THE JOURNAL OF BIOLOGICAL CHEMISTRY © 2004 by The American Society for Biochemistry and Molecular Biology, Inc. Vol. 279, No. 18, Issue of April 30, pp. 18783–18791, 2004 Printed in U.S.A. A Family of Acid-sensing Ion Channels from the Zebrafish WIDESPREAD EXPRESSION IN THE CENTRAL NERVOUS SYSTEM SUGGESTS A CONSERVED ROLE IN NEURONAL COMMUNICATION* Received for publication, February 10, 2004 Published, JBC Papers in Press, February 16, 2004, DOI 10.1074/jbc.M401477200 Martin Paukert‡, Samuel Sidi§¶, Claire Russell储, Maria Siba‡, Stephen W. Wilson储**, Teresa Nicolson§‡‡, and Stefan Gründer‡§§ From the ‡Department of Physiology II and §Max-Planck-Institute of Developmental Biology, 72076 Tübingen, Germany, and 储Department of Anatomy and Developmental Biology, University College London, London WC1E 6BT, United Kingdom Acid-sensing ion channels (ASICs) are excitatory receptors for extracellular Hⴙ. Proposed functions include synaptic transmission, peripheral perception of pain, and mechanosensation. Despite the physiological importance of these functions, the precise role of ASICs has not yet been established. In order to increase our understanding of the physiological role and basic structure-function relationships of ASICs, we report here the cloning of six new ASICs from the zebrafish (zASICs). zASICs possess the basic functional properties of mammalian ASICs: activation by extracellular Hⴙ, Naⴙ selectivity, and block by micromolar concentrations of amiloride. The zasic genes are broadly expressed in the central nervous system, whereas expression in the peripheral nervous system is scarce. This pattern suggests a predominant role for zASICs in neuronal communication. Our results suggest a conserved function for receptors of extracellular Hⴙ in the central nervous system of vertebrates. Acid-sensing ion channels (ASICs)1 are Na⫹ channels that are activated by extracellular H⫹ (1). In the central nervous system, H⫹ is co-released with other transmitters, since synaptic vesicles are acidic (pH 5.7) (2). Thus, ASICs may act as excitatory receptors. During inflammation, the extracellular H⫹ concentration can also significantly increase. ASICs may therefore contribute to the perception of painful stimuli in the peripheral nervous system. In addition to the activation by H⫹, the homology of ASICs to mechanosensitive ion channels in Caenorhabditis elegans and the analysis of knock-out mice for * This work was supported by grants from the Deutsche Forschungsgemeinschaft (to T. N. and S. G.) and the Wellcome Trust and European Community (to S. W. W.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked “advertisement” in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EBI Data Bank with accession number(s) AJ609615–AJ609620. ¶ Present address: Ecole Normale Supérieure, Laboratoire de Biologie Moléculaire du Developpement, 46 rue d’Ulm, 75005 Paris, France. ** A Wellcome Trust Senior Research Fellow. ‡‡ Present address: Oregon Hearing Research Center and Vollum Institute, Oregon Health and Science University, Portland, OR 97201. §§ To whom correspondence should be addressed: Dept. of Physiology II, Gmelinstr. 5, D-72076 Tübingen, Germany. Tel.: 49-7071-29-77357; Fax: 49-7071-29-5074; E-mail: stefan.gruender@uni-tuebingen.de. 1 The abbreviations used are: ASIC, acid-sensing ion channel; zASIC, zebrafish ASIC; MES, 2-(N-morpholino)ethanesulfonic acid; RACE, rapid amplification of cDNA ends; HA, hemagglutinin; VSV, vesicular stomatitis virus glycoprotein; hpf, hours postfertilization. This paper is available on line at http://www.jbc.org individual ASIC subunits have suggested that ASICs are components of mechanically activated ion channels (3). There are four genes coding for ASICs in the human and mouse genome (asic1–asic4) (1, 4, 5). Moreover, alternative splicing of the asic1 and asic2 genes generates the splice variants ASIC1a/ASIC1b and ASIC2a/ASIC2b, respectively, that differ in the N-terminal third of the protein (6, 7). In rodents, ASICs show a broad expression pattern in the central and peripheral nervous system. All ASICs except ASIC4 are expressed in sensory neurons of the dorsal root and trigeminal ganglia. ASIC1a, -2a, -2b, and -4 are expressed in the central nervous system (1, 4, 5). ASICs activate rapidly upon H⫹ application (act of about 10 ms for ASIC1) (6) and desensitize in the continuous presence of H⫹. ASIC1 and ASIC3 desensitize completely (inact of about 1 s for ASIC1) (6), whereas ASIC2a desensitizes incompletely and more slowly (7). ASIC2b and ASIC4 cannot be activated by H⫹ (4, 5, 7). However, functional ASICs are probably tetrameric proteins, and ASIC2b forms a heteromeric channel with ASIC3 (7). Several other combinations of subunits form heteromeric ASICs (8, 9), increasing the variety of H⫹-gated Na⫹ channels in situ (10, 11). Despite the progress made in recent years, we are far from a clear understanding of the physiological role of ASICs. The zebrafish, Danio rerio, is a model organism for the study of vertebrate biology that offers some advantages over higher vertebrates. It has a translucent embryo and develops rapidly, allowing easy expression analysis of genes and detection of developmental abnormalities in mutant fish. In order to establish the zebrafish as a model to study the physiological role of ASICs, we report here the molecular cloning of cDNAs for six ASICs, their expression pattern during early zebrafish development, and their electrophysiological characterization in a heterologous expression system. Our results suggest a conserved