2012-2013 Calendar Proof BIOLOGY In the four digit number description of Biology courses taught on the Saint John campus the following code applies: 1st digit specifies year in which course is normally taken. 2nd and 3rd digits designate the particular course. 4th digit designates the duration of the course as follows: 0 Course extends over both terms 1 Term course offered in first term 2 Term course offered in second term 3 Field course offered outside normal session 5 Term course offered in either first or second term * indicates laboratory sessions are given on alternate weeks. Prerequisites All prerequisite courses must be passed with a minimum grade of C. BIOL 1205 or equivalent is a prerequisite for all courses in Biology except 1105 , 1202 , 1411 , 1412 ,1416 , 1417 , 1551 , 2831 and 2852 . Note: See beginning of Section F for abbreviations, course numbers and coding. BIOL 1017 Applications in Biology, Part II 2 ch (3L) Instruction and laboratory work dealing with the applications of Biology at the level of biological molecules, the cell and organisms. BIOL 1105 Biological Principles, Part I 3 ch (3C) Ecology and evolution of selected plants, animals, and additional organisms. Topics include ecosystems and ecological interactions, and adaptations in the contest of the organisms’ environment. Note: Students intending to major in Biology must take BIOL 1017and BIOL 1205 . Credit can be obtained for only one of BIOL 1012 or 1105. BIOL 1202 Introductory Marine Science 3 ch (3C) An introduction to the physical, chemical, and biological aspects of marine environments. Marine management issues and laws will be discussed. BIOL 1205 Biological Principles, Part II 3 ch (3C) Considers the chemistry of life, maintenance of cells and organisms, energy utilization, genetic information, reproductive continuity and mechanisms of evolution. Note: This course is designed for science students or other students planning to major in Biology. Credit can be obtained for only one of BIOL 1205, 1001 or BIOL 1551 . BIOL 1302 Introduction to Environmental Biology 3 ch (3C) 2012-2013 Calendar Proof Introduction to issues in environmental biology, including ecosystem health, sustainable development, environmental law, multi-stakeholder decision-making, etc. The course will use a case study method to examine local and global effects of human activity on the earth’s ecology and human society, focussing on environmental concerns of coastal regions. Prerequisites: BIOL 1105 , ECON 1013 . BIOL 1411 Anatomy & Physiology I 3 ch (3C) Basic concepts in human anatomy and physiology, with an emphasis on the normal condition. Prerequisite: Chem 122 and Biology 122. BIOL 1412 Anatomy & Physiology II 3 ch (3C) A continuation of BIOL 1411 , basic concepts in human anatomy and physiology, with an emphasis on the normal condition. Prerequisite: BIOL 1411 or BIOL 1441 . BIOL 1441 Human Anatomy and Physiology I 4 ch (3C 3L) Basic concepts in human anatomy and physiology with an emphasis on the normal condition. This course includes a selection of appropriate laboratory exercises. For Nursing students only. Prerequisite: CHEM 122 and BIOL 122. BIOL 1442 Human Anatomy and Physiology II 4 ch (3C 3L) Continuation of BIOL 1441 , basic concepts in human anatomy and physiology with an emphasis on the normal condition. This course includes a selection of appropriate laboratory exercises. For Nursing students only. Prerequisite: BIOL 1441 . BIOL 1551 Principles of Biology, Part I 3 ch (3C) Part I deals with cell structure and function, nutrition, metabolism, classical and molecular genetics and reproduction. Designed for students in the Faculties of Education, Kinesiology and those students in the Faculty of Arts not planning on majoring in Biology. A background knowledge of elementary chemistry is recommended. Note: Credit cannot be obtained for both BIOL 1205 and BIOL 1551. BIOL 1605 Introduction to Geographic Information Systems and Applications 3 ch (2C 2L) A general introduction to the theory, methods and applications of Geographic Information Systems (GIS). Students will learn the basics of GIS and how to acquire, display, edit, and analyze spatial data with specialized software. GIS is an interdisciplinary field, so students from all faculties may find this course useful. BIOL 2015 Introductory Genetics 4 ch (3C 3L*) [W] History of genetics, Mendelian genetics, chromosome theory of