Course Syllabus Microbiology BIOL 2420 Semester with Course Fall 2015 70443 Reference Number (CRN) Instructor contact information (phone number and email address) Dalton R. McWhinney, Ph.D. 713-718-2540 (P) 713-718-6211 (F) dalton.mcwhinney@hccs.ed Office Location and Hours Learning Hub Science Building (LHSB), RM 401 Monday, Wednesday and Thursday 1:00-2:30 PM Course Location/Times Learning Hub Science Center RM 307 Tuesday/Thursday 5:30 AM – 8:30 PM Course Semester Credit Hours (SCH) (lecture, lab) If applicable Credit Hours: 4 Lecture Hours: 3 Laboratory Hours: 3 External Hours: Total Course Contact Hours 96.00 Course Length (number of weeks) 16 Type of Instruction Lecture and laboratory Course Description: Study of the morphology, physiology, and taxonomy of representative groups of pathogenic and nonpathogenic microorganisms. Pure cultures of microorganisms grown on selected media are used in learning laboratory techniques. Includes a brief overview of food microbes, public health, and immunology. Core Curriculum course Course Prerequisite(s) PREREQUISITE(S): BIOL 1406 College-level reading (or take GUST 0342) and Academic Discipline/CTE Program Learning Outcomes College-level writing (or take ENGL 0310/0349) PSLO#1 - Will display an understanding of biological systems and evolutionary processes spanning all ranges of biological complexity, including atoms, molecules, genes, cells, and organisms. PSLO#2 - Will integrate factual and conceptual information into an understanding of scientific data by written, oral and/or visual communication. (This may include successful completion of a course-specific research project or a case study module). PSLO#3 - Will demonstrate proficiency and safe practices in the use of laboratory equipment and basic laboratory techniques. PSLO#4 - Will apply principles of the scientific method to problems in biology in the collection, recording, quantitative measurement, analysis and reporting of scientific data. Course Student Learning Outcomes (SLO): Bio 2420 - LECTURE 1. Provide examples of the impact of microorganisms on agriculture, environment, ecosystem, energy, and human health, including biofilms. 2. Identify unique structures, capabilities, and genetic information flow of microorganisms. 3. Compare the life cycles and structures of different types of viruses. 4. Discuss how microscopy has revealed the structure and function of microorganisms. 5. Give examples of the range of metabolic diversity exhibited by microorganisms, impact of metabolic characteristics on growth, and control of growth. 6. Describe the causes and consequences of mutations on microbial evolution and the generation of diversity as well as human impacts on adaptation. 7. Classify interactions of microorganisms on human and non-human hosts as neutral, detrimental, or beneficial. Bio 2420 - LABORATORY 1. Apply scientific reasoning to investigate questions and utilize scientific tools such as microscopes and laboratory equipment to collect and analyze data. 2. Use critical thinking and scientific problem-solving to make informed decisions in the laboratory. 3. Communicate effectively the results of scientific investigations. 4. Identify unique structures and capabilities of microorganisms. 5. Compare the life cycles of different types of viruses. 6. Discuss how microscopy has revealed the structure and function of microorganisms. 7. Give examples of the range of metabolic diversity exhibited by microorganisms, impact of metabolic characteristics on growth, and control of growth. 8. Classify interactions of microorganisms on human and non-human hosts as neutral, detrimental, or beneficial. Learning Objectives (Numbering system should be linked to SLO - e.g., 1.1, 1.2, 1.3, etc.) Bio 2420 - LECTURE 1. Provide examples of the impact of microorganisms on agriculture, environment, ecosystem, energy, and human health, including biofilms. 2. Identify unique structures, capabilities, and genetic information flow of microorganisms. 3. Compare the life cycles and structures of different types of viruses. 4. Discuss how microscopy has revealed the structure and function of microorganisms. 5. Give examples of the range of metabolic diversity exhibited by microorganisms, impact of metabolic characteristics on growth, and control of growth. 6. Describe the causes and consequences of mutations on microbial evolution and the generation of diversity as well as human impacts on adaptation. 7. Classify interactions of microorganisms on human and non-human hosts as neutral, detrimental, or beneficial. Bio 2420 - LABORATORY 1. Apply scientific reasoning to investigate questions and utilize scientific tools such as microscopes and laboratory equipment to collect and analyze data. 2. Use critical thinking and scientific problem-solving to make informed decisions in the laboratory. 