function for receptors of extracellular H⫹ in the central nervous system of vertebrates. EXPERIMENTAL PROCEDURES Cloning of ASIC cDNAs from Zebrafish—Partial cDNA clones for zASIC1.2, -1.3, and -4.1 were identified by homology cloning from embryonic zebrafish brain and eye. Degenerate oligonucleotides and conditions for PCR were as described elsewhere (4). Partial sequences for zASIC1.1, -2, and -4.2 were identified by searching the online zebrafish genomic sequence trace data base (ENSEMBL) at the Sanger institute using the SSAHA program. Different rat ASIC subunits were used as a probe. These partial sequences were used to design primers for rapid amplification of 5⬘- and 3⬘-cDNA ends (RACE). Using the Smart RACE cDNA amplification kit (Clontech), RACE was performed with poly(A)⫹ RNA from different embryonic and adult zebrafish tissues. PCR products were subcloned with the TOPO-TA cloning kit (Invitrogen) and sequenced. Full-length zASICs were assembled from the longest 5⬘ and 3⬘ RACE products. cDNA sequences were deposited 18783 18784 ASICs from the Zebrafish FIG. 1. Sequence alignment of zASICs with rat ASIC1a, -2a, -3, and -4. Amino acids showing a high degree of identity are shown as white letters on a black background. The initiator methionine of each cDNA was assigned to the first ATG in frame. Transmembrane domains are indicated by bars, conserved cysteines by stars, and a conserved consensus site for N-linked glycosylation in the loop between transmembrane domains by a branched symbol. Accession numbers are as follows: U94403, ASIC1; U53211, ASIC2; AF013598, ASIC3; AJ271642, ASIC4. in the EMBL data base under the following accession numbers: zASIC1.1, AJ609615; zASIC1.2, AJ609616; zASIC1.3, AJ609617; zASIC2, AJ609618; zASIC4.1, AJ609619; zASIC4.2, AJ609620. For expression studies in Xenopus oocytes, the entire coding sequences of zASICs were amplified from cDNA of larval brain by PCR (ExpandHighFidelity PCR system; Roche Applied Science). Using terminal restriction endonuclease recognition sequences (BamHI and KpnI; zASIC1.1: XhoI and KpnI), the PCR product was ligated in the oocyte expression vector pRSSP containing the 5⬘-untranslated region from Xenopus  globin and a poly(A) tail. Several clones from two independent PCRs were sequenced to exclude PCR errors. Radiation Hybrid Mapping and Synteny Analyses—PCR primers designed to amplify single exons from zasic genes were used to screen pools of zebrafish/hamster radiation hybrid cell lines (Goodfellow radiation hybrid panel) (12). Two independent sets of primers were used per gene (primer sequences available upon request). The resulting 94-digit radiation hybrid scores were used to establish physical map positions using the Instant Mapping program at the Children’s Hospital Zebrafish Genome Project Initiatives Web site (zfrhmaps.tch.harvard.edu/ ZonRHmapper/instantMapping.htm). The same program was used to calculate Lod scores. Microsatellite markers (Zmarkers) and expressed sequence tags that flanked each locus were used to establish the putative genetic map positions of the different loci on the integrated genetic/ physical Tübingen map (wwwmap.tuebingen.mpg.de/). zasic-containing regions were then screened for the presence of expressed sequence tags that had been used to establish the syntenic correspondence of the zebrafish and human genomes (13) (zebrafish-human syntenic correspondence map available on the World Wide Web at zfish.wustl.edu/). Such expressed sequence tags that turned out to be informative were fb82d01 (zasic1.1), fb36e06 and bact2 (zasic2), and fc17a11 (zasic4.1). In Situ Hybridization—PCR products comprising 360 –520 bp from the N-terminal part of zASIC1.1 to zASIC4.2 cDNAs were subcloned in the TA cloning vector pCRII-TOPO (Invitrogen). Clones were sequenced to determine orientations relative to T3 and T7 sites and were used as ASICs from the Zebrafish 18785 TABLE I Integrated physical and genetic map positions of zasic loci Gene LGa Nearest marker zasic1.1 zasic1.2 zasic1.3 zasic2 zasic4.1 zasic4.2 22 8 24 3 9 6 Wz12404.1 Zkp113g7ya unp265 Wz12338.1 bz31c2 fj66a04 Distance LODb score Minimal genetic interval (p-d)c Genetic Position (from top of LG) 10.78 5.81 Maximum 15.86 16.54 11.62 Z11379-Z6507 Z7819-Z4323 Z9603-Z6438 Z9664-Z11227 Z7319-Z25375 Z17248-Z12094 ⬃15 ⬃33 ⬃56 ⬃68.5 ⬃43 39.5–49 cRe 11 43 0g 7 7 24 Human chromosomed Synteny 12q12 12q12 12q12 17q11.2–12 2q35–36 2q35–36 Yes No No Yes Yes ? cMf a Linkage group. Logarithm of the odds. Proximal to distal. d The physical position of human orthologs; the syntenic region for zasic4.2 was equivocal. e Centirays. f Centimorgans. g Considered as duplicate markers by InstantMapper. b c FIG. 2. Evolutionary relationship of zASIC subunits and other family members. Other family members are ASICs and intestinal Na⫹ channels (INaCs) from human (h) and rat (r); ripped pocket (RPK) and pickpocket (PPK) from Drosophila; DEG-1, MEC-4, MEC-10, and UNC-8, degenerins from Caenorhabditis; subunits of the epithelial Na⫹ channel (ENaC) from rat; and the FMRFamid receptor (FaNaCh) from the snail Helix aspersa. Highly divergent sequences at the N and C termini as well as in the proximal part of the extracellular loop had been deleted, and the alignment and the tree for the phylogram have been established by Neighbor-Joining with ClustalX. The tree was then imported into TreeView and rooted with FMRFamid receptor as an outgroup. Maximum likelihood analysis using TreePuzzle gave similar results. templates for 50-l PCRs (Advantage II PCR system; Clontech) using