Diversity of Zooxanthellae from Scleractinian Corals of One Tree Island (The Great Barrier Reef) William Loh 1,2, Deirdre Carter 1 and Ove HoeghGuldberg2 1 2 The Department of Microbiology, The University of Sydney, NSW 2006 The School of Biological Sciences, The University of Sydney, NSW 2006 ABSTRACT The small subunit ribosomal gene (18S rDNA) of zooxanthellae from 19 species of Australian Pacific scleractinian corals was amplified using algae-specific PCR primers. Preliminary results of the restriction fragment length polymorphism (RFLP) profiles obtained by digestion of these PCR products by a single restriction enzyme, indicate that three recognised clades of zooxanthellae (A, B and C) are present. Clade C was detected in 18 species of corals but in two of these species, Acropora longicyathus and Pavona decussata, other clades were also found. Acropora longicyathus has either clade A or C depending on the colony. Pavona decussata produced an unusual RFLP profile indicating that it had a mixture of clade B and C. Plesiastrea versipora, which was the only coral species taken from a temperate region in our study, appears to host clade B zooxanthellae exclusively. Results from this preliminary study suggest that clade C is the predominant zooxanthella group in corals of One Tree Island. INTRODUCTION Scleractinian corals, and invertebrates from at least five other phyla, play host to dinoflagellate symbionts belonging to the genus Symbiodinium (Fruedenthal, 1962). These protists, which are known as zooxanthellae, live intracellularly (except in tridacnid clams) and provide for a major portion of the energy needs of the host (Trench, 1979; Muscatine et al., 1984; HoeghGuldberg et al., 1986). Until the early 1980s, most zooxanthellae were considered to belong to the species Symbiodinium microadriaticum. Detailed work by Schoenberg & Trench (1980a; b; c) and Trench & Blank (1987), however, provided strong morphological and biochemical (isozyme analysis) evidence for the existence of different zooxanthella taxa associated with specific coral hosts. These initial observations have recently been supported by molecular analysis of the small subunit ribosomal RNA gene, which revealed three major groupings or clades of Symbiodinium designated A, B and C (Rowan & Powers, 1991a). Although many coral species studied are specific for one of these clades, combinations of A and C, B and C or all three clades have been detected in some Caribbean coral species (Rowan & Powers, 1991a; Rowan & Knowlton, 1995; Baker & Rowan, 1997; Rowan et al., 1997). Variation in host specificity for these zooxanthellar clades may be an adaptation by the corals to different environmental conditions, such as levels of ambient light (Buddemeier & Fautin, 1993). Two species, Montastrea annularis and M. faveolata, have been shown to contain combinations of A, B and C at varying ratios depending on the colony (Rowan & Knowlton, 1995; Rowan et al., 1997). Clades A and B are detected mostly from colonies or parts of colonies at depths of 0-6 m whereas clade C is present at all depths and is often the only clade detected at depths greater than 6 m (Rowan & Knowlton, 1995; Rowan et al., 1997). This distribution appears to be directly related to sunlight levels, as large columns of M. annularis colonies present at intermediate depths, have clade A and B predominantly in their topmost In: Greenwood, J.G. & Hall, N.J., eds (1998) Proceedings of the Australian Coral Reef Society 75th Anniversary Conference, Heron Island October 1997. School of Marine Science, The University of Queensland, Brisbane. pp. 87-??. Loh, Carter & Hoegh-Guldberg areas but relatively more of clade C on the relatively less sunlit flanks. When these coral columns were experimentally oriented by 90°, a subsequent redistribution of the various clades to their original distribution occurred after six months (Rowan et al., 1997). Another Caribbean species, Acropora cervicornis has colonies that contain either clade A or C (Baker et al., 1997). This species also shows a depth /ambient light relationship with their zooxanthellae, with clade A detected exclusively in colonies at 0-9m, and clade C in