Unit Outline Clinical Biochemistry 234 Administrative Details Unit

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Unit Outline

Clinical Biochemistry 234

Administrative Details

Unit Index No

Credit points

Study Package No:

311410

25 (upon passing).

173299 (2009-2011) and 311376 (from 2012 and on)

Responsible School

Pre-requisites

Anti-requisites

Study Mode

Unit Significance

Result Type

Ancillary Charges

Web site Unit materials

Student consultations

Unit Coordinator

Biomedical Sciences

Successful completion of Biochemistry 231 or 233, and the first year of the course (173299 or 31176).

None

On Campus

Core

Grade/Mark

None

For on-line materials, Blackboard.

Contact the Unit Coordinator (see below)

Dr Cyril Mamotte

Address Room 308.207

School of Biomedical Sciences, Curtin University of Technology

GPO Box U1987, PERTH WA 6845

Email: C.Mamotte@curtin.edu.au

Phone: 08 92667517 Fax: 08 92662342

Syllabus: Anabolic pathways. Integration and organisation of metabolism and discussion of metabolic disease. Peptide, thyroid and steroid hormones, their receptors and mechanisms of action. Diagnostic enzymology and the role of clinical biochemistry in evaluating hepatic, renal, respiratory and thyroid function.

Important Dates

Assessment of practicals (worth 20% of final mark).

See page 8 for dates

Tests during the semester (2 x 1 h test, worth 20% of the final mark)

See page 8 for dates

Final written exam (worth 40% of the final mark)

During the University’s official exam period

CONTENTS

Page

Aims

Unit Learning Outcomes and Measuring Achievement of Unit Outcomes

Unit Materials

Unit Outline

Textbooks and References

Web-Based Resources

Journals

3

3

Unit Delivery 4

Study Load

Tuition Pattern

Lecture attendance

Case studies

Practicals

Assessment Format 5

Assessment Details 5

University and School Policies 6-7

Supplementary Examinations

Deferred Assessments

Mobile Phones

Plagiarism Policy

Copyright

Academic Misconduct

Student Charter

Grievance Procedures

Lecture/Practical Programme/Time table (topics and dates) 9

Appendix I (AdditionaltTextbook descriptions/details) 10

3

Please read this outline fully before commencing your study in this unit.

The Unit Outline is an important reference point for your study programme. It contains important information about the general aims of the unit, texts and references, and details about the assessment process, including allocation of marks, grading criteria and submission dates.

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Aims

Clinical Biochemistry 234 (Clin Biochem 234) serves as an introduction to clinical biochemistry, that area of pathology and laboratory medicine which is concerned with the analysis of various fluids (e.g. blood, plasma or serum, urine, CSF) or tissues and cells using chemical or biochemical techniques. The syllabus covers numerous aspects pertinent to understanding of clinical biochemistry, spanning the physiological chemistry of glucose and fat metabolism, to more applied aspects such as the conduct and interpretation of biochemical tests for diagnosis of a myocardial infarction, and in the assessment of liver, renal, thyroid and adrenal disease.

Unit Learning Outcomes (ULO)

1.

ULO1. Interpret common clinical biochemistry tests used for assessment of cardiovascular, renal, liver, and endocrine diseases in the context of physiological and patho- physiological processes.

2.

ULO2. Demonstrate knowledge of the physico-chemical principles underlying assays for urea and electrolytes, blood gases, plasma proteins, cardiac enzymes, and liver function tests.

3.

ULO3. Organise (retrieve, assimilate, and evaluate) information pertinent to clinical biochemistry and demonstrate self-directed learning: a willingness to learn, question, and enquire.

4.

ULO4. Demonstrate practical skills in performance of common clinical chemistry tests including urea and electrolytes, blood gases, plasma proteins, cardiac enzymes, and liver function tests.

Measuring achievement of ULO

Through assessment by lecturer/tutor of:

Interpretation of patient data from practicals/tests and exams (ULO 1).

Solving of problems posed in practical excercises and in tests and exams (ULO 2).

Data collation, analysis and interpretation in practicals/tests and exams (ULO3)

By supervisor observation and assessment of results to practical classes (ULO4).