inheritance, sex determination and linkage, extensions of Mendelian analysis, genetic linkage, crossing-over, genetic mapping, extranuclear genetics, quantitative and population genetics. Prerequisites: BIOL 1205 (or BIOL 1551 with a grade of B or higher) and BIOL 1105 and BIOL 1017 . BIOL 2065 Introductory Biochemistry (Cross-listed: CHEM 2065) 4 ch (3C 3L*) [W] 2012-2013 Calendar Proof Protein structure and function, techniques for protein analysis, examples of important proteins, mechanisms and regulations of enzymatic activity, metabolism (basic concepts and design, followed by the study of a few pathways). Prerequisites: BIOL 1205 (orBIOL 1551 with a grade of B or higher) and BIOL 1105 and BIOL 1017 , additionally CHEM 1041 , CHEM 1046 , CHEM 1072 and CHEM 1077 . BIOL 2125 Introductory Botany 5 ch (3C 3L) Introduces botanical principles and processes. Includes basic anatomy and morphology on a range of scales: cellular structure and processes, tissues, organs, and their functions. Prerequisites: BIOL 1205 (or BIOL 1551 with grade of B or higher) and BIOL 1105and BIOL 1017 . BIOL 2135 Introductory Botany for Non-Biologists 3 ch (3C 3T) Introduces botanical principles and processes. Includes basic anatomy and morphology on a range of scales: cellular structure and processes, tissues, organs and their functions. Students are required to attend weekly laboratory/tutorial sessions, but will not write laboratory exam or assignments. This course is not equivalent to BIOL 2125 for credit toward a BSc, but serves as an acceptable prerequisite for BIOL 3275 , 3353 , 3355 or 3541 in place of BIOL 2125 . Credit will not be granted for both BIOL 2125and BIOL 2135. Prerequisites: BIOL 1205 or BIOL 1551 with grade of B or higher, or Grade 12 Biology with 80% or higher and permission of the instructor. BIOL 2245 Introductory Molecular Cell Biology 4 ch (3C 3L*) Studies cell membranes, motility and sensory systems; gene regulation and molecular embryology; DNA, RNA, protein synthesis, viruses and molecular genetics. Prerequisites: BIOL 1205 (or BIOL 1551 with a grade of B or higher) and BIOL 1105 and BIOL 1017 . BIOL 2385 Fundamentals of Microbiology 3 ch (3C) Introduction to the fundamental concepts of infectious disease Microbiology. Discusses bacteria, fungi, viruses, protoza, helminths and anthropods. NOTE: This course cannot be taken by BSc majors in General Biology, Environmental Biology, or Marine Biology. Credit can only be obtained for one of BIOL 2485 , BIOL 3251 , BIOL 2385 . Prerequisites: BIOL 1205 (or BIOL 1551 with a grade of B or higher), BIOL 1105 and BIOL 2245 ; one of BIOL 3055 , BIOL 3536 , BIOL 4775 ; or instructor's permission. BIOL 4373 Tropical Marine Biology Field Course 3 ch An examination of tropical coastal ecosystems. The course will focus on the ecology of coral reefs, tropical fish ecology and physiology, tropical seaweed biology and mangrove ecology. The course consists of lectures, fieldwork and laboratory work. Prerequisite: BIOL 3173 or equivalent; or permission of instructor. BIOL 4435 Biologically Active Natural Products and Secondary Metabolism (Cross-listed:CHEM 4435) 3ch (3C) This course will examine the biosynthesis, biological activity and ecological significance of secondary metabolites. The following topics will include: t he links between primary and secondary metabolic pathways; an overview of the mechanisms, chemistry and coenzymes involved in the biosynthesis of natural products; the acetate pathway; the Shikimate pathway; the mevalonate and methyl erythritol phosphate pathways; the alkaloids and chemical ecology. Note: This course may be listed as either BIOL 4435 orCHEM 4435 . 2012-2013 Calendar Proof Credit cannot be obtained for both BIOL 4435 and CHEM 4435 . Pre-requisites: CHEM 2422 and BIOL 2065 . BIOL 4445 Marine Behavioural Ecology 3 ch ( 3C) Explores the relationship between animal behaviour, ecology and evolution. Theoretical concepts covered include the economics of animal decision making, predator-prey relationships, competition, fighting and assessment, sexual conflict and sexual selection, parental care and mating systems, alternative breeding strategies, altruism and cooperation, Whenever possible marine organisms, and particularly invertebrates will be used to illustrate theoretical concepts. Prerequisite: BIOL 2585 Introductory Ecology. BIOL 4585 Quantitative Ecology (A) 3 ch (2C 2T) The