BIO 340/343 INTRODUCTION TO GENETICS LECTURER: Dr. Lisa Dorn Spring 2008 OFFICE: HS 45; LAB: HS 47 PHONE: 424-3064; E-MAIL: dorn@uwosh.edu OFFICE HRS: Mon 1:50pm to 3:50pm, Friday 1:50 to 3:50pm LECTURE HOURS: 9:10 – 10:10 am in Halsey Science Building; Rm. 57 TEXT: Brooker, Genetics: Analysis & Principles (2nd edition) McGraw Hill. OBJECTIVES: Genetics and its experimental methods is one of the broadest and most rapidly evolving fields of science. I cannot possibly cover it all, so my goal is to teach you how to think like a geneticist, while learning genetics concepts so that you can judge for yourself the value of emerging genetic technologies and discoveries. This course covers Mendelian genetics and its complications, the molecular basis of genes and their affect on phenotypes, the methods of identifying and characterizing the genetic basis of diseases and other phenotypes as well as population and evolutionary genetics. The prerequisites for this course are Bio105 and 323, which by extension means you have taken Chem 105 and 106 as well as Bio111. The laboratory part of this course will expand on what you have learned in Molecular and Cell Biology (Bio 323). I will assume you have mastered the Bio323 material and will not waste much time reviewing this material but there will be some review of 323 materials in lab. ASSESSMENT: How are you going to earn your grade? EXAMS: 4 exams each worth 100 points. They will be mostly problems similar to those in your D2L quizzes. (400 total points). PROBLEM SOLVING: There will be 8 D2L problem-solving sessions where you will be required to solve problems that will be available on D2L. Worth 10 points each (total = 80 points). These problems are presented as quizzes. The problems will be available 1 week before they are due. During those days, you may discuss potential solutions with your peers and me but once you submit your answer you cannot change them. You can only see the answers after the submission deadline. ***IMPORTANT***: D2L was behaving very badly last semester. Do not wait for the last hour to submit your answers. If D2L crashes while you are submitting your answers and you subsequently miss the deadline, I can help you on a case-by-case basis but I will do so only once. To help alleviate this problem I will direct D2L to allow late submissions but it will flag these submissions. If too many students are late repeatedly, I will remove this feature. However, I may on occasion extend the deadline for a specific quiz if there are questions that require last minute lecture material. EXTRA CREDIT QUIZZES: There will be one extra credit quiz at the end of the semester worth 5 points. Besides the extra credit, it will be very similar to questions you will find on the last exam so I highly recommend that you do this. *NOTE: If extra credit points from this quiz are the only way to pass the course that is acceptable. HOWEVER, you will be offered extra credit points for attending the Celebration of Scholarship in April and these points can not be used to pass the course.* LABORATORY: Is worth 105 points. The lab syllabus is available separately. Total Possible points = 585. 92 – 100% = A, 89-91% = AB, 82-88% = B, 79-81% = BC, 72 – 78% = C, 68 – 71% = CD, 67 – 60% = D, below 60 = F. Disputing a grade: if you feel your exam has been misgraded, you must submit to me a request for re-grade within a week of the day I have passed exams back (not the day you picked it up). That request must be in writing accompanied by a copy of the exam in question that I will keep. Students With Disabilities are welcome in this class! If you need special accommodations please contact me during office hours in the first week of class. This includes students with diagnosed learning disabilities. If you feel you should be evaluated for a learning disability please contact the