Unit Materials

Unit Outline

This unit outline is an important reference point for you study programme. Please read it carefully to make yourself familiar with it. It contains important information about the general aims of the unit; texts and references; and details about the assessment process, including allocation of marks, and submission dates.

Textbooks and References

There is no set text for this unit but the following texts in closed reserve may be useful. Please also see

Appendix I page 11-12 of this Unit Outline for more detailed information on the various textbooks including

ISBN numbers and location in the library .

1. Tietz fundamentals of clinical chemistry / [edited by] Carl A. Burtis, Edward R. Ashwood ;

(Call NumberQ 616.0756 TIE)

2. Tietz Textbook of Clinical Chemistry [edited by] Carl A. Burtis, Edward R. Ashwood

(Call Number 616.0756 TIE)

3. Gaw, A. (1995). Clinical biochemistry : an illustrated colour text . Edinburgh: Churchill Livingstone.

(Call Number 616.0756 CLI)

3. Clinical chemistry in diagnosis and treatment. Mayne, Philip D. (Call Number 616.0756 MAY)

4. Clinical chemistry : principles, procedures, correlations / [edited by] Michael L. Bishop, Janet L.

(Call Number Q 616.0756 CLI)

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It is highly recommended that you purchase at least one book. The following textbooks, all very useful, have been regularly available from the bookshop.

1.

Tietz fundamentals of clinical chemistry (isbn 0-7216-8634-6). This will serve you well if you are intent on majoring in Clinical Biochemistry. It covers physiological, clinical and methodological aspects. However, it is expensive.

2.

Clinical Biochemistry-An Illustrated Text (isbn 0443 072698). This is an excellent book on the rudiments of clinical chemistry. However, it contains very little on methodologies.

3.

Clinical Chemistry-principles, procedures, correlations, 4th edn, (isbn: 0-781-4611-6). This book deals mainly with clinical aspects, but also has reasonable coverage of methodologies. It also contains numerous case presentations. It is also available in the library.

4.

Medical Biochemistry (isbn 0-12-095440-0). This is an excellent book on metabolism and physiological chemistry. However it contains little in the way of clinical aspects.

Web-Based Resources

Journals on the Web

Full text versions of many journals can be accessed via Science Direct, ProQuest, Swetswise and Wiley

Interscience. These search engines can be accessed via Curtin’s Home Page, then Library, then Access

Gecko, then Resource Categories, then Full Text. You will need your username and password for this.

LabTestsOnline ( http://www.labtestsonline.org.au

).This is a website designed for the Australian healthcare consumer. It should not be used as your primary resource, but it is a useful site which is edited by laboratory professionals. It contains information on most of the common laboratory tests, including Clinical Biochemistry,

Haematology, genetics etc.

Useful Journals

Useful journals are Clinical Chemistry, Clinical Biochemistry, Clinica Chimica Acta, and the American,

Australian and British Medical Journals.

Blackboard

The Clin Biochem 234 section of the Blackboard site is password-protected. To use Blackboard, you will need a username and password. You may also find some of the information available through the School of

Biomedical Sciences Home Page useful. From here, you can find out about the School of Biomedical

Sciences, its courses and its staff. Unit Delivery

Unit Delivery

Study Load

To be successful in completing this unit, it is recommended that you study for ~ 4 -5 hours a week, in addition to the scheduled classes. Being sufficiently organized to set time aside for study, revision, and completion of practical reports and assignments is critical. As already mentioned, if you have any difficulties, it is advisable to ask for help at the earliest possible opportunity. Misunderstandings early in the course can compromise understanding of topics/concepts later in the course.

Tuition Pattern

5 hours per week allocated as follows:

Lectures:

Practicals:

Attendance of Lectures & Blackboard Content

2 x 1 hour

1 x 3 hours

Attendance at all lectures is very strongly recommended. Not all of the material is covered by the on-line material in Blackboard.

Case Studies

A number of the practical exercises may be based on study of patient cases. For these, you will be presented with clinical histories. You will be expected to carry out several laboratory analyses. You will then be expected to interpret the data in the light of material which has been covered in lectures or pre-lab presentations.

Practicals

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Appropriate clothing is compulsory for the safe conduct of laboratory practicals. Attendance is compulsory.