development and application of fundamental models in ecology. Topics include: population dynamics, competition, predator-prey relationships and community models (both mechanistic and systems approaches). Prerequisite: BIOL 2585 . BIOL 4592 Aquaculture (A) 5 ch (3C) The history, practice and future of aquaculture, with particular emphasis on development of finfish aquaculture in Atlantic Canada. Topics include: biology of growth, culture of live feed, hatchery techniques, health, nutrition, engineering and economics. Limited enrollment; preference will be given to Marine Biology Majors, then other students based on C.G.P.A. Prerequisite: BIOL 2585 . BIOL 4645 Biology and Conservation of Marine Mammals (A) 3 ch (3C) [W] The biology of seals, whales, and sea-cows. Life histories, behaviour, reproduction, and population estimation techniques will receive special emphasis. The biological, economic, and moral aspects of man’s direct and indirect influence on, and utilization of marine mammals will be discussed. Prerequisite: BIOL 2615 . BIOL 4693 Diversity and Systematics of Marine Invertebrates 4 ch Introduces basic techniques for invertebrate identification, monitoring and biodiversity assessment in rich and diverse invertebrate fauna of the Quoddy Region. Practical work includes shipboard sampling, field trips to coastal sites and laboratory exercises that present a broad overview of invertebrates of intertidal, plankton and subtidal benthic communities. The course is held at the Huntsman Marine Science Centre, St. Andrews, and is twelve days in length. A charge of tuition, full board and lodging is required. Prerequisites: BIOL 2615 or equivalent. BIOL 4775 Physiology of Marine Vertebrates (A) 3 ch (3C) A course on selected aspects of the comparative physiology of marine fishes, reptiles, birds and mammals. Prerequisite: BIOL 3055 . BIOL 4825 Introduction to Ecotoxicology (A) 4 ch (2C 3L) A theoretical and applied approach to the science of exotoxicology, including application of the tools and procedures used to understand toxicant fate and effects in ecosystems. Both field (ed. Community level environmental “effects” monitoring) and laboratory (eg. LC50 tests) methods for understanding contaminant fates and effects will be examined. 2012-2013 Calendar Proof Prerequisite:at least 20ch of Biology courses completed. BIOL 4855 Biometrics 4 ch (3C 2T) Students are introduced to methods of statistical analysis relevant to biological questions. Topics of study will include: experimental design, how to deal with noisy data (transformations); parametric and non-parametric tests; how to deal with missing data; regression (linear & non linear); statistical packages; and introduction to multivariate statistics (PCA and DFA). Prerequisite: STAT 2263 or equivalent. BIOL 4861 Advanced Environmental Biology (A) 4 ch (5C/L/S) Continuation of BIOL 1302 . The course will use case studies to explore environmental issues, focussing on the role of biologists in environmental studies and decision-making. Emphasis will be on the types of interactions required of biologists, economists, community members, activists, industrialists, lawyers, regulators, etc. in areas of environmental law, policy, and economics for integrated environmental and coastal zone management. Prerequisites: BIOL 1302 , ECON 2775 . BIOL 4875 Environmental Techniques (A) 4 ch (3C 3L*) A techniques course, in which students will have practical experience in sampling and analytical techniques, including: water, air and soil sampling; plant and animal sampling in field and lab; and chemical analyses of tissues and water, air and soil. Appropriate study design and statistical analyses of collected data will be emphasized. BIOL 4935 Comparative Animal Behaviour 3 ch (3C) Physiological bases of behaviour, the animal in relation to its environment, the animal in its social context, and the evolution of behavioural displays and activities. Emphasizes the adaptive significance of behavioural activities (ethology) rather than experimental psychology. Prerequisite: BIOL 2615 . BIOL 4945 Animal Communication 3 ch (3C) An examination of how vertebrate and invertebrate animals communicate via visual, acoustic, chemical and tactile means. Signal detection theory, redundancy, masking and information content will be discussed. Prequisite: 60 ch completed. ICS 2001 or Psyc 1003 recommended for non-BSc students