Open PHACTS
Deliverable 2.5.1
Demonstrate initial version of conceptexploration GUI
Prepared by SIB, NBIC
Approved by UNIMAN, Janssen, HLU, VUA, PFIZER, CD, RSC,
SIB, NBIC
August, 2012
Version 1.0
Project title:
An open, integrated and sustainable chemistry, biology and pharmacology
knowledge resource for drug discovery
Instrument: IMI JU
Contract no: 115191
Start date:
Duration:
01 March 2011
3 years
Nature of the Deliverable
Report
Prototype
Other
Dissemination level
Public dissemination level
For internal use only
x
x
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© Copyright 2011 Open PHACTS Consortium
Open
PHACTS
Deliverable: Demonstrate initial version of
concept-exploration GUI
Deliverable: 2.5.1
IMI - 115191
Authors: Christine Chichester (SIB)
Version: 1.0
2/4
Definitions

Partners of the Open PHACTS Consortium are referred to herein according to the
following codes:
Pfizer – Pfizer limited – Coordinator
UNIVIE – Universität Wien – Managing entity of IMI JU funding
DTU – Technical University of Denmark – DTU
UHAM – University of Hamburg, Center for Bioinformatics
BIT – BioSolveIT GmbH
PSMAR – Consorci Mar Parc de Salut de Barcelona
LUMC – Leiden University Medical Centre
RSC – Royal Society of Chemistry
VUA – Vrije Universiteit Amsterdam
CNIO – Spanish National Cancer Research Centre
UNIMAN – University of Manchester
UM – University of Maastricht
ACK – ACKnowledge
USC – University of Santiago de Compostela
UBO – Rheinische Friedrich-Wilhelms-Universität Bonn
AZ – AstraZeneca
GSK – GlaxoSmithKline
Esteve – Laboratorios del Dr. Esteve, S.A.
Novartis – Novartis
ME – Merck Serono
HLU – H. Lundbeck A/S
E.Lilly – Eli Lilly

Grant Agreement: The agreement signed between the beneficiaries and the IMI JU
for the undertaking of the Open PHACTS project.

Project: The sum of all activities carried out in the framework of the Grant
Agreement.

Work plan: Schedule of tasks, deliverables, efforts, dates and responsibilities
corresponding to the work to be carried, out as specified in the Grant Agreement.

Consortium: The Open PHACTS Consortium composed of the above-mentioned
legal entities.

Project Agreement: Agreement concluded amongst Open PHACTS participants for
the implementation of the Grant Agreement. Such an agreement shall not affect the
parties’ obligations to the Community and/or to one another arising from the Grant
Agreement.
__________________________________________________________________________
© Copyright 2011 Open PHACTS Consortium
Open
PHACTS
Deliverable: Demonstrate initial version of
concept-exploration GUI
Deliverable: 2.5.1
IMI - 115191
Authors: Christine Chichester (SIB)
Version: 1.0
3/4
1 ConceptWiki GUI for concept exploration
The ConceptWiki is accessed from the Open PHACTS explorer search box (figure 1.1). In
the Explorer dropdown menu that appears during the search process, each concept is
followed by a linked “definition“. Clicking this link brings the user to the ConceptWiki interface
as shown in the screenshot 1.2. From the ConceptWiki interface other concepts in the
ConceptWiki can be accessed via the search capabilities by clicking “Search“ at the top of
the page.
1.1 Definition link from Explorer to ConceptWiki
1.2 ConceptWiki interface
__________________________________________________________________________
© Copyright 2011 Open PHACTS Consortium
Open
PHACTS
Deliverable: Demonstrate initial version of
concept-exploration GUI
Deliverable: 2.5.1
IMI - 115191
Authors: Christine Chichester (SIB)
Version: 1.0
4/4
Concept synonyms are listed along with the authoritative source that supplied them. The
bold type indicates that the term is the preferred term for the specific authority. If a definition
is available it is also shown on this interface.
1.3 ConceptWiki editing
The edit button at the top of the page is clicked and the term can be selected for editing (or
deletion) in the community branch only. The authority branches remain unchanged.
After the edit, the save button is clicked. The edit is saved and denoted by a superscript over
the community branch indicator.
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© Copyright 2011 Open PHACTS Consortium