universal M13 forward and reverse primers. PCR products were precipitated and used as templates (⬃1 g/l) for in vitro transcription of digoxygenin-labeled (Roche Applied Science) sense and antisense riboprobes. Probes were used for whole mount in situ hybridization as described previously (14). To obtain efficient labeling of internal tissues, hybridizations of larvae ⱖ3 days postfertilization were carried out using albino larvae that were treated 18 (3-day postfertilization larvae) to 22 min (4-day postfertilization larvae) in 10 g/ml proteinase K. Electrophysiology—Using the mMessage mMachine kit (Ambion, Austin, TX), capped cRNA was synthesized by SP6 RNA polymerase from linearized cDNA. We injected 0.2–10 ng of cRNAs; currents ranged from 0.5 to 50 A. cRNA was injected into stage V or VI oocytes of Xenopus laevis, and oocytes were kept in OR-2 medium (82.5 mM NaCl, 2.5 mM KCl, 1.0 mM Na2HPO4, 5.0 mM HEPES, 1.0 mM MgCl2, 1.0 mM CaCl2, and 0.5 g/liter polyvinylpyrrolidone) for 1–7 days. Whole cell currents were recorded with a TurboTec 03⫻ amplifier (NPI Electronic, Tamm, Germany) using an automated, pump-driven solution exchange system together with the oocyte testing carousel controlled by the interface OTC-20 (NPI Electronic). Data acquisition and solution exchange were managed using the software CellWorks version 5.1.1 (NPI Electronic). Data were filtered at 20 Hz and acquired at 1 kHz. The bath solution for two-electrode voltage clamp contained 140 mM NaCl, 1.8 mM CaCl2, 1.0 mM MgCl2, 10 mM HEPES. For the acidic test solutions, HEPES was replaced by MES buffer. If not otherwise indicated, acidic application solutions were applied for 3.5 s, and neutral bath solution (pH 7.4) was applied for 30 s between channel activation. Holding potential was ⫺60 mV. For patch clamp experiments, bath solution contained 140 mM NaCl, 1.8 mM CaCl2, 1.0 mM MgCl2, 10 mM HEPES, pH 7.4. Acidic test solutions were buffered with MES. Patch pipettes contained 140 mM KCl, 2.0 mM MgCl2, 5.0 mM EGTA, and 10 mM HEPES, pH 7.4. Rapid pH changes in the outside-out configuration were achieved by placing the patch in front of a piezo-driven double-barreled application pipette. Time constant for complete solution exchange is ⬍2 ms (6). Holding potential was ⫺70 mV. Currents were filtered at 5 kHz and acquired at 50 kHz. Data were analyzed using IgorPro software (WaveMetrics, Lake Oswego, OR). Dose-response curves were fitted to a Hill equation, and I-V curves were fitted to a polynomal function. Time constants of desensitization were determined by fitting current traces obtained in outsideout patch clamp experiments to a monoexponential function. The current rise time was evaluated by determining the rise time from 20 to 80% of the peak current (time to peak). All values reported represent the mean ⫾ S.E. from n individual measurements, if not otherwise indicated. Statistical analysis was done with Student’s t test. Immunoprecipitation and Western Blot—zASIC1.2 was epitopetagged by inserting into the cDNA an oligonucleotide encoding the hemagglutinin (HA) epitope (YPYDVPDYA) of influenza virus. zASIC1.3 was epitope-tagged by inserting an oligonucleotide encoding the vesicular stomatitis virus glycoprotein (VSV-G) epitope (YTDIEMNRLGK). Both epitopes were inserted at the C termini of the respective proteins. To have equal signal intensities in Western blots, half the amount of cRNA for zASIC1.3 compared with zASIC1.2 was injected in Xenopus oocytes. Microsomal membranes of oocytes injected with the tagged proteins were prepared 2 days after injection as described (15). Proteins from part of the microsomal membranes (equal to two oocytes) were directly separated on a 9% polyacrylamide-SDS gel and transferred to a polyvinylidene difluoride membrane (PolyScreen; PerkinElmer Life Sciences). The polyvinylidene difluoride membrane was then incubated with either peroxidase-coupled anti-HA antibody (1:1000; Roche Applied Science) or anti-VSV-G antibody (1 g/ml; Roche Applied Science) followed by peroxidase-coupled anti-mouse antibody (1:500; Santa Cruz Biotechnology, Inc., Santa Cruz, CA) (Lysate in Fig. 7). Bound antibodies were visualized using the ECL kit (Amersham Biosciences). The remaining part of the microsomal membranes (equal to 16 oocytes) was resuspended in immunoprecipitation buffer (20 mM Tris, pH 7.6, 100 mM NaCl, 2% bovine serum albumin, 0.5% digitonin, 2 mM phenylmethylsulfonyl fluoride, leupeptin, antipain, and pepstatin 18786 ASICs from the Zebrafish A) and incubated with an anti-VSV-G antibody coupled to agarose (1:10; Sigma) for 1 h at 4 °C. The immunoprecipitates were washed several times and then separated on a gel and subjected to Western blot using the peroxidase-coupled anti-HA antibody as described above. RESULTS Molecular Characterization of ASICs from the Zebrafish— We isolated six full-length cDNA clones coding for proteins with strong homology to ASICs from the zebrafish. The open reading frames of the respective cDNA clones code for proteins consisting of 501–558 amino acids with similar predicted molecular masses of ⬃60 kDa. The predicted amino acid sequences for all six zebrafish clones are shown together with the sequence of rat ASICs in Fig. 1. The degree of amino acid identity between the zebrafish and rat ASICs ranges from 60 to 75%. All six ASICs from zebrafish are encoded by different genes (Table I). Since only four asic genes are present in the genome of mouse and humans, the zebrafish has a greater variety of ASICs, which may be compensated by, at least in part, alternative