3. Communicate effectively the results of scientific investigations. 4. Identify unique structures and capabilities of microorganisms. 5. Compare the life cycles of different types of viruses. 6. Discuss how microscopy has revealed the structure and function of microorganisms. 7. Give examples of the range of metabolic diversity exhibited by microorganisms, impact of metabolic characteristics on growth, and control of growth. 8. Classify interactions of microorganisms on human and non-human hosts as neutral, detrimental, or beneficial. SCANS and/or Core Curriculum Competencies: If applicable Core Curriculum Competencies: Lecture exams, laboratory practical exams, and class activities will enhance the learning process by giving the student the opportunity to demonstrate the basic intellectual competencies of reading, writing, speaking, listening, and showing critical thinking and problem solving ability. Instructional Methods In class lectures supplement with the use of power point and video; in class group discussion Date Chapter Topics 8/25 1 History of Microbiology 9/08 2 Chemistry of Microbiology(optional) 9/08 3 Cell Structure & Function 9/08 4 Microscopy, Staining and Classification 9/15 5 Microbial Metabolism 9/15 6 Microbial Nutrition and Growth 9/22 Exam 1 [Ch. 1-6] 9/29 7 Microbial Genetics 9/29 8 Recombinant DNA Technology 10/06 9 Controlling Microbial Growth in the Environment 10/06 10 Controlling Microbial growth in the body Antimicrobial Drugs 10/13 Exam 2 [Ch. 7-10] 10/13 LAB EXAM I 10/20 11 Characterizing and Classifying Prokaryotes 10/27 12 Characterizing and Classifying Eukaryotes 10/27 13 Characterizing and Classifying Viruses, Viroids and Prions 11/03 Exam 3 [Ch. 11-13] 11/03 14 Infections, Infectious Disease and Epidemiology 11/10 15/16 Innate Immunity/Adaptive Immunity 11/17 17 Immunization and Immune Testing 11/24 Exam 4 – Course Final [Ch. 14-17] 12/01 LAB EXAM II 12/08 Departmental FINAL EXAM, Comprehensive Student Assignments Bio 2420 - LECTURE 1. Provide examples of the impact of microorganisms on agriculture, environment, ecosystem, energy, and human health, including biofilms. 2. Identify unique structures, capabilities, and genetic information flow of microorganisms. 3. Compare the life cycles and structures of different types of viruses. 4. Discuss how microscopy has revealed the structure and function of microorganisms. 5. Give examples of the range of metabolic diversity exhibited by microorganisms, impact of metabolic characteristics on growth, and control of growth. 6. Describe the causes and consequences of mutations on microbial evolution and the generation of diversity as well as human impacts on adaptation. 7. Classify interactions of microorganisms on human and non-human hosts as neutral, detrimental, or beneficial. (Includes immunity) Bio 2420 - LABORATORY 1. Apply scientific reasoning to investigate questions and utilize scientific tools such as microscopes and laboratory equipment to collect and analyze data. 2. Use critical thinking and scientific problem-solving to make informed decisions in the laboratory. 3. Communicate effectively the results of scientific investigations. 4. Identify unique structures and capabilities of microorganisms. 5. Compare the life cycles of different types of viruses. 6. Discuss how microscopy has revealed the structure and function of microorganisms. 7. Give examples of the range of metabolic diversity exhibited by microorganisms, impact of metabolic characteristics on growth, and control of growth. 8. Classify interactions of microorganisms on human and non-human hosts as neutral, detrimental, or beneficial. (Includes immunity) Student Assessment(s) Exams: There will be a total of four lecture exams (including course final) and one departmental final exam given to you. Each exam will contain a number (50-70) of multiple-choice, true-false, matching and fill in the blank questions and essays. Multiple Choice questions have to be answered on the scantron. Each exam has an equal value (100 pts each). The final exam is not cumulative but is mandatory. The departmental final Exam is cumulative. Out of the four lecture exams you have a choice to drop one. Your lowest grade automatically becomes your drop grade. You will not drop your final exams. If you miss an exam, that becomes your drop grade. If you miss two exams, you get a zero in one exam. Quizzes: You will be given an on line quiz week before each lecture exam. Each quiz will consist of 25 questions taken from the chapters that are included in that exam (for example; quiz 1 will include chapters 1, 3, 4). The quizzes will be open book and will be worth 25 points each. The quizzes will be made available to you only for a limited duration of time and you will be allowed to take the