Chapter 4 Genes and Genetic Diseases Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. Definitions Genetics—the study of biologic heredity Gene—basic unit of heredity Genomics—the field of genetics concerned with the structural and functional studies of the genome Genome—DNA representing all of the genes for a given species Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 2 DNA Pentose sugar (deoxyribose) Phosphate molecule Four nitrogenous bases Pyrimidines: cytosine and thymine Purines: adenine and guanine Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 3 Nitrogenous Bases Nucleoproteins created from amino acids Purines Adenine and guanine Double-ring structures Pyrimidines Cytosine and thymine Single-ring structures Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 4 DNA Structure Anti-parallel structure Nucleotide pairings Adenine with thymine • 2 hydrogen bonds Cytosine with guanine • 3 hydrogen bonds Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 5 DNA Organization Chromosome Temporary but consistent state of DNA Composed of two longitudinal sister chromatids 1/10,000 as long as outstretched DNA • 7.2 x 10-3 inches Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 6 DNA Structure 3 billion DNA base pairs per human cell On average, humans vary on 3 million base pairs Human genome contains 20,000 to 25,000 genes Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 7 Proteins One or more polypeptides Composed of amino acids 20 amino acids Directed by sequence of bases (codons) Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 8 DNA Replication Untwisting and unzipping of the DNA strand Single strand acts as a template Complementary base pairing by DNA polymerase Adenine-thymine; cytosine-guanine Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 9 Transcription RNA is synthesized from the DNA template via RNA polymerase Results in the formation of mRNA mRNA moves out of the nucleus and into the cytoplasm Gene splicing Introns, extrons Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 10 Transcription Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 11 Translation Process by which RNA directs the synthesis of a polypeptide via interaction with transfer RNA Site of protein synthesis is the ribosome tRNA contains a sequence of nucleotides (anticodon) complementary to the triad of nucleotides on the mRNA strand (codon) The ribosome moves along the mRNA sequence to translate the amino acid sequence Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 12 Translation Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 13 Chromosomes Somatic cells Gametes Contain 46 chromosomes (23 pairs) Diploid cells Contain 23 chromosomes Haploid cells • One member of each chromosome pair Meiosis Formation of haploid cells from diploid cells Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 14 Chromosome Structure Short arm Long arm “q” Centromere “p”—petit Region of attachment of sister chromatids Telomere Region containing multiple base pairs Shorten with each cell division Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 15 Chromosomes Diploid (2n) number in humans is 46 Somatic cells contain the diploid number of chromosomes (retained during mitosis) Gametes contain the haploid number of chromosomes (occurs through meiosis) Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 16 Chromosomes Autosomes The first 22 of the 23 pairs of chromosomes in males and females The two members are virtually identical and thus said to be homologous Sex chromosomes Remaining pair of chromosomes In females, it is a homologous pair (XX) In males, it is a nonhomologous pair (XY) Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 17 Karyotype Ordered display of chromosomes Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 18 Mutation Any inherited alteration of genetic material Chromosome aberrations Base pair substitution • One base pair is substituted for another; may result in change in amino acid sequence • Silent substitution Does not result in an amino acid change RNA codons GUU, GUC, GUA, GUG all code for the amino acid valine Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 19 Mutations Mutations in somatic cells are not transmitted to offspring Mutations in gametes are transmitted to offspring Point mutation A single nucleotide base-pair change in DNA Rates of spontaneous mutation Varies per gene 10-4 to 10-7 per gene per generation Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 20 Mutagen Agent known to increase the frequency of mutations Radiation Chemicals Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 21 Silent Mutation A DNA sequence change that does not change the amino acid sequence of a gene Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 22 Missense Mutation A type of mutation that results in a single amino acid change in the translated gene product Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 23 Nonsense Mutation A type of mutation in which an mRNA stop codon is: Produced, resulting in premature termination of the protein sequence or Removed, resulting in an elongated protein sequence Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 24 Nonsense Mutation Premature termination of