splicing of the asic1 and -2 genes in mammals. Phylogenetic analysis (Fig. 2) predicts that three of the zebrafish ASICs are orthologs of ASIC1, ASIC2, and ASIC4, respectively. We named these clones zASIC1.1, zASIC2, and zASIC4.1, respectively. Two other clones, zASIC1.2 and zASIC1.3, are paralogs of zASIC1.1, and one other clone, zASIC4.2, is a paralog of zASIC4.1. We did not identify an ortholog of ASIC3. However, there are genomic sequence data for additional zebrafish ASICs in the data base. Further studies will show if these genes are transcribed into mRNA coding for functional ASICs or if these genes are inactive pseudogenes. All six zASICs show the hallmarks of the degenerin/epithelial Na⫹ channel gene family: two hydrophobic domains, rather short N and C termini, and a large loop containing conserved cysteines between the two hydrophobic domains. There is one consensus site for N-linked glycosylation that is predicted to have an extracellular location and that is conserved in all zASICs (Fig. 1). Homology between different ASICs is particularly high in the second transmembrane domain and the region preceding this domain (Fig. 1). The C-terminal motif ((E/D)(F/ I)(A/T)C) of rat ASIC1 and -2 that mediates the interaction of these ASICs with the PDZ domain-containing protein PICK1 (16, 17) is conserved in rat ASIC4 and in zASIC1.1, -2, -4.1, and -4.2 but not in zASIC1.2 and -1.3 (Fig. 1). Expression Pattern of asic Genes in Zebrafish Embryos and Larvae—The expression pattern of the six zasic genes in different zebrafish tissues was analyzed by in situ hybridization at 24, 30, 48, 72, and 96 h postfertilization (hpf). Expression of the asic genes was restricted mainly to neurons and maybe some glial cells. In general, each zasic showed spatially localized expression in specific neuronal tissues up until 48 hpf (Fig. 3) and then more widespread expression throughout the central nervous system from 72 hpf. Although overlapping in several cases, the expression patterns of zasic genes were distinguishable, indicating that each pattern was unique. Hybridization of sense strand cRNAs, which was performed as controls, did not give hybridization signals above background. zasic1.1 was first expressed by 30 hpf when its expression was restricted to the anterior and posterior lateral line ganglia and the otic sensory neurons (aLL, pLL, and OSN in Fig. 4, A and B). At 48 hpf, expression also became evident in the trigeminal ganglia (Tg in Fig. 3, A and B). At 72 and 96 hpf, expression could be seen throughout most of the central nervous system except for the eyes (Fig. 4K). It was excluded from the dorsal forebrain except for the habenula nuclei. Like asic1.3 (see below), asic1.1 expression was stronger in the left habenula in comparison with the right habenula (Fig. 4K). Expression of zasic1.2 was first evident at 48 hpf, at which FIG. 3. zasic genes are widely expressed in the developing central nervous system. Lateral (A, C, E, G, I, and K) and ventral (B, D, F, H, J, and L) views of whole brains of embryos at 48 hpf show the distribution of various ASIC mRNAs (blue labeling). Black and red dashes indicate the positions of the anterior commissure and optic chiasm and tracts, respectively. a, anterior; d, dorsal; Hb, hindbrain; h, hypothalamus; LL, lateral line; Mb, midbrain; OB, olfactory bulb; OSN, otic sensory neurons; p, posterior; PG, pituitary gland; POA, preoptic area; RGC, retinal ganglion cells; T, telencephalon; Tg, trigeminal; Th, thalamus; v, ventral; ⽧, ventral midbrain. stage weak expression could be observed in the ventral thalamus, ventral midbrain, ventral cerebellum, and ventral hindbrain and in the dorsal thalamus and hypothalamus (Fig. 3, C and D). There was also expression in the telencephalon, along the tract of the anterior commissure (black dashes in Fig. 3, C and D). zasic1.2 was additionally weakly expressed in the dorsal midbrain (dMb) and olfactory bulb (OB) at 48 hpf (Fig. 3, C and D). The level of staining increased by 96 hpf (Fig. 4, C and D) when zasic1.2 was also expressed in the tectum (Te in Fig. 4C). Unlike zasic1.1 and -1.3, zasic1.2 was not expressed asymmetrically in the habenulae at 96 h. zasic1.2 was the only zasic to be faintly expressed in the trunk of the fish (Fig. 4L, 96 hpf). Presumably, these cell bodies represent dorsal root ganglia. However, labeling was so faint that we could not unequivocally attribute it to a certain cell or tissue type. zasic1.3 was first expressed at 30 hpf in the anterior and posterior lateral line ganglia (aLL and pLL in Fig. 4, E and F), where it persisted until at least 48 hpf (Fig. 3, E and F). It was also expressed between 30 and 72 hpf in the telencephalon, ASICs from the Zebrafish 18787 FIG. 4. Localized expression of zasic genes in specific central nervous system neurons and cranial ganglia. Shown are lateral (A, C, E, and I), ventral (B, D, G, H, and J), and dorsal (F, K, and L) views of ASIC mRNA expression (blue) in brains of embryos at the various stages indicated. The solid line in K represents the midline. Black and red dashes indicate the position of the anterior commisure and of the tract of the postoptic commisure, respectively. AC, anterior commissure; aLL, anterior lateral line; Cb, cerebellum; dT, dorsal telencephalon; OB, olfactory bulb; OSN, otic sensory neurons; pLL, posterior lateral line; RGC, retinal ganglion cells; Te, tectum; Tg, trigeminal; TPOC, tract of the postoptic commissure. along the tract of the anterior commissure (black dashes in Fig. 3E and data not shown). There