pl)they and are molecular Added the molecular weights of sample proteinspls orand to serve sample, they are used to determine as a marker for 2-Dofgel matching. Theorcharactermolecular weights sample proteins to serve istic pattern of main and minor spots each as a marker for 2-D gel matching. Theofcharacterstandard protein makes to of identify istic pattern of main andthem minoreasy spots each among sample standard proteinspots. makes them easy to identify among sample spots. In addition, the standards can be used alone as an internal control for reproducibility of 2-D In addition, the standards can be used alone as experiments or to test ampholyte mixtures. an internal control for reproducibility of 2-D experiments or to advantage test ampholyte The most striking of themixtures. standards is that valid comparison of 2-D The they mostallow striking advantage of the standards is electrophoretic patterns betweenof different that they allow valid comparison 2-D laboratories. electrophoretic patterns between different 2-D SDS-PAGE Standards, Specifications 2-D SDS-PAGE Standards, pl range 4.5 to 8.5 Specifications Molecular weight pl range range Molecular weight Contents range Contents Volume Shipping Volume Storage Shipping Storage Shelf life Applications per vial Shelf life Applications per vial 4.5 to 8.5 17,500 to 76,000 Hen egg white conalbumin type 1 17,500 serum to 76,000 Bovine albumin (BSA) Hen egg white actin conalbumin type 1 Bovine muscle Bovine serum (BSA) 3-phosphate Rabbit muscle albumin glyceraldehyde Bovine muscle actin dehydrogenase (GAPDH) Rabbit carbonic muscle glyceraldehyde 3-phosphate Bovine anhydrase dehydrogenase Soybean trypsin (GAPDH) inhibitor Bovine carbonic anhydrase Equine myoglobin 9Soybean M urea trypsin inhibitor Equine myoglobin 5% 2-mercaptoethanol 9 MBio-Lyte urea ® 5/7 ampholyte 2% 5% 2-mercaptoethanol Distilled water ® 5/7 2% Bio-Lyte ampholyte 500 µl solution, ready to use Distilled water 4°C 500 µl solution, ready to use -20°C 4°C Aliquoting is recommended prior to freezing. Frequent -20°C freeze/thaw procedures should be avoided. Aliquots Aliquoting is recommended prior to week freezing. Frequent can be stored at 4°C for about one freeze/thaw procedures shouldthe be 2-D avoided. Aliquots Important! Always vortex SDS-PAGE can be stored atstandards 4°C for about one weekor after thawing Important! Always vortex 2-D SDS-PAGE refrigerating to the resuspend the urea standards after thawing or One year refrigerating resuspendstain the urea 200 (2.5 µl per mini gel) usingtoCoomassie One year 1,000 (0.5–2.5 µl per mini gel) using silver stain 200 (2.5these µl peramounts mini gel)for using Coomassie stain cm) Double full-length gels (16–20 1,000 (0.5–2.5 µl per mini gel) using silver stain Double these amounts for full-length gels (16–20 cm) laboratories. Bio-Rad Laboratories, Inc. 2000 Alfred Nobel Dr., Hercules, CA 94547 USA Bio-Rad Laboratories, Inc. (510) 741-1000 4110064 Rev A 2000 Alfred Nobel Dr., Hercules, CA 94547 USA (510) 741-1000 4110064 Rev A Instruction Manual Instruction Manual 2-D SDS-PAGE 2-D SDS-PAGE Standards Standards Bio-Rad Laboratories, Inc. 2000 Alfred Nobel Dr., Hercules, CA 94547 USA Bio-Rad Laboratories, Inc. (510) 741-1000 4110064 Rev A 2000 Alfred Nobel Dr., Hercules, CA 94547 USA (510) 741-1000 4110064 Rev A Instruction Manual Instruction Manual 2-D SDS-PAGE 2-D SDS-PAGE Standards Standards Ordering Information Catalog # Description Ordering Information 161-0320 2-D SDS-PAGE Standards Catalog # Description 161-0303 SDS-PAGE Standards, high range 161-0320 2-D SDS-PAGE Standards 161-0304 SDS-PAGE Standards, low range 161-0303 SDS-PAGE Standards, high range 161-0363 Precision Plus Protein™ Unstained Standards 161-0304 SDS-PAGE Standards, low range 161-0373 Precision Plus Protein ™ All Blue Standards 161-0363 Precision Plus Protein Unstained Standards 161-0374 Precision Plus Protein Dual Color Standards 161-0373 Precision Plus Protein All Blue Standards 161-0374 Precision Plus Protein Dual Color Standards Catalog # Description Ordering Information 161-0320 2-D SDS-PAGE Standards Catalog # Description 161-0303 SDS-PAGE Standards, high range 161-0320 2-D SDS-PAGE Standards 161-0304 SDS-PAGE Standards, low range 161-0303 SDS-PAGE Standards, high range 161-0363 Precision Plus Protein™ Unstained Standards 161-0304 SDS-PAGE Standards, low range 161-0373 Precision Plus Protein All Blue Standards 161-0363 Precision Plus Protein™ Unstained Standards 161-0374 Precision Plus Protein Dual Color Standards 161-0373 Precision Plus Protein All Blue Standards 161-0374 Precision Plus Protein Dual Color Standards Ordering Information Two-Dimensional Electrophoretic Protein Pattern Molecular weights 8.5 7.0 5.9 6.6 5.5 5.1 4.5 pl values of standard proteins Protein spots 1 Conalbumin 76,000 66,200 2 43,000 2 BSA 1 3 Actin 3 36,000 31,000 4 5 17,500 4 GAPDH 5 Carbonic anhydrase 21,500 6 7 6 Trypsin inhibitor 7 Myoglobin Two-dimensional electrophoretic protein pattern of 2-D SDS-PAGE standards separated in the Mini-PROTEAN II cell. 2.5 µl of the standards were run according to the method of Klose (Klose J, Humangenetik 26, 231–243, 1975; Klose K and Feller M, Electrophoresis 2, 12–24, 1981; Jungblut PR and Seifert R, J Biochem Biophys Methods 21, 47–58, 1990) Protein Molecular Weights and Isoelectric Points (pl) Protein Molecular Weight pl Reference Protein Molecular Weight pl Reference Hen egg white conalbumin type 1 76,000 6.0 6.3 6.6 Cavorta P, et al., Experientia 34, 849–850 (1978) Bovine carbonic anhydrase 31,000 5.9 6.0 Bovine serum albumin (BSA) 66,200 5.4 5.6 Brown JR, Fed Proc 34, 591 (1975) Bovine muscle actin 43,000 5.0 5.1 The running pi value of muscle actin has been empirically determined. Ashworth RB, et al., Arch Biochem Biophys 142, 122–131 (1971) Jonsson M and Petterson E, Acta Chem Scand, 22, 712–713 (1986) Davis RP, Carbonic Anhydrase, p. 545–564 in The Enzymes, Vol V, 2nd edn (Boyer PD, ed), Academic Press, New York (1971) 4.5 36,000 8.3 8.5 Smith CM and Velick SF, J Biol Chem 247, 273–284, (1972) Soybean trypsin Inhibitor 21,500 Rabbit muscle GAPDH Catsimpoulas N and Leuthner E, Anal Biochem 31, 437–447 (1969) Wu YV and Scheraga HG, Biochemistry 1, 698–705 (1962) Equine myoglobin 17,500 7.0 Salaman MR and Williamson AR, Biochem J 122, 93–99 (1971)