Project Success office at 920 4241033 or go to their website at http://www.uwosh.edu/organizations/success. Classroom Etiquette: please silence all pagers and cell phones; do not talk or whisper unless called upon in turn (but feel free to raise your hand for a question or comment at ANY time!). Incomplete Grades may be given in extreme circumstances, such as when a student becomes too ill to complete the semester's work. Please talk to me if you think your situation warrants an "I" grade and be prepared to provide documentation. Late Assignment Submissions may be penalized up to one grade point (e.g. from a B to a C) at the Instructor's discretion. Make up exams. If you cannot make one exam several alternatives may be available to you depending on the rest of my teaching obligations at that time. I will do what I can, given your circumstance. If you know ahead of time that you must miss an exam (for instance if your job requires that you work that day) please let me know ahead of time. The schedule of lectures, exams and due dates for problems. There may be minor changes to this schedule without notice. I will announce such changes in class. Lec # Day Date 1 Monday 4-Feb Mendels Laws; Monohybrids & Dihybrid Crosses Chapter 2 1 2 Wed 6-Feb Dihybrid Crosses & Pedigrees Chapter 2 1 3 Friday 8-Feb Pedigree Analysis; Probability Rules chi square Test Chapter 2 1 4 Monday 11-Feb Chromosomes; Meiosis & Mendel's rules Chapter 3: 2 5 Wed 13-Feb Sex chromosomes; Sex-Linked Traits Chapter 3: 2 Thursday 14-Feb 6 Friday 15-Feb Sex determination; recessive Lethals Chapter 3/4 2 7 Monday 18-Feb Pleiotropy; Incomplete Dominance; co-dominance Chapter 4 3 8 Wed 20-Feb Overdominance, Penetrance Chapter 4 3 9 Friday 22-Feb Complementation, Gene Interactions Chapter 4 3 10 Monday 25-Feb Linkage and Recombination; Wed 27-Feb EXAM 1 (covers up to lecture 9) 2 & 3, part 4 4 11 Friday 29-Feb Linkage and Recombination; Chapter 5 4 12 Monday 3-Mar Mapping genes: dihybrid crosses Chapter 5 5 13 Wed 5-Mar Trihybrid crosses Chapter 5 5 14 Friday 7-Mar Intragenic Mapping, bacteriophage Chapter 6 5 Saturday 8-Mar 15 Monday 10-Mar Complementation tests and deletion mapping Chapter 6 6 16 Wed 12-Mar Complementation tests and deletion mapping; Chapter 6 6 17 Friday 14-Mar Complementation tests and deletion mapping; Chapter 6 6 18 Monday 17-Mar Chromosomes: Change in Number Chapter 8 7 Wed 19-Mar Exam 2 (covering lectures 10 to 17) Friday 21-Mar Chromosomes: Structure; Natural Variation & Mutations Monday 24-Mar SPRING BREAK 8 Wed 26-Mar SPRING BREAK 8 Thursday 27-Mar SPRING BREAK 8 Friday 28-Mar SPRING BREAK 8 20 Monday 31-Mar Chromosomes: Polyploidy Chapter 8 9 21 Wed 2-Apr Gene Mutation chapter 16 9 23 Friday 4-Apr Gene Mutation chapter 16 9 24 Monday 7-Apr Gene Mutation chapter 16 10 25 Wed 9-Apr Transcription Chapter 12 10 Thursday 10-Apr Friday 11-Apr Chapter 12 10 19 26 Topics Book 2 Quiz 1 Due Quiz 2 Due Week Chapter 5 4 Quiz 3 Due Quiz 4 Due 7 Chapter 8 7 Quiz 5 Due Post-Transcriptional Processing 27 Monday 14-Apr Post-Transcriptional Processing Chapter 12 11 28 Wed 16-Apr Transcriptional Regulation in Eukaryotes Chapter 15 11 29 Friday 18-Apr Transcriptional Regulation in Eukaryotes Chapter 15 11 30 Monday 21-Apr Transcriptional Regulation in Eukaryotes Chapter 15 12 31 Wed 23-Apr Non-Mendelian Inheritance: chapter 7 12 Friday 25-Apr 'EXAM 3 ( Lectures 18 to 30) 32 Monday 28-Apr Non-Mendelian Inheritance: chapter 7 13 33 Wed 30-Apr Non-Mendelian Inheritance Ch. 7/24 13 34 Friday 2-May Population Genetics Ch. 25 13 Saturday 3-May 35 Monday 5-May Population Genetics Ch 25 14 36 Wed 7-May Population Genetics Ch 25 14 Thursday 8-May Friday 9-May Saturday 10-May Monday 12-May Population Genetics/ Review Wed 14-May EXAM 4 (Lectures 31-40) 37 38 Quiz 6Due 12 Quiz 7 Due 14 Population Genetics Ch 25 14 Ch 25 15 Quiz 8 Due EC Quiz 9 Due 15