was expression in the ventral thalamus, ventral midbrain, ventral cerebellum, and ventral hindbrain from 30 hpf. By 48 hpf, expression was also evident in the dorsal thalamus and hypothalamus (Fig. 3, E and F). At 72 hpf, weak expression was apparent in the habenulae, but by 96 hpf expression was stronger in the left habenula (LH) compared with the right habenula (RH) (not shown). This lateralized expression of zasic1.3 in the habenula has previously been published under the name habenular expressed sequence tag 1 (hest1) (18). zasic2 expression was first detected at 30 hpf along the tract of the anterior commissure, where it persisted until 48 hpf (data not shown and dashed line in Fig. 3, G and H). At 48 hpf, zasic2 was also expressed in the preoptic area, ventral thalamus, and ventral midbrain and weakly in the ventral hindbrain (Fig. 3, G and H). At 72 and 96 hpf, expression was seen throughout most of the brain except for the dorsal forebrain. It was also expressed in the retinal ganglion cells (RGC in Fig. 4G). Expression of zasic4.1 was first evident at 48 hpf, at which stage the expression pattern was very similar to but stronger than that of zasic1.2. Of note, zasic4.1 (Fig. 3, I and J) was expressed in an extra domain in the dorsal midbrain (dMb) and in the retinal ganglion cells (data not shown). zasic4.2 was the earliest zasic to be expressed, being evident along the tract of the anterior commissure between 24 and 30 hpf (black dashes in Fig. 4, I and J, and data not shown). At 30 hpf, cells along the tract of the postoptic commissure also expressed zasic4.2 (red dashes in Fig. 4, I and J). At 48 hpf, very localized expression was evident in the preoptic area (POA in Fig. 3, K and L), which was maintained until at least 96 hpf. The posterior hypothalamus, ventral midbrain, hindbrain (Fig. 3, K and L), and retinal ganglion cells (Fig. 4H) all expressed zasic4.2 by 48 hpf. These domains of expression persisted and strengthened in older embryos. Notably, zasic4.2 was the only zasic almost devoid of expression in the telencephalon at 96 hpf (not shown). Functional Properties of zASICs—The functional properties of zASICs were investigated in X. laevis oocytes using the two-electrode voltage clamp technique. Oocytes expressing zASIC1.1, -1.2, -1.3, or -4.1 showed rapidly desensitizing inward currents when acidic solutions were applied, whereas zASIC2 and zASIC4.2 could not be activated by acidic test solutions. All zASIC currents had a similar overall shape (Fig. 5A). They rapidly activated and desensitized completely within less than 1 s. Occasionally, a small transient current increase appeared during desensitization of the channels that was highly variable among oocytes. Prolonged activation of zASIC4.1 led to the appearance of a sustained current component following the transient component (Fig. 5A, inset). This behavior is similar to rat ASIC3 (19). In this study, we analyzed only the transient current component of zASIC4.1 in detail. Recovery from desensitization of zASICs was complete within less than 30 s in pH 7.4 (not shown). The pH at which halfmaximal activation of zASICs was reached varied between pH 5.0 and 6.6 (Fig. 5 and Table II). This corresponds to an almost 100-fold difference in agonist concentration. However, these large differences in agonist affinity are comparable with the mammalian ASICs, for which pH of half-maximal activation varies between pH 4.3 (ASIC2a) (20) and 6.7 (ASIC3) (21). Since zASIC currents showed fast kinetics, we analyzed the kinetics of channel activation in outside-out patch clamp recordings using fast solution exchange. To compare the kinetics between different zASICs, all channels were activated with a saturating H⫹ concentration (pH 4.0). The fast gating of zASICs is illustrated by a representative recording of a zASIC1.2 current in Fig. 6A. As is shown in Table II, the mean time constant of desensitization ranged from 9.5 ms (zASIC1.1) to 49.5 ms (zASIC1.2). Previously, using outside-out patches, a time constant of desensitization of 1150 ms was measured for rat ASIC1 (6), and a time constant of 320 ms was measured for rat ASIC3 in COS-7 cells (21). These values cannot be directly compared with the values determined in the present study, because the previous studies used pH 6.0 to activate channels. However, the kinetics of zASIC1.2 were not significantly slower when it was activated with pH 5.7 (not shown), and a fast desensitization was also consistently observed in the whole cell measurements. Thus, zASICs desensitize much faster than rat ASICs. Due to the low current amplitude of zASIC4.1, we did 18788 ASICs from the Zebrafish FIG. 5. Hⴙ sensitivity of zASICs. A, representative current traces of zASIC expressing oocytes elicited by varying acidic pH. Acidic application solution was applied for 3.5 s, and neutral bath solution (pH 7.4) was applied for 20 s (zASIC4.1) or 30 s (zASIC1.1, -1.2, and -1.3) between activation. Inset, representative current trace of prolonged activation of zASIC4.1. B, pH-response relationship. Symbols and error bars represent mean ⫾ S.E. Peak current amplitudes at the most acidic pH were ⫺24.15 ⫾ 5.57 A for zASIC1.1 (n ⫽ 9), ⫺8.69 ⫾ 1.05 A for zASIC1.2 (n ⫽ 14), ⫺22.86 ⫾ 3.58 A for zASIC1.3 (n ⫽ 18), and ⫺4.32 ⫾ 0.46 A for zASIC4.1 (n ⫽ 13). not analyze this channel in outside-out patch clamp recordings. However, in whole oocytes, zASIC4.1 channels showed fast kinetics like the other zASICs, desensitizing completely within less than 200 ms. A hallmark of mammalian ASICs is their Na⫹ selectivity and their sensitivity to the antagonist amiloride. We determined the reversal potential of the zASIC currents in whole oocytes by repetitive activation with pH 4.0 at different membrane potentials (Fig. 6B). Reversal potentials for zASICs varied between 54 and 61 mV (Table II), revealing a Na⫹-selective ion pore. Furthermore, all functional zASICs could be blocked by amiloride in a dose-dependent manner (Fig. 6C). Their sensitivity was in the low micromolar range (Table II), similar to other ASICs. For zASIC4.1, the sustained component was not affected by 1 mM amiloride (not shown). Thus, as expected from the high conservation within the second transmembrane domain (Fig. 1), which is supposed to form the ion pore (22), zASICs share basic pore properties with mammalian ASICs. zASICs Can Form Heteromeric Channels with Unique Functional Properties—Another property of ASICs is that they readily form heteromeric ion channels. To analyze whether zASICs can form heteromeric channels, we co-expressed zASIC1.2 and -1.3 in Xenopus oocytes. We choose zASIC1.2 and 1.3 as an example, since they showed a broad overlap in expression in the nervous system of zebrafish (Fig. 3). As illustrated in Fig. 7A, oocytes expressing zASIC1.2 and zASIC1.3 together showed a larger ASIC current amplitude than oocytes expressing either subunit alone. This increase in the expression efficiency is best appreciated when comparing averaged current traces in Fig. 7A. Since this increase in current amplitude was larger than expected by the addition of the current amplitude for zASIC1.2 and -1.3 alone, it indicated the formation of a heteromeric channel. Moreover, oocytes expressing both zASIC1.2 and -1.3 together showed an ASIC current with a H⫹ sensitivity that did not correspond to either of the homomeric channels (Fig. 7B and Table II) and that could be well fitted assuming a single H⫹ binding site (Fig. 7B). For two co-existing, separate populations of homomeric channels, however, one would have expected a biphasic dose-response relationship, which should be well fitted only assuming a twobinding site model. And finally, co-expressing zASIC1.2 and -1.3 led to a current with unique kinetics (Fig. 7A and Table II). In whole oocyte measurements (Fig. 7A) as well as in outsideout patches (Table II), zASIC1.2/1.3 desensitized slower than zASIC1.2 (p ⬍⬍ 0.01 for whole oocytes, p ⫽ 0.06 for patches) and zASIC1.3 (p ⬍ 0.05 for whole oocytes, p ⫽ 0.09 for patches). Thus, there was 3-fold evidence for the formation of a heteromeric channel with new electrophysiological properties. In addition, we could directly demonstrate the association between zASIC1.2 and -1.3 by co-immunoprecipitation. zASIC1.2 and -1.3 were tagged with short epitopes introduced at their C termini (zASIC1.2-HA and zASIC1.3-VSV-G), and the tagged proteins were injected in Xenopus oocytes either alone or in combination. The detergent-solubilized microsomal membranes were then immunoprecipitated using an antibody directed against the VSV-G epitope, and the immunoprecipitated fractions were analyzed by Western blot using the HA epitope. This revealed specific co-immunoprecipitation of zASIC1.2 by zASIC1.3 (Fig. 7C). This heteromultimeric association occurred in the intact cell, since zASIC1.2 could not be co-immunoprecipitated by zASIC1.3 when microsomes from cells expressing either zASIC1.2 or zASIC1.3 alone were mixed in vitro (Fig. 7C). DISCUSSION Similar to mammalian asic genes, the majority of zasic genes were broadly expressed in the central nervous system, suggest- ASICs from the Zebrafish 18789 TABLE II Functional properties of zASICs Data are mean ⫾ S.E. for the number n of individual oocytes or individual patches indicated in parentheses. pH values at which channels were half-maximally activated (pH50) were obtained from measurements as shown in Fig. 5A. The speed of channel activation, evaluated as time to peak (TTP; the current rise from 20 to 80% of the peak), and time constants of desensitization (des) were obtained from outside-out patch-clamp recordings with fast solution exchange. Reversal potential (Vrev) and concentration of half-maximal block by amiloride (IC50, Amil) were obtained from measurements as shown in Fig. 6, B and C, respectively. ND, not determined. pH50 TTP/ms des/ms Vrev/mV IC50, Amil/M zASIC 1.1 zASIC 1.2 zASIC 1.3 zASIC 4.1 zASIC1.2/1.3 6.19 ⫾ 0.03 (9) 2.72 ⫾ 1.31 (4) 9.5 ⫾ 1.2 (4) 61.2 ⫾ 1.3 (14) 57.8 ⫾ 12.3 (15) 4.99 ⫾ 0.05 (14) 4.85 ⫾ 1.56 (10) 49.5 ⫾ 6.3 (10) 53.6 ⫾ 1.5 (12) 21.7 ⫾ 3.0 (12) 6.62 ⫾ 0.02 (18) 3.76 ⫾ 1.28 (5) 22.5 ⫾ 8.0 (5) 55.5 ⫾ 2.6 (12) 22.9 ⫾ 2.6 (13) 5.71 ⫾ 0.04 (13) ND ND 55.7 ⫾ 3.1 (9) 23.2 ⫾ 2.9 (10) 6.24 ⫾ 0.02 (14) 2.6 ⫾ 1.37 (6) 90.1 ⫾ 27.5 (6) 48.5 ⫾ 1.4 (12) 20.5 ⫾ 2.4 (20) ing that they are involved in neuronal communication. In rodents, ASIC1 is enriched at postsynaptic sites (23), consistent with the involvement in synaptic transmission. Moreover, knock-out of the asic1 gene leads to viable mice that show reduced excitatory postsynaptic potentials and N-methyl-D-aspartate receptor activation during high frequency stimulation (23). These data suggest a role for ASIC1 in synaptic plasticity. However, another study found an even distribution of ASIC1 immunreactivity along the soma and along the branches of axons and dendrites (24), suggesting a more general, and largely unknown, role in neuronal communication. Further studies are necessary to reveal the subcellular location of ASICs in the central nervous system of the zebrafish. In mice, using Western blot analysis, it