Publications for W. Bret Church
Publications for W. Bret Church
2016
Nematollahi, A., Sun, G., Jayawickrama, G.,
Church, W. (2016). Kynurenine
aminotransferase isozyme inhibitors: A review.
International Journal of Molecular Sciences,
17(6), 1-22. <a
href="http://dx.doi.org/10.3390/ijms17060946">
[More Information]</a>
Nematollahi, A., Sun, G., Harrop, S., Hanrahan,
J., Church, W. (2016). Structure of the
PLP-Form of the Human Kynurenine
Aminotransferase II in a Novel Spacegroup at
1.83 A Resolution. International Journal of
Molecular Sciences, 17(4), 1-11. <a
href="http://dx.doi.org/10.3390/ijms17040446">
[More Information]</a>
2015
Lynch, G., Portelli, S., Church, W. (2015).
Composite Model of Full GP Structure of Ebola
Virus Envelope Glycoprotein. Journal of
Molecular and Genetic Medicine, 9, 1-4. <a
href="http://dx.doi.org/10.4172/1747-0862.1000/
101">[More Information]</a>
Jayawickrama, G., Sadig, R., Sun, G.,
Nematollahi, A., Nadvi, N., Hanrahan, J.,
Gorrell, M., Church, W. (2015). Kynurenine
aminotransferases and the prospects of inhibitors
for the treatment of schizophrenia. Current
Medicinal Chemistry, 22(24), 2902-2918. <a
href="http://dx.doi.org/10.2174/0929867322666
150608094054">[More Information]</a>
Kim, E., Rath, E., Tsang, V., Duff, A., Robinson,
B., Church, W., Benn, D., Dwight, T.,
Clifton-Bligh, R. (2015). Structural and
functional consequences of succinate
dehydrogenase subunit B mutations.
Endocrine-Related Cancer, 22(3), 387-397. <a
href="http://dx.doi.org/10.1530/ERC-15-0099">[
More Information]</a>
2014
Nematollahi, A., Aminimoghadamfarouj, N.,
Church, W. (2014). Essential structural features
of novel antischizophrenic drugs: a review.
Medicinal Chemistry, 10(6), 541-549. <a
href="http://dx.doi.org/10.2174/1573406410666
131229150746">[More Information]</a>
Nematollahi, A., Church, W., Nadvi, N., Gorrell,
M., Sun, G. (2014). Homology Modeling of
Human Kynurenine Aminotransferase III and
Observations on Inhibitor Binding Using
Molecular Docking. Central Nervous System
Agents in Medicinal Chemistry, 14(1), 2-9. <a
href="http://dx.doi.org/10.2174/1871524914666
140416095523">[More Information]</a>
Tessier, D., Laroum, S., Duval, B., Rath, E.,
Church, W., Hao, J. (2014). In silico evaluation
of the influence of the translocon on partitioning
of membrane segments. BMC Bioinformatics,
15(156). <a
href="http://dx.doi.org/10.1186/1471-2105-15-1
56">[More Information]</a>
Rath, E., Duff, A., Håkansson, A., Knott, R.,
Church, W. (2014). Small-angle X-ray scattering
of BAMLET at pH 12: A complex of
α-lactalbumin and oleic acid. Proteins: Structure,
Function, and Bioinformatics, 82(7), 1400-1408.
<a
href="http://dx.doi.org/10.1002/prot.24508">[M
ore Information]</a>
Lee, H., Lee, H., Lee, L., Teber, E., Church, W.
(2014). The use of soluble protein structures in
modeling helical proteins in a layered membrane.
Journal of Biomolecular Structure & Dynamics,
32(2), 308-318. <a
href="http://dx.doi.org/10.1080/07391102.2013.
765808">[More Information]</a>
2013
Rath, E., Tessier, D., Campbell, A., Lee, H.,
Werner, T., Salam, N., Lee, L., Church, W.