the protein sequence THE FAT CAT ATE THE RAT THE FAT CAT ATE Elongation of the protein sequence THE FAT CAT ATE THE RAT THE FAT CAT ATE THE RAT AND THE HAT AND THE MAT Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 25 Frameshift Mutation An alteration of DNA in which an addition or deletion of a base pair occurs Results in a change in the entire “reading frame” Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 26 Consequences of Mutations Gain of function Associated with dominant disorders Production of new protein product Overexpression of a protein product Inappropriate expression of a protein product Loss of function Associated with recessive disorders Loss of 50% of the protein product • May or may not be adequate for normal function Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 27 Chromosome Abnormalities Euploid cells Cells that have a multiple of the normal number of chromosomes Haploid and diploid cells are euploid forms When a euploid cell has more than the diploid number, it is called a polyploid cell Triploidy: a zygote having three copies of each chromosome (69) Tetraploidy: four copies of each (92 total) Triploid and tetraploid fetuses don’t survive Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 28 Chromosome Abnormalities Disjunction Normal separation of chromosomes during cell division Nondisjunction Usually the cause of aneuploidy Failure of homologous chromosomes or sister chromatids to separate normally during meiosis or mitosis Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 29 Nondisjunction Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 30 Chromosome Abnormalities Aneuploidy A somatic cell that does not contain a multiple of 23 chromosomes A cell containing three copies of one chromosome is trisomic (trisomy) Monosomy is the presence of only one copy of any chromosome Monosomy is often fatal, but infants can survive with trisomy of certain chromosomes • “It is better to have extra than less” Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 31 Chromosomal Disorders Leading cause of mental retardation and miscarriage Incidence of chromosomal abnormalities 1/12 conceptions Approximately 95% of conceptions with chromosome disorders result in miscarriage 50% of first-trimester miscarriages associated with a major chromosomal abnormality 1/150 live births with a major diagnosable chromosomal abnormality Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 32 Autosomal Aneuploidy Down syndrome Best-known example of aneuploidy • Trisomy 21 (47, XX or 47, XY karyotype) 1:800 live births Mentally retarded, low nasal bridge, epicanthal folds, protruding tongue, poor muscle tone Risk increases with maternal age Increased risk of congenital heart disease, gastrointestinal disease, and leukemia Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 33 Down Syndrome Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 34 Other Autosomal Aneuploidies Trisomy 13 and 18 More severe clinical manifestations than trisomy 21 Death in early infancy is common Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 35 Autosomal Aneuploidy Partial trisomy Only an extra portion of a chromosome is present in each cell Chromosome mosaics Trisomies occurring only in some cells of the body Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 36 Sex Chromosome Aneuploidy One of the most common is trisomy X. This is a female that has three X chromosomes. Termed “metafemale” Symptoms are variable: sterility, menstrual irregularity, and/or mental retardation Symptoms worsen with each additional X Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 37 Sex Chromosome Aneuploidy Turner syndrome Females with only one X chromosome Characteristics • Absence of ovaries (sterile) • Short stature (~ 4'7") • Webbing of the neck • Edema • Underdeveloped breasts; wide nipples • High number of aborted fetuses • X is usually inherited from mother Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 38 Turner Syndrome Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 39 Sex Chromosome Aneuploidy Klinefelter syndrome Individuals with at least two Xs and one Y chromosome Characteristics • Male appearance • Develop female-like breasts • Small testes • Sparse body hair • Long limbs Some individuals can be XXXY and XXXXY. The abnormalities will increase with each X. Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 40 Klinefelter Syndrome Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 41 Alterations in Chromosome Structure Deletion Loss of a sequence of DNA from a chromosome Inversion Chromosomal rearrangement in which a segment of a chromosome is reversed end to end Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 42 Alterations in Chromosome Structure Translocation Transfer of one chromosome segment to another Ring chromosome Structurally abnormal chromosome in which the telomere of each chromosome arm has been deleted and the broken arms have joined Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 43 Alterations in Chromosome Structure Chromosome breakage If a chromosome break does occur, physiologic mechanisms usually repair the break, but the breaks often heal in a way that alters the structure of the chromosome Agents