Should you be unable to participate in laboratory practicals without an acceptable reason, including inappropriate attire, marks may be deducted. The material covered in the practical exercises as well as material covered in lectures, will be included in the two 2 hour written tests during the semester. Continuous assessments of the practicals contributes 20% to the total mark for this unit and you must hand-in your results sheets at the conclusion of each series of practical exercises. Each practical must be submitted with the Clinical Biochemistry 234 Practical Cover Sheet. The declaration on the Cover Sheet must be signed by students.

Assessment Format

Clinical Biochemistry 234 is assessed as follows:

Assessment Task Percentage of total mark

Assessment of practicals and pre-lab questions

(Attendance of practical sessions is compulsory).

2 theory assessments within the semester

20%

40%

(Both 1 hour tests, one held during practical classes on

17-18/8/09; and the other n the lecture slot on 24/9/09).

See page 8.

2 hour final written examination on lectures & practicals

(held during the University’s formal examination period)

TOTAL

40%

100%

Assessment Details

Significant Unit Policy

It is important to note, and in accordance with Curtin policy, that this unit is a SIGNIFICANT UNIT in which failure twice may lead to termination of a student’s course.

Students should note that a mark of 50% or more in all components of the unit is required in order to secure a pass, and that failure in any one area may result in an overall failure in this unit regardless of the total marks accrued. That is, a pass in the practical component but failure in the theory component (or vice versa) may lead to a fail grade for the unit, even though the student's total mark may exceed 50%.

Assessments of Practicals

Your results/reports for the practical exercises and the answers to pre-lab questions account for 20% of your final mark. Results must be submitted at the conclusion of each series of experiments. Each practical must be submitted with the Clinical Biochemistry 234 practical Cover Sheet. The declaration on the cover sheet must be signed by students. Do not reformat any proformas.

Theory Assessments

There will be two 1 hour assessments, the first held during practical classes on the 17-18/8/08 and the second, also held in the lecture time slot on 24/9/08. These tests will include questions on material from lectures and practicals.

Final examinations

The final theory examination will consist of a 2 hour paper conducted during the official university examination period. Further details regarding the final examinations will be provided later in the semester.

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University and School Policies

The School and the University have a number of policies regarding supplementary examinations; deferrement of exams; and the rights, responsibilities and ethical conduct of students. You should familiarize yourselves with these.

Supplementary Examinations

Supplementary examinations are not automatically awarded. The Board of Examiners will carefully review individual cases. No written application for supplementary examination will be considered.

Supplementary examinations are awarded only at the discretion of the Board of Examiners. The aim of a supplementary examination is to allow the student to correct minor problems /deficiencies in the initial assessment and not to gain extra study time or correct major problems. The number of supplementary examinations awarded will be kept to a minimum for any one examination period and for this course of study.

Supplementary examinations, if awarded, will be indicated on the official Curtin examination result statement posted to all students. It is your responsibility to check your status. You should note that supplementary examinations for units conducted in the School will be held during early July. Exact dates will be provided when these are finalized. A student who does not sit for a scheduled supplementary examination has no claim to a further examination. If you are awarded a supplementary examination it is imperative that you confirm the time and venue for the exam.

Deferred Assessment

Deferment of an examination is not automatic. Students may be permitted by the relevant Board of

Examiners to defer an examination or other assessment where circumstances outside their control have arisen. However, a student's overall performance may be taken into account in granting permission to defer an examination.

Applications for deferment on health grounds or as a result of extenuating circumstances must be submitted not later than seven (7) days after the end of the relevant examination period or assessment date during the semester. Detailed medical certificates should be attached to the application where appropriate.

The prescribed application form may be obtained either from Admission and Student Records or the Course

Coordinator. Completed forms must be submitted to the Course Coordinator.

Mobile Phones

As a courtesy to both lecturers and other students, if you have a mobile phone, please ensure that it is

TURNED OFF during lecture, tutorial and practical sessions. Students who do not comply with this request may be asked to leave the class.

Plagiarism Policy

The School of Biomedical Sciences advises students that it will use screening software to check for plagiarism in submitted work suspected of containing plagiarized material and also for routine screening of text as deemed appropriate by the Head of School.