(2013). A benchmark server using high
resolution protein structure data, and benchmark
results for membrane helix predictions. BMC
Bioinformatics, 14(1), 1-11. <a
href="http://dx.doi.org/10.1186/1471-2105-14-1
11">[More Information]</a>
Zhou, F., Zheng, J., Zhu, L., Jodal, A., Cui, P.,
Wong, K., Gurney, H., Church, W., Murray, M.
(2013). Functional Analysis of Novel
Polymorphisms in the Human SLCO1A2 Gene
that Encodes the Transporter OATP1A2. The
AAPS Journal, 15(4), 1099-1108. <a
href="http://dx.doi.org/10.1208/s12248-013-951
5-1">[More Information]</a>
Werner, T., Church, W. (2013). Kink
characterization and modeling in transmembrane
protein structures. Journal of Chemical
Information and Modeling, 53(11), 2926-2936.
<a
href="http://dx.doi.org/10.1021/ci400236s">[Mo
re Information]</a>
Hamzeh-Mivehroud, M., Alizadeh, A., Morris,
M., Church, W., Dastmalchi, S. (2013). Phage
display as a technology delivering on the
promise of peptide drug discovery. Drug
Discovery Today, 18(23-24), 1144-1157. <a
href="http://dx.doi.org/10.1016/j.drudis.2013.09.
001">[More Information]</a>
Lee, L., Bryant, K., Bouveret, R., Lei, P., Duff,
A., Harrop, S., Huang, E., Harvey, R., Gelb, M.,
Gray, P., Church, W., et al (2013). Selective
Inhibition of Human Group IIA-secreted
Publications for W. Bret Church
Phospholipase a 2 (hGIIA) Signaling Reveals
Arachidonic Acid Metabolism Is Associated with
Colocalization of hGIIA to Vimentin in
Rheumatoid Synoviocytes. Journal of Biological
Chemistry, 288(21), 15269-15279. <a
href="http://dx.doi.org/10.1074/jbc.M112.39789
3">[More Information]</a>
2012
Akladios, F., Nadvi, N., Park, J., Hanrahan, J.,
Kapoor, V., Gorrell, M., Church, W. (2012).
Design and synthesis of novel inhibitors of
human kynurenine aminotransferase-I.
Bioorganic & Medicinal Chemistry Letters,
22(4), 1579-1581. <a
href="http://dx.doi.org/10.1016/j.bmcl.2011.12.1
38">[More Information]</a>
Lynch, G., Selleck, P., Church, W., Sullivan, J.
(2012). Seasoned adaptive antibody immunity
for highly pathogenic pandemic influenza in
humans. Immunology and Cell Biology, 90(2),
149-158. <a
href="http://dx.doi.org/10.1038/icb.2011.38">[M
ore Information]</a>
Werner, T., Morris, M., Dastmalchi, S., Church,
W. (2012). Structural modelling and dynamics of
proteins for insights into drug interactions.
Advanced Drug Delivery Reviews, 64(4),
323-343. <a
href="http://dx.doi.org/10.1016/j.addr.2011.11.0
11">[More Information]</a>
Keane, F., Chowdhury, S., Yao, T., Nadvi, N.,
Gall, M., Chen, Y., Osborne, B., Ribeiro, A.,
Church, W., McCaughan, G., Gorrell, M., Yu,
M. (2012). Targeting Dipeptidyl Peptidase-4
(DPP-4) and Fibroblast Activation Protein (FAP)
for Diabetes and Cancer Therapy. In Ben Dunn
(Eds.), Proteinases as Drug Targets, (pp.
118-144). Cambridge, UK: RSC Publishing.