the lower light conditions at 15 m (Baker et al., 1997). A greater understanding of the diversity of zooxanthellae and their inherent physiological diversity may help to explain why some coral-zooxanthellae associations are more susceptible to bleaching stress than others (Hoegh-Guldberg & Salvat, 1995; Rowan et al., 1997). Clade C, to date, is the most common symbiont detected in corals sampled from the Caribbean, and hitherto the only clade found in corals of the Central and Eastern Pacific (Hawaiian and Panamanian coasts respectively) (Rowan & Powers, 1991a; Baker & Rowan, 1997). Many more studies on coral biogeography of zooxanthellae clade-specificity are needed to develop theories for coral-algae ecology and evolution (Baker & Rowan, 1997). This study represents a survey from the western Pacific, of 18 species from The Great Barrier Reef and a single temperate water species from Sydney Harbour. MATERIALS AND METHODS Zooxanthellae cultures Zooxanthellae strains CS-153, CS-156 and CS-164 were purchased from the CSIRO microalgae culture collection (CSIRO Marine Laboratories, Australia). These strains originate from Cassiopeia xamachana (class Scyphozoa), Montipora verrucosa (order Scleractinia) and Aiptasia tagetes (order Actininaria) respectively. Batches (10 ml) of culture were grown in f/2 medium (Guillard & Ryther, 1962) at 26°C with a 12:12 h dark-light cycle (50-100 mEm-²s-¹). Two weeks after inoculation, the cells were harvested by centrifugation at 12g and processed for DNA extraction. Collection of corals Samples of scleractinian corals were collected at depths ranging from 0-5m, at One Tree Island (latitude 23°30’S, longitude 152°06’E) on the southern Great Barrier Reef, Australia, in July 1996 and March 1997. The exception was Plesiastrea versipora, which was collected from Sydney Harbour, Australia, from a depth of 5m. The species and number of replicate colonies (n) collected were from Pocilloporidae (Pocillopora damicornis Linnaeus n = 20, Stylophora pistillata Schweigger n=20, Seriatopora hystrix Dana n=6), Acroporidae (Acropora pulchra Brook n=2, A. humilis Dana n=1, A. bushyensis Veron & Wallace n=3, A. divaricata Dana n=9, A. valida Dana n=3, A. nasuta Dana n=1, A. longicyathus Edwards & Haime n=5), Poritidae (Goniopora tenuidens Quelch n=9, Porites lobata Dana n=3), Agariciidae (Pavona decussata Dana n=10), Fungiidae (Heliofungia actiniformis Quoy & Gammard n=10), Oculinidae (Acrhelia horrescens Edwards & Haime n=3), Mussidae (Lobophyllia hemrichii Ehrenberg n=2), Faviidae (Plesiastrea versipora Lamarck n=5, Leptastrea purpurea Dana n=3, Echinopora hirsutissima Edwards & Haime n=1). Where possible, pieces were removed from tips and stems of branching corals, or in massive and encrusting corals, the top, mid and base parts of the colony. Coral samples were placed in 88 ACRS Proceedings - 75th Anniversary Conference Diversity of zooxanthellae from scleractinian corals buffer (DNAB- 0.4M NaCl, 50 mM EDTA, pH 8.0) (Rowan & Powers, 1991b) and frozen at -20°C until processed for DNA extraction. Extraction of DNA The harvested zooxanthellae cultures were resuspended in 500 ml of DNAB with 1 % sodium dodecyl sulphate (SDS). Pieces of coral from each colony were pulverized with separate sterile mortars and pestles. The ensuing slurries were collected and SDS was added at a final concentration of 1%. All cells (cultures and slurries) were lysed by incubation at 65°C for one hour, followed by the addition of Proteinase K (Sigma, U.S.A.) to a final concentration of 0.5 mgml-¹ and further overnight incubation at 37°C. Lysates were then extracted with equal volumes of phenol, followed by phenol-chloroform (25:24) and chloroform-isoamyl alcohol (25:1). DNA was precipitated with equal volumes of 4M lithium chloride (pH 9.0) and double volumes of cold isopropanol. The precipitate was cleaned with 70% ethanol, dried, resuspended in 50 ml of sterile MQ water, and stored at -70°C. PCR amplification and characterisation of zooxanthella DNA Zooxanthellae 18SrDNA was amplified using the algae-specific primers ss5z (an equimolar mixture of 5'-GCAGTTATAATTTATTTGATGGTCACTGCTAC-3' and 5'-GCAGTT ATAATTTATTTGATGGTTGCTGCTAC-3') and