It is not acceptable to simply copy the words of other students or authors when completing the weekly exercises and assignments in this unit. This action constitutes plagiarism and is regarded as academic malpractice. The penalties for plagiarism can be severe and may include termination from your course of study. All direct quotes must be correctly attributed to the author and should be kept to a minimum. Also, you should include a list of references to acknowledge the source(s) of information used to produce any written work. Useful examples and explanations to help you understand the nature of this academic malpractice may be seen at the website – http://www.indiana.edu/~wts/wts/plagiarism.html

.

As a guide only, typical penalties which may be imposed by the School of Biomedical Sciences for some of the more common types of plagiarism (including collusion) are shown in the Table below. Please note that each case of academic malpractice is assessed individually, and that penalties actually imposed by the Head of School (or delegate) may vary from the examples shown below.

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Example

Students submitting very similar work (even as a result of legitimate co-operation).

Degree of seriousness

Collusion

Minor to Severe.

Typical Penalty

Loss of marks for that question or assignment etc by both students.

Not referencing input (factual statements, definitions etc) where students’ words are used.

Not referencing input where plagiarized words are used.

Not acknowledging ideas or concepts belonging to others

(i.e. stealing intellectual property).

Minor to Intermediate.

Depends on context, but may be serious.

Usually serious.

Loss of 5% of assessment entity for each instance.

Loss of 50 – 100% of marks for that question or assignment as appropriate.

Loss of marks plus an additional penalty which could entail failure of unit and/or possible termination from course. depending on the circumstances

Copyright Requirements

As a student of Curtin you must be familiar with the requirements of the University's Copyright Procedures.

Guidance is available to you at http://lisweb.curtin.edu.au/copyright/ , under the heading “Information for All

Students”. Curtin's Copyright Procedures can be found under the heading Related Curtin Policies and

Procedures whilst the Copyright Act can be accessed from the additional information heading at that web site should you wish to understand the source of the procedures.

Failure to comply with the University's policies and procedures on Copyright and IT/IS use may include suspension or termination of enrolment, fines, withdrawal of privileges for use of the University's ICT facilities and services and, depending on what is copied, stored or communicated, may also render you liable to prosecution in the courts."

Academic Dishonesty

The University has further statements on the nature and unacceptability of academic dishonesty including cheating, plagiarism and the fabrication or falsification of data. http://www.curtin.edu.au/corporate/governance/

Student Charter.

This Charter states the expectations of students and staff in their interactions as members of the Curtin community .

http://www.curtin.edu.au/corporate/governance/

Grievance Procedures

This policy covers “Any real or perceived ground for complaint including perceived racial or sexual harassment; discrimination on the grounds of disability, race, religious belief, political viewpoint, sex, marital status or pregnancy; or any other unfair or improper treatment.”

It is your responsibility to familiarize yourself with these policies, details of which again, can be found at http://www.curtin.edu.au/corporate/governance/

Plagiarism monitoring

Some assignments in this unit will be monitored for plagiarism using Turnitin plagiarism detection service (see <http://www.Turnitin.com>).

Students, who do not want assignments to be retained in the Turnitin database, must lodge a special request using the form available at http://academicintegrity.curtin.edu.au/local/docs/nonretentionform.doc

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This form must be submitted along with your assignment. For further advice see http://academicintegrity.curtin.edu.au/turnitintrial.html

Turnitin at Curtin University of Technology

This document briefly explains how Turnitin works and why it is currently being trialed at Curtin

University.

What is Turnitin?

Turnitin ( www.turnitin.com

) is an electronic text matching system that compares text in a student assignment against electronic text on the Internet, in published works, on commercial databases, and in assignments previously submitted to Turnitin by students in universities all over the world, including assignments obtained from ‘paper mills’ (Internet sites which sell papers). The Turnitin system operates through a web site and is accessed using standard web browsers

Turnitin supports the implementation of the University’s mission and values

( strategic.curtin.edu.au/vmv.html

) and its policy on plagiarism

( www.policies.curtin.edu.au/documents/plagiarism.doc

). It is one of many resources that can assist in ensuring academic integrity is maintained.

Will my work be submitted to Turnitin?

All academic staff will have access to Turnitin, so there is a good chance that any submitted work for marking will be assessed by Turnitin. A copy of all work submitted to Turnitin will normally be retained on Turnitin’s database for future text matching.

What if I do not want my work retained by Turnitin?

The effectiveness of Turnitin depends on its ability to store copies of all documents submitted to it.