quiz once only, hence attempt the quizzes only after going through the chapters. If you arrive late for an exam, you will have only the time remaining from the official start of the exam. THERE WILL BE NO MAKEUP EXAMS unless you can prove you had to go to court or were seen by a doctor on the day of the exam. On a test day, once someone has finished the exam, no other student may enter and start that exam. So, if you are late for class on a test day, you may be prohibited from taking the test. Laboratory exam: Two laboratory tests will be given, each worth 100 points. You CAN NOT drop the lab exam; therefore if you miss it, you will be given a zero for the exam. Everything that is covered during the lab sessions will be included in the lab exams. There is absolutely no make up for the lab exam. Lab exam review: There will be a review session a week before each lab exam. The lab study pages for review are also available at the following site. http://imc02.hccs.edu/BiologyLabs/index.html Assignments: You will also use an additional online site called Mastering Biology which is provided by the publisher of your text. On this website you will work on assignments. You need two different codes to use Mastering: If you bought a new textbook through the HCC bookstore, you already have the code you need to get into the Mastering Biology site: it is packaged with your textbook. If you have not yet bought a text and wish to buy an e-text, it will also include the code for Mastering. E-book can be purchased from: http://www.masteringbiology.com If you have purchased a used book, the access code is not included in it. Access code can be purchased from: www.masteringbiology.com The other information you will need is my Mastering course number;central90174 You are required to complete ALL assignments. They are worth 100 points. Instructor's Requirements CELL PHONES, PAGERS AND OTHER ELECTRONIC DEVICES: All electronic devices including cell phones, pagers, BlackBerrys or iPods should be switched OFF (NOT on vibrate) and put away during class time and during all exams. Answering cell phones and texting are not permitted during class time. Texting during class indicates that you are not actively involved in the learning process, and will earn you an absence for that class. Please remove ear buds during class. If you anticipate a potential emergency situation, please talk to me before class starts so that we can make the necessary arrangements for that particular day. Use of recording devices, including camera phones and tape recorders, is prohibited in classrooms, laboratories, faculty offices, and other locations where instruction, tutoring, or testing occurs. Students with disabilities who need to use a recording device as a reasonable accommodation should contact the Office for Students with Disabilities for information regarding reasonable accommodations Reminder: Under no circumstances should any electronic devices be out or used during the exams. Anyone found using these devices will have their exam taken up, and will receive a score of “0” for the test. TARDIES AND LEAVING EARLY: Talking and moving during class time is a distraction to your classmates and to your instructor. So please plan to attend class on time and to leave only at the end of the period. Understandably, emergencies can happen that result in your tardiness or early departure. Please speak to me in this regard so that you can be excused for your late arrival or early departure on a particular day. However, please do not make a habit of being tardy or leaving early since this will be reflected as an unexcused absence from class. ACADEMIC INTEGRITY: Students are expected to do their own work diligently and honestly. Anything that is suspected to be cheating will result in a grade of zero. Biology Department Rules and Regulations All students are to read, understand and follow the following rules and regulations. -Textbook and lab manual are required -Full class attendance is required. Students with more than four (4) unexcused absences may result in an administrative withdrawal. Students are responsible for everything covered during their absence. -To avoid disruption in the classroom, all pagers must be set on the silent mode. Cellular phones must also be turned off during the class period. -No children are allowed in the classroom -Eating, drinking or smoking is NOT allowed in the laboratory -You must read the laboratory safety rules before doing any of the lab exercises -The laboratory safety release form must be signed during the first lab session. -Grades will not be posted at any time during the semester. You may receive your final grade at the end of the semester from the Biology Dept. (LHSB 402). Proper identification is required to receive the final grade. The transcripts