the complimentary primer ss3z (5'-AGCACTGCGTCAGTCCGAATAATTCACCGG-3') (Rowan & Powers, 1991a; b). We use, the term ‘algae-specific primers’ instead of ‘zooxanthellae-specific primers’, following the misgivings of its use by McNally et al. (1994). All PCR reactions contained 0.4 mg of template DNA, 10mM total dNTP, 40 mg DNAasefree Bovine serum albumin (Pharmacia), 30 pmol of each primer and 0.5 ml of Taq polymerase (Ampli-Taq, Perkin Elmer) in a total volume of 100 ml. Amplifications were performed using a Perkin Elmer-Cetus 480 Thermal cycler with the following thermal profile: 35 cycles of 1 min at 94°C, 2min at 55°C, 3 min at 72°C. The PCR product was analysed by electrophoresis in 1% agarose gels (10 V.cm-¹; 40 mA). The DNA was stained with ethidium bromide and visualized with UV transillumination. RFLP analysis was performed on the amplified products by digestion with Taq 1 restriction enzyme (Progen Industries, Australia) for 30 min at 65°C. Digests were analysed by electrophoresis as described above. RESULTS PCR amplification of each of the cultures using the ss5z/ss3z primer pair, produced a DNA fragment of approximately 1 600 bp (Figure 1), in accordance with the size of zooxanthellae DNA amplified by Rowan & Powers (1991a; b) using the same primers. Digestion of the amplified DNA with Taq 1 yielded fragments of approximately 710 and 600 base pairs from zooxanthella CS-153, 890 and 500 base pairs from zooxanthella CS-164 and 890 and 710 base pairs from zooxanthella CS-156 (Figure 2). These RFLP profiles were consistent with fragment sizes reported by (Rowan & Powers, 1991a) of zooxanthellae belonging to clades A, B and C respectively, following digestion by the same enzyme. The RFLP profiles produced by Taq 1 digestion were always reproducible and consistent and provided the study with control profiles for the three clades. ACRS Proceedings - 75th Anniversary Conference 89 Loh, Carter & Hoegh-Guldberg 1 600 bp M 1 2 3 Figure 1. Agarose gel electrophoresis showing a DNA fragment of approximately 1 600 bp produced following PCR amplification of zooxanthellae DNA, using primers ss5z and ss3z. DNA amplified from cultured zooxanthellae CS-153 of C. xamachana (lane 1), CS-164 of A. tagetes (lane 2) and CS-156 of Montipora verrucosa (lane 3). The molecular size marker was Spp1/EcoR1 digest (lane M). 890 bp 710 bp 600 bp 500 bp 1 2 3 Figure 2. Agarose gel electrophoresis showing RFLP profiles produced from the amplified 1 600 bp fragments following digestion with Taq 1. The fragment sizes are indicated on the gel. Digested DNA amplified from zooxanthella CS-153 (lane 1): 710 and 600 bp (clade A); zooxanthella CS-164 (lane 2): 890 and 500 bp (clade B); zooxanthella CS-156 (lane 3): 890 and 710 bp (clade C). 90 ACRS Proceedings - 75th Anniversary Conference Diversity of zooxanthellae from scleractinian corals L. hemrichii P. versipora L. purpurea E. hirsutissima A. horescens P. decussata A. nasuta A. longicyathus G. tenuidens P. lobata H. actiniformis A. valida P. damicornis S. pistillata S. hystrix A. pulchra A. humilis A. bushyensis A. divaricata DNA extracted from all corals was amplified with the algae-specific primers producing the expected 1 600 bp fragment (Figure 3). The consistency of this result indicated that DNA amplified was from Symbiodinium of symbiotic origin in the corals. However, a non-specific PCR product of approximately 1 160 bp was also consistently amplified from some colonies of P. decussata and L. purpurea (Figure 3). 1 600 bp M 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 Figure 3. Agarose gel electrophoresis showing the 1 600 bp fragment produced, using algae specific primers ss5z and ss3z. Each numbered lane (1-19) contains the PCR product from a representative coral colony belonging to the species marked above. Non-specific amplification fragment of approximately 1 160 bp present in lanes 14 and 18. The molecular size marker was Spp1/EcoR1 digest (lane M). Amplified zooxanthellae DNA from 16 out of 19 coral species produced a RFLP profile consistent with clade C ( 890 and 710 bp fragments) (Figure 4, lanes 1-16). Of these, atypical clade C RFLP profiles were observed in