2011
Bryant, K., Bidgood, M., Lei, P., Taberner, M.,
Salom, C., Kumar, V., Lee, L., Church, W.,
Courtenay, B., Smart, B., et al (2011). A
Bifunctional Role for Group IIA Secreted
Phospholipase A2 in Human Rheumatoid
Fibroblast-like Synoviocyte Arachidonic Acid
Metabolism. Journal of Biological Chemistry,
286(4), 2492-2503. <a
href="http://dx.doi.org/10.1074/jbc.M110.12392
7">[More Information]</a>
Broadhead, G., Mun, H., Avlani, V., Jourdon, O.,
Church, W., Christopoulos, A., Delbridge, L.,
Conigrave, A. (2011). Allosteric Modulation of
the Calcium-sensing Receptor by y-Glutamyl
Peptides Inhibition of PTH Secretion,
Suppression of Intracellular cAMP Levels and A
Common Mechanism of Action with L-Amino
Acids. Journal of Biological Chemistry, 286(11),
8786-8797. <a
href="http://dx.doi.org/10.1074/jbc.M110.14972
4">[More Information]</a>
Li, N., Yun, P., Jeffries, C., Langley, D.,
Gamsjaeger, R., Church, W., Hunter, N., Collyer,
C. (2011). The modular structure of
haemagglutinin/adhesin regions in gingipains of
Porphyromonas gingivalis. Molecular
Microbiology, 81(5), 1358-1373. <a
href="http://dx.doi.org/10.1111/j.1365-2958.201
1.07768.x">[More Information]</a>
2010
Zhou, F., Zhu, L., Cui, P., Church, W., Murray,
M. (2010). Functional characterization of
nonsynonymous single nucleotide
polymorphisms in the human organic anion
transporter 4 (hOAT4). British Journal of
Pharmacology, 159, 419-427. <a
href="http://dx.doi.org/10.1111/j.1476-5381.200
9.00545.x">[More Information]</a>
Yu, M., Yao, T., Chowdhury, S., Nadvi, N.,
Osborne, B., Church, W., McCaughan, G.,
Gorrell, M. (2010). The dipeptidyl peptidase IV
family in cancer and cell biology. The FEBS
Journal, 277(5), 1126-1144. <a
href="http://dx.doi.org/10.1111/j.1742-4658.200
9.07526.x">[More Information]</a>
Zhang, Y., Chen, M., Church, W., Lau, K.,
Larkum, A., Jermiin, L. (2010). The molecular
structure of the IsiA-Photosystem I
supercomplex, modelled from high-resolution,
crystal structures of Photosystem I and the CP43
protein. Biochimica et Biophysica Acta, 1797 (4),
457-465. <a
href="http://dx.doi.org/10.1016/j.bbabio.2010.01
.002">[More Information]</a>
2009
Morris, M., Dastmalchi, S., Church, W. (2009).
Rhodopsin: Structure, signal transduction and
oligomerisation. The International Journal of
Biochemistry and Cell Biology, 41(4), 721-724.
<a
href="http://dx.doi.org/10.1016/j.biocel.2008.04.
025">[More Information]</a>
2008
Dastmalchi, S., Church, W., Morris, M. (2008).
Modelling the structures of G protein-coupled
receptors aided by three-dimensional validation.
BMC Bioinformatics, 9(S1), S14-1-S14-13. <a
href="http://dx.doi.org/10.1186/1471-2105-9-S1S14">[More Information]</a>
Park, J., Knott, H., Nadvi, N., Collyer, C., Wang,
X., Church, W., Gorrell, M. (2008). Reversible
Inactivation of Human Dipeptidyl Peptidases 8
and 9 by Oxidation. The Open Enzyme Inhibition
Journal, 1, 52-60.
Publications for W. Bret Church
2007
Daly, K., Church, W., Nicholas, K., Williamson,
P. (2007). Comparative Modeling of Marsupial
MHC Class I Molecules Identifies Structural
Polymorphisms Affecting Functional Motifs.
Journal of Experimental Zoology. Part A:
Ecological Genetics and Physiology, 307A (11),
611-624. <a
href="http://dx.doi.org/10.1002/jez.413">[More
Information]</a>
Dastmalchi, S., Beheshti, S., Morris, M., Church,
W. (2007). Prediction of rotational orientation of
transmembrane helical segments of integral
membrane proteins using new
environment-based propensities for amino acids
derived from structural analyses. The FEBS
Journal, 274(10), 2653-2660. <a
href="http://www.ncbi.nlm.nih.gov/entrez/query.
fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract
&list_uids=17451441">[More Information]</a>
2006
Teber, E., Crawford, E., Bolton, K., Van Dyk,
D., Schofield, P., Kapoor, V., Church, W.
