Publications for Benjamin Parker
Publications for Benjamin Parker
2016
Davey, J., Watt, K., Parker, B., Chaudhuri, R.,
Ryall, J., Cunningham, L., Qian, H., Sartorelli,
V., Sandri, M., Chamberlain, J., James, D., et al
(2016). Integrated expression analysis of muscle
hypertrophy identifies Asb2 as a negative
regulator of muscle mass. JCI Insight, 1(5),
e85477. <a
href="http://dx.doi.org/10.1172/jci.insight.85477
">[More Information]</a>
Pangon, L., Ng, I., Giry-Laterriere, M., Currey,
N., Morgan, A., Benthani, F., Tran, P.,
Al-Sohaily, S., Segelov, E., Parker, B., et al
(2016). JRK is a positive regulator of β-catenin
transcriptional activity commonly overexpressed
in colon, breast and ovarian cancer. Oncogene,
35(22), 2834-2841. <a
href="http://dx.doi.org/10.1038/onc.2015.347">[
More Information]</a>
Rogers, S., Fey, D., McCloy, R., Parker, B.,
Mitchell, N., Payne, R., Daly, R., James, D.,
Caldon, C., Watkins, D., et al (2016). PP1
initiates the dephosphorylation of MASTL,
triggering mitotic exit and bistability in human
cells. Journal of Cell Science, 129(7),
1340-1354. <a
href="http://dx.doi.org/10.1242/jcs.179754">[M
ore Information]</a>
Litholdo, C., Parker, B., Eamens, A., Larsen, M.,
Cordwell, S., Waterhouse, P. (2016). Proteomic
Identification of Putative MicroRNA394 Target
Genes in Arabidopsis thaliana Identifies Major
Latex Protein Family Members Critical for
Normal Development. Molecular and Cellular
Proteomics, 15(6), 2033-2047. <a
href="http://dx.doi.org/10.1074/
mcp.M115.053124">[More Information]</a>
Parker, B., Thaysen-Andersen, M., Fazakerley,
D., Holliday, M., Packer, N., James, D. (2016).
Terminal Galactosylation and Sialylation
Switching on Membrane Glycoproteins upon
TNF-Alpha-Induced Insulin Resistance in
Adipocytes. Molecular and Cellular Proteomics,
15(1), 141-153. <a
href="http://dx.doi.org/10.1074/mcp.M115.0542
21">[More Information]</a>
2015
Saathoff, H., Brofelth, M., Trinh, A., Parker, B.,
Ryan, D., Low, J., Webb, S., Silva, A., Mackay,
J., Shepherd, N. (2015). A peptide affinity
reagent for isolating an intact and catalytically
active multi-protein complex from mammalian
cells. Bioorganic and Medicinal Chemistry,
23(5), 960-965. <a
href="http://dx.doi.org/10.1016/j.bmc.2015.01.0
23">[More Information]</a>
Rogers, S., McCloy, R., Parker, B., Chaudhuri,
R., Gayevskiy, V., Hoffman, N., Watkins, D.,
Daly, R., James, D., Burgess, A. (2015). Dataset
from the global phosphoproteomic mapping of
early mitotic exit in human cells. Data in Brief,
5, 45-52. <a
href="http://dx.doi.org/10.1016/j.dib.2015.08.01
0">[More Information]</a>
Hoffman, N., Parker, B., Chaudhuri, R.,
Fisher-Wellman, K., Kleinert, M., Humphrey, S.,
Yang, P., Holliday, M., Trefely, S., Fazakerley,
D., Stoeckli, J., Burchfield, J., James, D., et al
(2015). Global Phosphoproteomic Analysis of
Human Skeletal Muscle Reveals a Network of
Exercise-Regulated Kinases and AMPK
Substrates. Cell Metabolism, 22(5), 922-935. <a
href="http://dx.doi.org/10.1016/j.cmet.2015.09.0
01">[More Information]</a>
McCloy, R., Parker, B., Rogers, S., Chaudhuri,
R., Gayevskiy, V., Hoffman, N., Ali, N.,
Watkins, N., Daly, R., James, D., et al (2015).