of chromosome breakage • Ionizing radiation, chemicals, and viruses Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 44 Alterations in Chromosome Structure Breakage or loss of DNA Cri du chat syndrome “Cry of the cat” Deletion of short arm of chromosome 5 (5p-) Low birth weight, metal retardation, and microcephaly Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 45 Alterations in Chromosome Structure Infant with cri du chat (5p deletion) syndrome Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 46 Alterations in Chromosome Structure Duplication A repeated gene or gene sequence Rare occurrence Less serious consequences because better to have more genetic material than less (deletion) Duplication in the same region as cri du chat causes mental retardation but no physical abnormalities Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 47 Alterations in Chromosome Structure Inversions Two breaks on a chromosome Reversal of the gene order Usually occurs from a breakage that gets reversed during reattachment • ABCDEFG may become ABEDCFG Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 48 Alterations in Chromosome Structure Translocations The interchanging of material between nonhomologous chromosomes Translocation occurs when two chromosomes break and the segments are rejoined in an abnormal arrangement Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 49 Alterations in Chromosome Structure Fragile sites Fragile sites are areas on chromosomes that develop distinctive breaks or gaps when cells are cultured No apparent relationship to disease Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 50 Alterations in Chromosome Structure Fragile X syndrome Site on the long arm of the X chromosome Associated with mental retardation; second in occurrence to Down syndrome Higher incidence in males because they have only one X chromosome Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 51 Genetics Gregor Mendel Austrian monk Garden pea experiments Mendelian traits Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 52 Genes Basic units of heredity Sequences of chromosomal DNA coding for the production of a functional product Templates for mRNA that code for specific proteins All genes are contained in each cell of the body Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 53 Genes Locus: location occupied by a gene on a chromosome Allele: alternate version of a gene at a locus Each individual possesses two alleles for each gene Homozygous: possessing identical alleles of a given gene Heterozygous: possessing two different alleles of a given gene Polymorphism Locus that has two or more alleles that occur with appreciable frequency Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 54 Genetics Homozygous Loci on a pair of chromosomes have identical alleles Example • O blood type (OO) Heterozygous Loci on a pair of chromosomes have different alleles Example • AB blood type (A and B alleles on pair of loci) Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 55 Genetics Genotype (“what they have”) Phenotype (“what they demonstrate”) The genetic makeup of an organism The observable, detectable, or outward appearance of the genetics of an organism Example A person with the A blood type could be AA or AO. A is the phenotype; AA or AO is the genotype. Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 56 Genetics If two alleles are found together, the allele that is observable is dominant, and the one whose effects are hidden is recessive In genetics, the dominant allele is represented by a capital letter, and the recessive by a lowercase letter Alleles can be codominant Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 57 Genetics Carrier A carrier is one that has a disease gene but is phenotypically normal For a person to demonstrate a recessive disease, the pair of recessive genes must be inherited Example • Ss = sickle cell anemia carrier • ss = demonstrates sickle cell disease Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 58 Pedigrees Used to study specific genetic disorders within families Begins with the proband Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 59 Pedigrees Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 60 Single-Gene Disorders Recurrence risk The probability that parents of a child with a genetic disease will have yet another child with the same disease Recurrence risk of an autosomal dominant trait • When one parent is affected by an autosomal dominant disease and the other is normal, the occurrence and recurrence risks for each child are one half Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 61 Single-Gene Disorders Autosomal dominant disorder Abnormal allele is dominant, normal allele is recessive, and the genes exist on a pair of autosomes Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 62 Autosomal Dominant Disorders Characteristics of autosomal dominant disorders Condition is expressed equally in males and females Approximately half of children of an affected heterozygous individual will express the condition • Homozygous affected individuals are rare No generational skipping Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 63 Gene Mapping Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 