(2006). Djinn Lite: a tool for customised gene
transcript modelling, annotation-data enrichment
and exploration. BMC Bioinformatics, 7(33),
Article 33-1-33-9. <a
href="http://www.ncbi.nlm.nih.gov/entrez/query.
fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract
&list_uids=16426464">[More Information]</a>
Lynch, G., Turville, S., Carter, B., Sloane, A.,
Chan, A., Muljadi, N., Li, S., Low, L., Armati,
P., Raison, R., Zoellner, H., Williamson, P.,
Cunningham, A., Church, W. (2006). Marked
differences in the structures and protein
associations of lymphocyte and monocyte CD4:
Resolution of a novel CD4 isoform. Immunology
and Cell Biology, 84(2), 154-165. <a
href="http://www.ncbi.nlm.nih.gov/entrez/query.
fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract
&list_uids=16519733">[More Information]</a>
2005
Lukov, L., Chawla, S., Church, W. (2005).
Conditional Random Fields for Transmembrane
Helix Prediction. The Ninth Pacific-Asia
Conference on Knowledge Discovery and Data
Mining, Berlin: Springer.
2004
Lai, P., Kaplan, W., Church, W., Wong, R.
(2004). Informative 3D Visualization Of
Multiple Protein Structures. Second Conference
on Asia-Pacific Bioinformatics (APBC 2004),
Australia: Australian Computer Society.
Dastmalchi, S., Church, W., Morris, M., Iismaa,
T., Mackay, J. (2004). Presence of transient
helical segments in the galanin-like peptide
evident from 1H NMR, circular dichroism, and
prediction studies. Journal of Structural Biology,
146(3), 261-271.
2003
Shui, W., Wong, R., Graham, S., Lee, L.,
Church, W. (2003). A new approach to protein
structure and function analysis using
semi-structured databases. Journal of Research
and Practice in Information Technology, 19(-),
61-69.
Barry, J., Leong, G., Church, W., Issa, L.,
Eisman, J., Gardiner, E. (2003). Interactions of
SKIP/NCoA-62, TFIIB, and Retinoid X
Receptor with Vitamin D Receptor Helix H10
Residues. Journal of Biological Chemistry,
278(10), 8224-8228.
2002
Kwok, J., Kapoor, R., Gotoda, T., Iwamoto, Y.,
Iizuka, Y., Yamada, N., Isaacs, K., Kushwaha,
V., Church, W., Schofield, P., et al (2002). A
Missense Mutation in Kynurenine
Aminotransferase-1 in Spontaneously
Hypertensive Rats. Journal of Biological
Chemistry, 277(39), 35779-35782.
Dastmalchi, S., Kobus, F., Iismaa, T., Morris,
M., Church, W. (2002). Comparison of the
transmembrane helices of bovine rhodopsin in
the crystal structure and the C α template based
on cryo-electron microscopy maps and sequence
analysis of the G protein-coupled receptors.
Molecular Simulation, 28(8), 845-851.
Church, W., Jones, K., Kuiper, D., Shine, J.,
Iismaa, T. (2002). Molecular modelling and
site-directed mutagenesis of human GALR1
galanin receptor defines determinants of receptor
subtype specificity. Protein Engineering, 15(4),
313-323.
2001
Church, W., Inglis, A., Tseng, A., Duell, R., Lei,
P., Bryant, K., Scott, K. (2001). A novel
approach to the design of inhibitors of human
secreted phospholipase A2 based on native
peptide inhibition. Journal of Biological
Chemistry, 276(35), 33156-33164.
Dastmalchi, S., Morris, M., Church, W. (2001).
Modeling of the structural features of
integral-membrane proteins using
reverse-environment prediction of integral
membrane protein structure (REPIMPS). Protein
Science, 10(8), 1529-1538.