P. damicornis (additional 550 and 350 bp fragments) (Figure 4, lane 1); A. bushyensis and A. divaricata (additional 350 bp fragment) (Figure 4, lanes 6 & 7); L. purpurea (additional 680 & 480 bp fragments) (Figure 4, lane 15). The P. damicornis RFLP profile appears identical to those from the same species obtained from the mid-Pacific (Rowan & Powers, 1991a; b). Using sequencing data, Rowan & Powers (1991a) established that this RFLP profile probably comes from clade C zooxanthellae containing DNA with an extra Taq 1 site. The larger 980 bp fragment observed in lanes 2 and 11 of Figure 4 were not consistent, and probably represent partial digestion fragments. Of the remaining coral species analysed, both A. longicyathus and P. decussata appeared to contain clade C and/or non-C clade zooxanthellae. The RFLP profiles derived from amplified fragments from five colonies of A. longicyathus suggest that either clade A or C zooxanthella are present in mutual exclusion (three colonies with 710 and 600 bp fragments- clade A; two colonies with 890 and 710 bp fragments- clade C) (Figure 5, lanes 2-6). RFLP profiles from P. decussata indicate a superimposition of clade B and C profiles and may be interpreted as a mixture of clades B and C in each coral sample (ten colonies with the 890,710 and 500 bp fragments) (Figure 5, lanes 10-12). Arguably, this unusual RFLP profile could be derived from the digestion of the non-specific 1 160 bp PCR product (Figure 3, lane 14). Further analysis involving the cloning and sequencing of the DNA is needed to confirm this result. ACRS Proceedings - 75th Anniversary Conference 91 L. hemrichii L. purpurea E. hirsutissima A. horescens A. nasuta G. tenuidens P. lobata H. actiniformis A. valida A. divaricata S. pistillata S. hystrix A. pulchra A. humilis A. bushyensis P. damicornis Loh, Carter & Hoegh-Guldberg 890 bp 710 bp 550 bp 350 bp M 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 C Figure 4. Agarose gel electrophoresis showing clade C RFLP profiles produced by digestion with Taq 1. Each numbered lane (1-16) contains the RFLP profile produced from a representative coral colony belonging to the species marked above. Clade C RFLP profile control (lane C) was produced from cultured zooxanthella CS-156 of Montipora verrucosa. The molecular size marker was Spp1/EcoR1 digest (lane M). A. longicyathus P. versipora P. decussata 890 bp 710 bp 600 bp 500 bp M 1 2 3 4 5 A B C 6 7 8 9 10 11 12 13 Figure 5. Agarose gel electrophoresis showing the comparison of RFLP profiles produced by digestion with Taq 1 restriction enzyme. Each numbered lane contains digested DNA from one coral colony. Clade A or C RFLP profiles in Acropora longicyathus (lanes 1-5); Clade B and C (superimposed RFLP profiles) in Pavona decussata (lanes 6-8); Clade B RFLP profile in Plesiastrea versipora (lanes 9-13). Clade A, B and C control RFLP profiles (lanes A, B and C). The molecular size marker was Spp1/EcoR1 digest (lane M). Plesiastrea versipora was the only host species where the clade C RFLP profile was not detected. RFLP profiles derived from this host suggest that a pure population of clade B zooxanthellae was present (five colonies with 890 and 500 bp fragments) (Figure 5, lanes 9-13). A summary of all coral species surveyed and their clades is presented in Table 1. 92 ACRS Proceedings - 75th Anniversary Conference Diversity of zooxanthellae from scleractinian corals Table 1. Summary of coral species and associated zooxanthella clades. Figures in parenthesis indicate the number of replicate colonies. Coral species Pocillopora damicornis (20) Stylophora pistillata (20) Seriatopora hystrix (6) Acropora pulchra (2) Acropora humilis (1) Acropora bushyensis (3) Acropora divaricata (9) Acropora valida (3) Acropora nasuta (1) Acropora longicyathus (5) Goniopora tenuidens (9) Porites lobata (3) Heliofungia actiniformis (10) Pavona decussata (3) Achrelia horescens (3) Lobophyllia hemrichii (2) Plesiastrea versipora (5) Leptastrea purpurea (3) Echinopora hirsutissima (1) Zooxanthella Clade RFLP detected C C C C C C C C C A or C C C C B and C C C B C C DISCUSSION The predominance of clade C in corals of One Tree Island is consistent with