This has the benefit of protecting a student’s rights and intellectual property in the future. If for any reason you do not want your assignment to be retained on the Turnitin database after it has been checked, you are required to lodge the ‘non-retention’ form available at http://academicintegrity.curtin.edu.au/local/docs/nonretentionform.doc

and submit it along with your assignment to your Lecturer/Tutor.

For further information on the trial of Turnitin at Curtin please visit http://academicintegrity.curtin.edu.au/turnitintrial.html

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Programme for CB 234

SB Steve Bottomley

EH Erik Helmerhorst

27/7

3/8

10/8

17/8

24-28/8

31/9

7/9

14/9

WEEK

BEGINNING

LECTURE

Wed

(1700-1800)

Nutrient homeostasis

[SB]

Pentose phosphate pathway [SB]

Receptors and

Hormones [EH]

LECTURE

Friday

Week 1-5 (1700-

1800), week 6-12,

(1300-1400)

Gluconeogenesis [SB]

General Regulatory

Mechanisms [EH]

Pancreatic Hormones

Insulin Action [EH]

Glucagon, cAMP and hormone action [EH]

Calcium and Hormone

Action [EH]

Tuition free week

21/9

Lipoprotein

Receptors [CM]

Lipoprotein

Metabolism [CM]

Function and diagnostic utility of major plasma proteins and enzymes

Biochemical markers of liver disease.

Steroid Hormones

[CM]

Thyroid Function

[CM]

Enzymes in Diagnosis and Monitoring of

Tissue Damage

Test 2

28/9-2/10

5/10

12/10

19/10

26/10

2/11

Diagnosis and monitoring of

Diabetes Mellitus

Water and Electrolyte

Balance

Renal Function

Blood gases, acids, and buffers

Tuition Free Week

Water and Electrolyte

Balance

Plasma potassium

Renal Function

Blood gases, acids and buffers

Study Week

10/11

19/11

Study Week

Examinations

Examinations

Examinations

Examinations

PRACTICAL

310.103 (A)

No practical

Glucose metabolism

Glucose metabolism

Test 1 +

Submission of practicals

Plasma Lipids

Markers of Tissue Damage

-Cardiac Markers/LFTs-

Markers of Tissue Damage

-Cardiac Markers/LFTs-

Tutorial +

Submission of practicals

Urea, creatinine and electrolytes

Urea, creatinine and electrolytes

Review session

Reports Due

Practical exam if required

(e.g. if attendance was poor or failed to submit practical reports)

Study Week

Examinations

Examinations

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APPENDIX I

Clinical Biochemistry Textbooks

See the next page for additional details on these books, including titles, version, location in the library etc.

Texts emphasizing Clinical and Methodological aspects

(Burtis, Ashwood, & Border, 2001)

(Tietz, Aldrich, Burtis, & Ashwood, 1996)

(Bishop, Fody, & Schoeff, 2005 or 2010)

The first two of these references are much stronger on methodological aspects.

All three are excellent. The second is a little dated. The last (Bishop et al., 2005) is weaker on methodology, but is easy to read, and cheaper.

Texts emphasizing physiological biochemistry

(Bhagavan, 2002)

This is an excellent book on metabolism and physiological chemistry. However, it contains little in the way of clinical or methodological aspects.

Texts with an emphasis on clinical and physiological aspects

(Zilva, Pannall, & Mayne, 1988)

(Mayne, Zilva, & Pannall, 1994a)

(Gaw, 1995)

However, it contains little on methodologies, quality control etc. The first two (Mayne et al.,

1994a; Zilva et al., 1988) are very good, but are dated. The last (Gaw, 1995) is an excellent book on the rudiments of clinical chemistry. This particular edition is dated. Newer versions

(2004 edition, ISBN 0443072698) are available through the bookshop, and are very reasonably priced.

Texts on Methodological Aspects Only

(Varcoe, 2001)

Texts with an emphasis on case examples

(Mayne, Zilva, & Pannall, 1994b)

(Walmsley, Watkinson, & Cain, 1999)

(Walmsley & White, 1994)

These are excellent. For some topics, where there have been significant advances (eg thyroid function testing) newer editions (eg 1999) are preferable. However, all the texts illustrate how clinical biochemistry tests are used in practice.

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