Global Phosphoproteomic Mapping of Early
Mitotic Exit in Human Cells Identifies Novel
Substrate Dephosphorylation Motifs. Molecular
and Cellular Proteomics, 14(8), 2194-2212. <a
href="http://dx.doi.org/10.1074/mcp.M114.0469
38">[More Information]</a>
Thaysen-Andersen, M., Venkatakrishnan, V.,
Loke, I., Laurini, C., Diestel, S., Parker, B.,
Packer, N. (2015). Human neutrophils secrete
bioactive paucimannosidic proteins from
azurophilic granules into pathogen-infected
sputum. The Journal of Biological Chemistry,
290(14), 8789-8802. <a
href="http://dx.doi.org/10.1074/jbc.M114.63162
2">[More Information]</a>
Trefely, S., Khoo, P., Krycer, J., Chaudhuri, R.,
Fazakerley, D., Parker, B., Sultani, G., Lee, J.,
Stephan, J., Torres, E., James, D., Stoeckli, J., et
al (2015). Kinome Screen Identifies PFKFB3
and Glucose Metabolism as Important
Regulators of the Insulin/IGF-1 Signalling
Pathway. The Journal of Biological Chemistry,
290(43), 25834-25846. <a
href="http://dx.doi.org/10.1074/jbc.M115.65881
5">[More Information]</a>
Chaudhuri, R., Sadrieh, A., Hoffman, N., Parker,
B., Humphrey, S., Stoeckli, J., Hill, A., James,
D., Yang, J. (2015). PhosphOrtholog: a
web-based tool for cross-species mapping of
orthologous protein post-translational
modification. BMC Genomics, 16(1), 1-14. <a
href="http://dx.doi.org/10.1186/s12864-015-182
0-x">[More Information]</a>
Fazakerley, D., Naghiloo, S., Chaudhuri, R.,
Koumanov, F., Burchfield, J., Thomas, K.,
Krycer, J., Prior, M., Parker, B., Murrow, B.,
Stoeckli, J., Meoli, C., James, D., et al (2015).
Publications for Benjamin Parker
Proteomic Analysis of GLUT4 Storage Vesicles
Reveals Tumour Suppressor Candidate 5
(TUSC5) as a Novel Regulator of Insulin Action
in Adipocytes. The Journal of Biological
Chemistry, 290(39), 23528-23542. <a
href="http://dx.doi.org/10.1074/jbc.M115.65736
1">[More Information]</a>
Parker, B., Yang, G., Humphrey, S., Chaudhuri,
R., Ma, X., Peterman, S., James, D. (2015).
Targeted phosphoproteomics of insulin signaling
using data-independent acquisition mass
spectrometry. Science Signaling, 8(380), 1-8. <a
href="http://dx.doi.org/10.1126/scisignal.aaa313
9">[More Information]</a>
2014
Liao, B., Raddatz, K., Zhong, L., Parker, B.,
Raftery, M., Schmitz-Peiffer, C. (2014).
Proteomic analysis of livers from fat-fed mice
deficient
in either PKC(delta)or PKC(epsilon) identifies
Htatip2 as a regulator of lipid metabolism.
Proteomics, 14, 2578-2587. <a
href="http://dx.doi.org/10.1002/pmic.201400202
">[More Information]</a>
Solis, N., Parker, B., Kwong, S., Robinson, G.,
Firth, N., Cordwell, S. (2014). Staphylococcus
aureus Surface Proteins Involved in Adaptation
to Oxacillin Identified Using a Novel Cell
Shaving Approach. Journal of Proteome
Research, 13(6), 2954-2972. <a
href="http://dx.doi.org/10.1021/pr500107p">[M
ore Information]</a>
Parker, B., Shepherd, N., Trefely, S., Hoffman,
N., White, M., Engholm-Keller, K., Hambly, B.,
Larsen, M., James, D., Cordwell, S. (2014).