previous studies undertaken of several different eastern Pacific coral species (Rowan & Powers, 1991a; Baker & Rowan, 1997). However, clades A and B detected in colonies of A. longicyathus, P. decussata and P. versipora demonstrate that non-C symbioses can also occur in the Pacific. The mutually exclusive host-clade specificity in A. longicyathus is similar to the species A. cervicornis (Baker et al., 1997). However, unlike the latter species, both clades A or C were detected in shallow water colonies (from 0-2 m) and a depth/light based distribution of clades is not readily apparent in this coral species. Conceivably, the clade B and C zooxanthellae of P. decussata may have a sunlight-related distribution similar to M. annularis (Rowan et al., 1997). Colonies of P. decussata often consist of numerous closely spaced, bifacial and upright laminae. As a result, much of the colony surface is self-shading and it is conceivable that the distribution of clade B and C may vary with amount of exposure to light. Initial studies have revealed light distributions within colonies that range from 10-20 to 2000 µE m-2 s-1 within the same colony (Hoegh-Guldberg et al., unpubl. data). Plesiastrea versipora is unusual because its distribution extends from the tropics to temperate habitats off southeastern Australia (Squires, 1966). It is interesting to note that the zooxanthellae of the only other temperate scleractinian to be sampled so far, Astrangia dane, also contains clade B zooxanthellae exclusively (Rowan & Powers, 1991a; b). Although clade B is also found in many tropical corals of the Caribbean (Rowan & Powers, 1991a; b; Baker & Rowan, 1997), this clade may be more able to form symbioses with temperate water hosts. ACRS Proceedings - 75th Anniversary Conference 93 Loh, Carter & Hoegh-Guldberg Unpublished results of an ongoing survey conducted at the northern Great Barrier Reef (Lizard Island) showed that A. longicyathus, P. decussata and P. versipora contained clade C zooxanthellae exclusively (Baker, pers. comm.). These differences suggests that biogeography of the hosts may also determine the specificity and distribution of the zooxanthellae clades. Conversely, P. damicornis colonies from One Tree Island show similar RFLP profiles to those from the mid Pacific, which suggests that clade specificity can also be constant over long distances. The distribution of clades among corals of One Tree Island is not fully explicable at present, but differences in the range and types of habitats penetrated by zooxanthellae and their hosts probably relate to the physiological abilities of the symbiont. Studies of the photobiology of hermatypic corals and clams and their symbionts suggest distinct light-adaptive zooxanthellabased abilities (Chang et al., 1983; Iglesias-Prieto & Trench, 1994). Analysing how the different clades respond to different physiological challenges may reveal why clade C is generalist, and why the distribution of clades like B extends to temperate environments. The results of this study on zooxanthellae diversity are preliminary. They are based on RFLP profiles produced from only one restriction enzyme digestion. Moreover, several species such as A. pulchra, A. humilis, L. hemrichii and E. hirsutissima were replicated only once or not at all, and different clades may be present in other colonies. This paper, however, foreshadows work that is currently being undertaken to provide firmer conclusions based on digestion with at least one other restriction enzyme (e.g. Sau 3A l, Rowan & Powers, 1991a), direct sequencing, and subsequent phylogenetic analyses. Early sequencing results of our 18SrDNA PCR products from P. damicornis, H. actiniformis, S. pistillata, S. hystrix, G. tenuidens and A. longicyathus confirm the clade identity shown by respective RFLP profiles. Preliminary evidence suggests a strong trend for clade C predomination in the few scleractinian corals surveyed along the Australian Pacific coast. REFERENCES Baker, A.C. & Rowan, R. (1997) Diversity of symbiotic dinoflagellates (zooxanthellae) in scleractinian corals of the Caribbean and Eastern Pacific. 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