64 Single-Gene Disorders Autosomal dominant traits Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 65 Single-Gene Disorders Autosomal dominant trait pedigree Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 66 Penetrance The percentage of individuals with a specific genotype who also express the expected phenotype Incomplete penetrance • Individual who has the gene for a disease but does not express the disease • Retinoblastoma (eye tumor in children) demonstrates incomplete penetrance (90%) Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 67 Expressivity Expressivity is the variation in a phenotype associated with a particular genotype This can be caused by modifier genes Examples: von Recklinghausen disease • Autosomal dominant • Long arm of chromosome 17 • Disease varies from dark spots on the skin to malignant neurofibromas, scoliosis, gliomas, neuromas, etc. Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 68 Expressivity Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 69 Single-Gene Disorders Autosomal recessive disorder Abnormal allele is recessive and a person must be homozygous for the abnormal trait to express the disease The trait usually appears in the children, not the parents, and it affects the genders equally because it is present on a pair of autosomes Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 70 Single-Gene Disorders Autosomal recessive disorder recurrence risk Recurrence risk of an autosomal dominant trait • When two parents are carriers of an autosomal recessive disease, the occurrence and recurrence risks for each child are 25% Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 71 Autosomal Recessive Disorder Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 72 Autosomal Recessive Disorders Characteristics Condition expressed equally in males and females Affected individuals most often the offspring of asymptomatic heterozygous carrier parents • Approximately 1/4 of offspring will be affected; 1/2 will be • asymptomatic carriers; and 1/4 will be unaffected Individuals must be homozygous for the condition to be expressed Generational skipping may be present Consanguinity may be present Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 73 Consanguinity Mating of two related individuals Dramatically increases the recurrence risk of recessive disorders Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 74 Sex-Linked Disorders Disorders involve X and Y chromosomes X-linked disorders usually expressed by males because females have another X chromosome to mask the abnormal allele Most are recessive Y-linked disorders uncommon because Y chromosome contains relatively few genes Father-son transmission present No father-daughter transmission Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 75 X-Linked Recessive Disorders Characteristics Males most commonly affected • Affected males cannot transmit the genes to sons, but they can to all daughters Unaffected carrier females • Sons of female carriers have a 50% risk of being affected Pedigree analysis • Generational skipping often present • No father-to-son transmission Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 76 X-Linked Recessive Disorders A. B. C. Outcomes for offspring of an unaffected father and a heterozygous unaffected carrier mother (most common scenario) Outcomes for offspring of an affected father and a homozygous unaffected mother Outcomes for offspring of an affected father and a heterozygous unaffected carrier mother Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 77 X-Linked Recessive Disorders Hemophilia Bleeding disorders resulting from a congenital deficiency of coagulation factors • Hemophilia A: factor VIII deficiency 20.6/100,000 male births in U.S. • Hemophilia B: factor IX deficiency 5.3/100,000 male births in U.S. Mutations associated with factor VIII deficiency: • Large deletions or insertions, frameshift and splice junction changes, and nonsense and missense mutations • Mutations vary across families but tend to be similar within families Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 78 Multifactorial Inheritance Characteristics of multifactorial disorders Result from hereditary and environmental factors Hereditary component is polygenic • Individual involved genes follow mendelian principles • Many genes act together to influence the expressed trait Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 79 Multifactorial Inheritance Concordance and discordance Concordance • Expression of the disease in two related family members Discordance • Expression of the disease in one family member but not a second Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 80 Multifactorial Inheritance Twin studies and concordance Genetic conditions • Monozygotic (MZ) twins: 100% concordance • Dizygotic (DZ) twins: less than 100% and similar to that among other siblings Environmental conditions • Equal concordance rates among MZ and DZ twins Multifactorial conditions • MZ twins with greater concordance than DZ twins, but rates are not 100% Adoption studies Gene-environment-lifestyle interaction Mosby items and derived items © 2010, 2006 by Mosby, Inc., an affiliate of Elsevier Inc. 81