was shown that ASIC1 is expressed early on (at embryonic day 12) in the central nervous system. Later in development, the abundance of ASIC1 remains steady (24). Similarly, mRNA for ASIC1a is detectable in mouse brain at embryonic day 11, and mRNA for ASIC2a is present at embryonic day 7 (25). Consistent with a role in early development, all zebrafish asic genes were expressed between 24 and 48 hpf, suggesting a function in the immature, developing nervous system. Interestingly, several zasic genes (zasic1.2, -1.3, -2, -4.1, and -4.2) were expressed in cells adjacent to axonal tracts. Thus, zASICs may play a role in establishing axonal tracts or in axon guidance or may stabilize axonal pathways and connections. Because mammalian ASICs are abundantly expressed in sensory neurons of the dorsal root and trigeminal ganglia and have been proposed as receptors for different sensory stimuli, we expected expression of asic genes in sensory neurons of the zebrafish. However, in sharp contrast to asic genes from mammals, asic genes were only scarcely expressed in sensory neurons in the zebrafish. asic1.1 was the only asic gene to be expressed in the trigeminal ganglion during embryonic development (Fig. 3); none of the other asic genes were expressed in primary sensory neurons at sufficient abundance to be detected by our in situ hybridization. Moreover, we did not detect expression of any zasic in Rohon-Beard cells, the primary sensory cells located in the spinal cord of embryos of lower vertebrates (26, 27). The lack of staining of primary sensory neurons may be due to the low abundance of zASIC mRNA in these cells that escaped detection in our whole mount in situ hybridizations. However, since other ganglia showed specific staining for zASIC mRNA (for example, the lateral line ganglia for zASIC1.1 and zASIC1.3), we think this is an unlikely possibility. The trigeminal ganglion contains neurons carrying somatosensory information from the head. Receptor types of higher vertebrates include cutaneous touch receptors, chemoreceptors, and nociceptors. The presence of these principal receptor types has recently been demonstrated in trigeminal ganglia of fish (28). In particular, it has been shown that nociceptors innervate the head (29) and that acid injection elicits a behavior consistent with the perception of pain in fish (29). Thus, as with mammalian ASIC1 (30, 31), zASIC1.1 may be expressed in nociceptors and act as a receptor for painful stimuli. In mice, knock-out of the asic2 gene leads to animals with a decreased sensitivity for tactile stimuli of rapidly adapting mechanoreceptors (32). In contrast, mice with a knock-out of the asic3 gene are characterized by an increased sensitivity of rapidly adapting mechanoreceptors and a decreased sensitivity of A fiber mechanonociceptors (33). This suggests a role for ASIC2 and -3 in the perception of tactile stimuli. We restricted our expression analysis to the embryonic and larval stages of the zebrafish up to 96 hpf when whole mount in situ hybridizations are feasible. Therefore, we cannot exclude a broader expression of zASICs in sensory ganglia of adult fish. However, Rohon-Beard cells, which are functional in embryos, are mechanosensitive and respond to light touch to the skin (34, 35). Accordingly, zebrafish embryos respond to touch after 27 hpf (36, 37). At this stage, we did not observe asic expression in sensory neurons (Fig. 4). If one assumes a similar molecular make-up of mechanically activated ion channels in early and adult stages, a contribution of ASICs to mechanically activated ion channels in zebrafish is unlikely. However, the expression pattern suggests that zASICs are involved in the processing of sensory stimuli. For example, zasic1.1 and zasic1.3 were expressed in the anterior and posterior lateral line ganglia. Neurons of the anterior lateral line ganglia innervate mechanoreceptive neuromasts of the head, and neurons of the posterior lateral line ganglia innervate trunk neuromasts. zasic1.1 was also expressed in the otic sensory neurons; due to the widespread expression of zasic1.3 in the hindbrain, we cannot rule out the possibility that zasic1.3 was also expressed in this location. The otic sensory neurons innervate the mechanosensitive hair cells of the inner ear, which are evolutionarily related to the hair cells of the lateral line neuromasts. Thus, zasic1.1 and zasic1.3 were expressed in neurons innervating sensory cells and may contribute to the processing of mechanical stimuli perceived by these cells. Interestingly, the mRNAs for all rat ASICs, except ASIC4, are expressed in the spiral ganglion that innervates the hair cells in the inner ear of rats,2 suggesting a conserved function in these two vertebrate species. In addition, three zasic genes (zasic2, -4.1, and -4.2) were expressed in the retinal ganglion cells, which receive input from the retinal photoreceptors. Like zasic4.1 and -4.2, rat ASIC4 is also expressed in a subset of retinal ganglion cells,3 suggesting again a conserved function. zasic1.2, -1.3, and -4.1 also had widespread midbrain and hindbrain expression that is likely to encompass nuclei that integrate sensory input. Considering the expression patterns in these various cell types, it is likely that zASICs contribute to the processing of diverse sensory stimuli. Besides altered responses of mechanoreceptors, mice with a knock-out of the 2 3 S. Gründer, unpublished results. T. Gründer and S. Gründer, unpublished results. 