will be mailed to you by the HCC System office after the information has been entered in the computer. -Cheating is not permitted. If it occurs, the student may receive a zero for the exam or a grade of F in the course. -Students who require reasonable accommodations for disabilities are encouraged to report to room LHSB108 or call 713-718-6164 to make necessary arrangements. Faculty is only authorized to provide accommodations requested by the Disability Support Services Office. COMMUNICATION: Announcements will appear on the homepage of the EO, EO e-mail and/or announced during the lab sessions. Please check EO email and the homepage frequently (at least twice per week). If you miss a lab session, check with someone in class for the missed work. If you have any question, e-mail me at dalton.mcwhinney@hccs.edu. Program/Discipline Requirements: If applicable HCC Grading Scale: A = 100- 90 B = 89 - 80: C = 79 - 70: D = 69 - 60: 59 and below = F FX (Failure due to non-attendance) IP (In Progress) W (Withdrawn) I (Incomplete) AUD (Audit) 4 points per semester hour 3 points per semester hour 2 points per semester hour 1 point per semester hour 0 points per semester hour 0 points per semester hour 0 points per semester hour 0 points per semester hour 0 points per semester hour 0 points per semester hour IP (In Progress) is given only in certain developmental courses. The student must reenroll to receive credit. COM (Completed) is given in non-credit and continuing education courses. FINAL GRADE OF FX: Students who stop attending class and do not withdraw themselves prior to the withdrawal deadline may either be dropped by their professor for excessive absences or be assigned the final grade of "FX" at the end of the semester. Students who stop attending classes will receive a grade of "FX", compared to an earned grade of "F" which is due to poor performance. Logging into a DE course without active participation is seen as non-attending. Please note that HCC will not disperse financial aid funding for students who have never attended class. Students who receive financial aid but fail to attend class will be reported to the Department of Education and may have to pay back their aid. A grade of "FX" is treated exactly the same as a grade of "F" in terms of GPA, probation, suspension, and satisfactory academic progress. To compute grade point average (GPA), divide the total grade points by the total number of semester hours attempted. The grades "IP," "COM" and "I" do not affect GPA. Health Sciences Programs Grading Scales may differ from the approved HCC Grading Scale. For Health Sciences Programs Grading Scales, see the "Program Discipline Requirements" section of the Program's syllabi. Instructor Grading Criteria GRADE COMPUTATION OF EXAMS AND ASSIGNMENT: 4 Lecture Exams 2 Lab Exams Mastering Assg Quiz /PPT Dept. Final 100 pts each 100 pts each 100 pts 100 pts 100 pts (10%) Late assignments may not be accepted. If late assignments are accepted, they will be accepted at the instructor’s discretion, a penalty of 5 points per day will incur. There will be no make up for exams with exception of presented doctor’s excuse. Grading 90-100 80-89 70-79 60-69 59 & < A B C D F 4 Exams including Final Exam = 100 pts each for a total of 400 points. There will be 2 laboratory Exams valued at 100 points each. These 600 points represents 70% (seventy-five percent) of your final grade. Mastering assignments, other activities and pop quizzes represent 20% of your grade. This number is yet underdetermine and is based upon the final # of pop quizzes. One departmental exam is worth 10% of the grade. Instructional Materials Textbook – Microbiology with Disease by Taxonomy, Fourth edition 2014, by Robert W. Bauman Laboratory manual – Microbiology Houston Community College System 5.5 edition Donna S. Wiersema, M.S. and Pramila Sen, Ph.D. HCC Policy Statement: Access Student Services Policies on their Web site: http://hccs.edu/student-rights EGLS3 -- Evaluation for Greater Learning Student Survey System At Houston Community College, professors believe that thoughtful student feedback is necessary to improve teaching and learning. During a designated time near the end of the term, you will be asked to answer a short online survey of research-based questions related to instruction. The anonymous results of the survey will be made available to your professors and department chairs for continual improvement of instruction. Look for the survey as part of the Houston Community College Student System online near the end of the term. Distance Education and/or Continuing Education Policies Access DE Policies on their Web site: http://de.hccs.edu/Distance_Ed/DE_Home/faculty_resources/PDFs/DE_Syllabus.pdf Access CE Policies on their Web site: http://hccs.edu/CE-student-guidelines