Structural Basis for Phosphorylation and Lysine
Acetylation Cross-talk in a Kinase Motif
Associated with Myocardial Ischemia and
Cardioprotection. The Journal of Biological
Chemistry, 289(37), 25890-25906. <a
href="http://dx.doi.org/10.1074/jbc.M114.55603
5">[More Information]</a>
2013
Parker, B., Larsen, M., Edvinsson, L., Povlsen,
G. (2013). Signal transduction in cerebral arteries
after subarachnoid hemorrhage-a
phosphoproteomic approach. Journal of
Cerebral Blood Flow and Metabolism, 33(8),
1259-1269. <a
href="http://dx.doi.org/10.1038/jcbfm.2013.78">
[More Information]</a>
Parker, B., Thaysen-Andersen, M., Solis, N.,
Scott, N., Larsen, M., Graham, M., Packer, N.,
Cordwell, S. (2013). Site-Specific
Glycan-Peptide Analysis for Determination of
N-Glycoproteome Heterogeneity. Journal of
Proteome Research, 12(12), 5791-8000. <a
href="http://dx.doi.org/10.1021/pr400783j">[Mo
re Information]</a>
2012
Palmisano, G., Parker, B., Engholm-Keller, K.,
Lendal, S., Kulej, K., Schulz, M., Schwammle,
V., Graham, M., Saxtorph, H., Cordwell, S., et al
(2012). A novel method for the simultaneous
enrichment, identification, and quantification of
phosphopeptides and sialylated glycopeptides
applied to a temporal profile of mouse brain
development. Molecular and Cellular
Proteomics, 11(11), 1191-1202. <a
href="http://dx.doi.org/10.1074/mcp.M112.0175
09">[More Information]</a>
Palmisano, G., Melo-Braga, M.,
Engholm-Keller, K., Parker, B., Larsen, M.
(2012). Chemical deamidation: A common pitfall
in large-scale N-Linked glycoproteomic mass
spectrometry-based analyses. Journal of
Proteome Research, 11(3), 1949-1957.
Cordwell, S., Edwards, A., Liddy, K.,
Moshkanbaryans, L., Solis, N., Parker, B., Yong,
A., Wong, C., Kritharides, L., Hambly, B.,
White, M. (2012). Release of Tissue-specific
Proteins into Coronary Perfusate as a Model for
Biomarker Discovery in Myocardial
Ischemia/Reperfusion Injury. Journal of
Proteome Research, 11(4), 2114-2126. <a
href="http://dx.doi.org/10.1021/pr2006928">[M
ore Information]</a>
2011
Parker, B., Gupta, P., Cordwell, S., Larsen, M.,
Palmisano, G. (2011). Purification and
Identification of O-GlcNAc-Modified Peptides
Using Phosphate-Based Alkyne CLICK
Chemistry in Combination with Titanium
Dioxide Chromatography and Mass
Spectrometry. Journal of Proteome Research,
10(4), 1449-1458. <a
href="http://dx.doi.org/10.1021/pr100565j">[Mo
re Information]</a>
Parker, B., Palmisano, G., Edwards, A., White,
M., Engholm-Keller, K., Lee, A., Scott, N.,
Kolarich, D., Hambly, B., Packer, N., Cordwell,
S., et al (2011). Quantitative N-linked
glycoproteomics of myocardial ischemia and
reperfusion injury reveals early remodeling in the
extracellular environment. Molecular and
Cellular Proteomics, 10(8), 1-13. <a
href="http://dx.doi.org/10.1074/mcp.M110.0068
33">[More Information]</a>
Scott, N., Parker, B., Connolly, A., Paulech, J.,
Edwards, A., Crossett, B., Falconer, L., Kolarich,
D., Djordjevic, S., Hojrup, P., Cordwell, S., et al
(2011). Simultaneous Glycan-Peptide
Characterization Using Hydrophilic Interaction
Chromatography and Parallel Fragmentation by
Publications for Benjamin Parker
CID, Higher Energy Collisional Dissociation,
and Electron Transfer Dissociation MS Applied
to the N-linked Glycoproteome of
Campylobacter jejuni. Molecular and Cellular
Proteomics, 10(2), 1-18. <a
href="http://dx.doi.org/10.1074/mcp.M000031MCP201–1">[More Information]</a>
2010
Palmisano, G., Lendal, S., Engholm-Keller, K.,
Leth-Larsen, R., Parker, B., Larsen, M. (2010).
Selective enrichment of sialic acid-containing
glycopeptides using titanium dioxide
chromatography with analysis by HILIC and
mass spectrometry. Nature Protocols, 5(12),
1974-1982. <a
href="http://dx.doi.org/10.1038/nprot.2010.167"
>[More Information]</a>