Bacteriophage lambda (l) Transcriptional switches can regulate cellular decisions Lysis or Lysogeny • Lysis: Infection by phage produces many progeny and breaks open (lyses) the host bacterium • Lysogeny: After infection, the phage DNA integrates into the host genome and resides there passively – No progeny – No lysis of the host – Can subsequently lyse (lysogeny) • Bacteriophage lambda can do either. UV Induction Lysis Lysogeny Lysogeny: CII and CIII stimulate expression of cI to make repressor + CII att int gam red xis cIII N tint Pint Int + CIII tL1 cI cro CII cII O P Q PL oL PRM PR tR1 PRE oR CI Repressor SR A…J tR2 PR‘ t6S tR3 PRE = promoter for repression establishment Lysogeny: Repressor turns off transcription CI att int gam red xis cIII N Pint tL1 CI cI cro cII O P Q PL oL PRM PR tR1 PRE oR CI Repressor SR A…J tR2 PR‘ t6S tR3 PRM = promoter for repression maintenance Activated by Repressor binding to oR1 & oR2 l operators overlap promoters oR : oR3 oR2 oR1 PR -35 TTGACT -10 GATAAT cro N TTAGAT 5’ -10 ATAGAT 5’ -35 PRM Repressor structure l repressor is a dimer; monomer has 236 amino acids. C-terminal domain: protein-protein interaction; dimerization and cooperativity Connector N-terminus: DNA binding; Helix-Turn-Helix motif operator l repressor can bind cooperatively to operator sub-sites. operator oR2 operator oR1 l-lac hybrid genes Place l cI gene under lac control. lac p, o l cI Use lacZ as a reporter. l pR , OR lacZ 321 Control amount of l repressor by [IPTG]. E. coli with lac repressor, no lacZ. See effect of l repressor by b-galactosidase activity Repressor stimulates transcription from PRM lac p, o l cI l pRM , OR lacZ 123 b-galactosidase l repressor [IPTG] l repressor at oR1 and oR2 stimulates transcription from pRM. Binding of repressor blocks transcription from pR but activates pRM PR -35 -10 oR3 N 2 dimers of Repressor, bound cooperatively cro RNA Pol -10 oR2 oR1 -35 = operator PRM -35 -10 = promoter Events at initiation of transcription Abortive initiation assay Let R = RNA polymerase, P = promoter (closed), and Po= promoter (open) R+P KB RP kf kr [ApUp*U] ATP + UTP* RPo ApUp*U lag time Abortive transcripts Measure kf and KB from lag time vs. 1/[R] Lag time in abortive initiation assay is inversely proportional to [R]. Lag time = 1 KB kf x 1 [R] Lag time Y-intercept = 1 kf + 1 kf Slope = 1 [R] 1 KB kf Effect of wild-type and pc mutant λ repressors on activity of PR & PRM Effect of Operator Mutations on Transcriptional Control of PR&PRM OR1-OR2+OR3- OR1+OR2-OR3+ Effect of λ-pc mutations on KB and k2 Architecture of λOR Mutations in the Activating Region of λ Repressor Glu Glu Glu Mutations in the δ subunit of RNA polymerase that interfere w/λ repressormediated activation of PRM transcription Effect of mutations in the δ subunit of RNA polymerase on activator-dependent and independent transcription of the lac promoter A model for interaction of the δ subunit of RNA polymerase with λ repressor The Awesome Power of Genetics