18790 ASICs from the Zebrafish FIG. 6. Kinetics, selectivity, and pharmacology of zASICs. A, representative current trace from an outside-out patch clamp recording. zASIC1.2 channels were activated by rapidly exchanging a solution of pH 7.4 with a solution of pH 4.7. Bottom, enlargement of the activation phase. B, current-voltage relationship for currents through zASIC1.1, -1.2, -1.3, and -4.1 elicited by pH 4.0 in whole oocytes. Symbols and error bars represent mean ⫾ S.E. Peak current amplitudes at ⫺60 mV were ⫺27.26 ⫾ 3.49 A for zASIC1.1 (n ⫽ 14), ⫺2.94 ⫾ 0.45 A for zASIC1.2 (n ⫽ 12), ⫺4.37 ⫾ 0.61 A for zASIC1.3 (n ⫽ 12), and ⫺1.38 ⫾ 0.29 A for zASIC4.1 (n ⫽ 9). C, dose-response relationship for block of zASIC1.1, -1.2, -1.3, and -1.4 currents by amiloride. The solutions containing varying concentrations of amiloride had a pH of 4.0. Symbols and error bars represent mean ⫾ S.E. Peak current amplitudes without amiloride were ⫺36.84 ⫾ 3.11 A for zASIC1.1 (n ⫽ 15), ⫺12.39 ⫾ 1.67 A for zASIC1.2 (n ⫽ 12), ⫺7.48 ⫾ 1.68 A for zASIC1.3 (n ⫽ 13), and ⫺1.04 ⫾ 0.15 A for zASIC4.1. asic3 gene show enhanced behavioral responses to high intensity painful stimuli, regardless of their sensory modality (38). This finding suggests a role for ASIC3 in the processing of FIG. 7. Formation of a heteromeric channel by zASIC1.2 and -1.3. A, current traces representing averaged data from 14 (zASIC1.2), 13 (zASIC1.3), and 12 (zASIC1.2/1.3) individual recordings in whole oocytes. The amount of cRNA that had been injected into each oocyte was 10 ng of zASIC1.2 alone, 5 ng of zASIC1.3 alone, or 2 ng of zASIC1.2 together with 0.2 ng of zASIC1.3. Note that despite the lower amount of cRNA injected for the co-expression experiment, current amplitude was larger. Note also the slow desensitization of the current from oocytes expressing both zASIC1.2 and -1.3 (time constants for desensitization of the averaged traces were 145 ms for zASIC1.2, 101 ms for zASIC1.3, and 563 ms for zASIC1.2/1.3). B, pH-response relationship for zASIC1.2/1.3 measured in whole oocytes. Data for zASIC1.2 and zASIC1.3 from Fig. 5B are shown for direct comparison. Symbols and error bars represent mean ⫾ S.E. Peak current amplitude for zASIC1.2/1.3 was ⫺33.35 ⫾ 3.06 A (n ⫽ 13) at pH 5.1. C, co-immunoprecipitation (co-IP) of zASIC1.2 and -1.3 from Xenopus oocytes. Proteins were immunoprecipitated (IP) using the anti-VSV antibody. The microsomes used for the co-IP were prepared from either (from left to right) uninjected oocytes, oocytes injected with zASIC1.2 alone, oocytes injected with zASIC1.3 alone, or oocytes injected with both zASIC1.2 and zASIC1.3 together. For the last lane on the right, microsomes from oocytes expressing either zASIC1.2 or zASIC1.3 were mixed in vitro just prior to the co-immunoprecipitation. The antibody used to detect proteins in the Western blot is indicated on the right. Western blots of the lysates are shown at the bottom and demonstrate the presence of the expected proteins. The molecular masses (kDa) of the size markers are indicated. ASICs from the Zebrafish sensory stimuli, such as a tonic inhibition of high intensity pain signals. Thus, ASICs appear to have a conserved role in the processing of sensory information in vertebrates. When analyzed in a heterologous expression system, four of the six zASICs were activated by extracellular H⫹ with properties similar to the mammalian ASICs. The main difference was the faster desensitization kinetics of zASICs compared with mammalian ASICs. A fast kinetics has been previously described for an ASIC from toadfish (39). In our study, two zASICs were not activated by low pH, zASIC2 and zASIC4.2. Like rat ASIC2, zASIC2 may form a heteromeric channel with new properties as we have, as an example, shown for zASIC1.2 and -1.3. It has been suggested that mammalian ASIC2 may be a central component of a mechanosensitive ion channel (32). As described above, the expression pattern in zebrafish embryos and larvae does not support such a function for zASIC2. A knock-out mouse for asic4 has not been reported thus far, and the function of ASIC4 is unknown. Since rat ASIC4 cannot be activated by H⫹, activation by H⫹ of zASIC4.1 was more surprising than the H⫹ insensitivity of zASIC4.2. Since zASIC4.1 is ⬃70% identical to zASIC4.2, a more detailed analysis of these two paralogs may help to identify structures important for the activation of ASICs by extracellular H⫹. In addition to H⫹ insensitivity, the restricted expression pattern of zASIC4.2 is reminiscent of the restricted expression pattern of mammalian ASIC4. The main site of zASIC4.2 expression was the preoptic area (Fig. 3, K and L), which is the most anterior part of the hypothalamus. The preoptic area receives different kinds of sensory information and participates in the homeostasis of physiological parameters such as blood pressure and composition. The main site of ASIC4 expression in humans as revealed by Northern blot (4) is the pituitary gland (PG in Fig. 3, K and L), which is in close proximity to the preoptic area. Given that tissues prepared for a Northern blot may always be contaminated by surrounding tissues, the possibility cannot be excluded that there is some overlap in expression and perhaps function of ASIC4.2 in zebrafish and ASIC4 in humans. In summary, we have demonstrated that a family of receptors for extracellular H⫹ is broadly expressed in the nervous system of the zebrafish. These receptors have differential properties, and the formation of heteromeric channels may increase the repertoire of H⫹ receptors. 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