B i o MedS i m
T h e me s
C on fe r en ce
Linköping
University, Sweden
• Bio-mechanics and artificial organs, study of
muscular motion.
BioMedSim 2005
• Knowledge based systems and knowledge
driven data processing for biological and
medical applications with emphasis on aids to
explicit diagnostic process and diagnosis rule
formation.
Modeling and
Simulation in Biology,
• Mathematical modeling in biology, medicine,
Medicine and
biophysics and biochemistry.
• Object Oriented modeling approaches for
Biomedical Engineering
biological systems.
• Mathematical modeling in immunology,
neurophysiology, population dynamics and
enzyme kinetics.
• Mathematical models and simulation studies
on cancer and screening infectious diseases.
• Mathematical models for drug
administration.
• Modeling and design of control and
assistance devices.
• Models, techniques, and simulation tools to
seek integrated understanding of living
organisms functions.
• Regulation of gene expression.
• Signal and image processing chains for
biological and medical applications with
emphasis on diagnosis.
Date: 26-27 May 2005
• Systems for educational purposes in subfields of biology and medicine with explicit
emphasis on mathematical models,
simulation and display tools.
Linköping, Sweden
• Virtual reality assisted surgery
Linköping University, Sweden
Invited
Speakers
David Hill
Computer Science and Modeling
Laboratory
Blaise Pascal University, France
Future Challenges for
Distributed Computing and
Biology : The Case of Grid
Computing and Stochastic
Distributed Simulation
2 6 M ay 2 0 0 5
09:30-10:00
09:15-10:00 Keynote Speech: David Hill
An Optimal System Designing and Simulation for Medical Nanorobots
SESSION I : Bio-mechanics and artificial organs, study of muscular motion, simulation studies on screening infectious diseases
10:15-10:45
Simulation of Muscle Force from Muscle-Belly Displacement Using Dynamical
Models
Ales Belic, Bostjan Simunic, Rihard Karba
10:45-11:15
Asymmetry Of Rhythmic Jejunal Wall Motion And Its Consequences For
Fluid Transport
Michel Bouchoucha, François Bertrand, François Rocaries
11:15-11:45
Simulating Influenza Outbreaks in Local Communities
The purpose of this keynote is to present the new challenges for
distributed stochastic simulation in biology. The first part will give
a short presentation dealing with the differences between : Grid
Computing, Internet Computing, Peer-To-Peer, Cluster Computing, Meta Computing and Parasitic computing. Then the focus
will be given to grid computing, which could be considered as
distributed computing taken to the next evolutionary stage. We
will see what grid computing can do, the concepts of grid
computing, the current European status of Grid computing and
what will be possible in the near future. We will also state
what a grid cannot do.
A second part will deal will the distribution of stochastic simulations and the distribution of simulation experiments (whether
stochastic or not). The different techniques in use to distribute
random numbers will be presented as well as future research
directions. Optimization techniques will be exposed and real
applications on biology ecological modelling and medical
projects will be presented to help understanding the impact
of grid computing.
Magnus Morin, Henrik Eriksson, Johan Jenvald,
Toomas Timpka
11:45-12:15
A Bond Graph Approach To Multi-Physics Lumped Modelling In The
Cardiovascular System
Jacques LeFèvre, Vanessa Diaz-Zuccarini, Peter Weller
13:15-14:15 Keynote Speech: Peter Vanrolleghem
SESSION II : Knowledge based systems and knowledge
driven data processing for biological and medical applications, ecological modeling and simulation
14:30-15:00
Evaluation and Comparison of Ecological Models Simulating Nitrogen
Processes in Treatment Wetlands, Modeled in Modelica
Stina Edelfeldt, Peter Fritzson
15:00-15:30
Noninvasive Automatic Sleep Apnea Classification System
Peter Vanrolleghem
Department of Applied
Mathematics, Biometrics and
Process Control
Ghent University, Belgium
Integration: a Key Word
and Challenge in Water
Quality Modeling
Tarik Al-Ani, Yskandar Hamam, Daniel Novak,
Paula Tamara Pozzo Mendoza, Lenka Lhotska
10:15-10:45
A Mathematical Model of the Synchronisation of NAD(P)H Oscillations between Tumour Cells and Neutrophils
Thomas Aarup Hansen, Jens Christian Brasen,
Lars Folke Olsen
10:45-11:15
From In Vitro Biochemistry to In Vivo Understanding of the Glycolytic Oscillations in Saccharomyces Cerevisiae
Gunnar Cedersund, Sune Dano, Preben Sorensen,
Mats Jirstrand
11:15-11:45
Biochemical and Metabolic Modeling with Modelica
Emma Larsdotter-Nilsson, Peter Fritzson
SESSION V : Mathematical modeling in biology,
medicine, biophysics and biochemistry
13:15-13:45
Modelling of Signal Transduction and Gene Expression Regulation in Immune System Cells
Evgeniya Nedosekina, Elena Ananko,
Vitaliy Likhoshvai, Dmitriy Oshchepkov,
Nikolay Kolchanov
13:45-14:15
Identification of a Nonlinear Cell Cycle System with Linear
Models
Martin Fransson, Markus Gerdin,
Peter Fritzson
14:15-14:45
Cell differentiation: The genetics of a Stickman
Niclas Wadströmer, Robert Forchheimer
15:30-16:00
Open Technical Platform Prototype and Validation Process Model
for Patient at Home Medical Monitoring System
Alain Lacombe, François Rocaries, Christophe
Dietrich, Jean Louis Baldinger, Jerome Boudy
16:00-16:30
Modeling for Simulation and Data Storage of Cellular Pathways:
Similarities and Differences
Lena Strömbäck, Patrick Lambrix
Water is a precious good that is affected by many
processes. When looking at river ecosystem health, as
increasingly required by EU legislation and public interest, an integrated view on this large scale, complex
system is required. Many scientific disciplines must work
together and deal with many different types of models
and data sets in a variety of ways. The presentation will
highlight some of the modelling and simulation tools that
support the decision support in this important environmental system.
Aso Shojaie
SESSION IV : Mathematical modeling in biology, medicine, biophysics and biochemistry
14:45-15:15
Metabolic Model Reduction by Metabolite Pooling on the
Basis of Dynamic Phase Planes and Metabolite Correlation
Analysis
J Maertens, B.M.R Donckels, G. Lequeux,
Peter Vanrolleghem
SESSION VI : Signal and image processing
chains for biological and medical applications
with emphasis on diagnosis
2 7 M ay 2 0 0 5
15:30-16:00
SESSION III : Virtual reality assisted surgery
From In Vitro Biochemistry to In Vivo Understanding of
the Glycolytic Oscillations in Saccharomyces Cerevisiae
08:30-09:00
Computer-Based Surgical Simulation for Medical Education: A
Survey
Charbel Fares, Yskandar Hamam
09:00-09:30
Collision Detection for Virtual Reality Using Ellipsoidal Fitting
Charbel Fares, Yskandar Hamam
Cigdem Demir, S. Humayun Gultekin,
Bulent Yener
16:00-16:30
Evaluation of 3-D Ultrasound Image Reconstruction
Using Monte Carlo Simulated Techniques
Antoine Abche, Aldo Maalouf, Elie Karam