Chemosphere 144 (2016) 1754e1762 Contents lists available at ScienceDirect Chemosphere journal homepage: www.elsevier.com/locate/chemosphere Activation of AhR-mediated toxicity pathway by emerging pollutants polychlorinated diphenyl sulfides Junjiang Zhang a, Xiaowei Zhang a, *, Pu Xia a, Rui Zhang a, Yang Wu a, Jie Xia a, Guanyong Su a, Jiamin Zhang a, John P. Giesy a, b, c, d, e, Zunyao Wang a, Daniel L. Villeneuve f, Hongxia Yu a a State Key Laboratory of Pollution Control & Resource Reuse, School of the Environment, Nanjing University, Nanjing, 210023, PR China Department of Veterinary Biomedical Sciences and Toxicology Centre, University of Saskatchewan, Saskatoon, Saskatchewan, Canada Department of Zoology, and Center for Integrative Toxicology, Michigan State University, East Lansing, MI, USA d School of Biological Sciences, University of Hong Kong, Hong Kong, China e Department of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong, China f United States Environmental Protection Agency, Mid-Continent Ecology Division, Duluth, MN, USA b c h i g h l i g h t s Thirteen PCDPSs caused AhR activation. Xenobiotic metabolism pathway was the primary transcriptomic response. a r t i c l e i n f o a b s t r a c t Article history: Received 9 July 2015 Received in revised form 29 September 2015 Accepted 29 September 2015 Available online xxx Polychlorinated diphenyl sulfides (PCDPSs) are a group of environmental pollutants for which limited toxicological information is available. This study tested the hypothesis that PCDPSs could activate the mammalian aryl hydrocarbon receptor (AhR) mediated toxicity pathways. Eighteen PCDPSs were tested in the H4IIE-luc transactivation assay, with 13/18 causing concentration-dependent AhR activation. Potencies of several congeners were similar to those of mono-ortho substituted polychlorinated biphenyls. A RNA sequencing (RNA-seq)-based transcriptomic analysis was performed on H4IIE cells treated with two PCDPS congeners, 2,20 ,3,30 ,4,5,6-hepta-CDPS, and 2,4,40 ,5-tetra-CDPS. Results of RNA-seq revealed a remarkable modulation on a relatively short gene list by exposure to the tested concentrations of PCDPSs, among which, Cyp1 responded with the greatest fold up-regulation. Both the identities of the modulated transcripts and the associated pathways were consistent with targets and pathways known to be modulated by other types of AhR agonists and there was little evidence for significant off-target effects within the cellular context of the H4IIE bioassay. The results suggest AhR activation as a toxicologically relevant mode of action for PCDPSs suggests the utility of AhR-related toxicity pathways for predicting potential hazards associated with PCDPS exposure in mammals and potentially other vertebrates. © 2015 Elsevier Ltd. All rights reserved. Keywords: Toxicogenomics Molecular initiating event Ligand binding domain RNA-seq Cyp1A Xenobiotic metabolism 1. Introduction Polychlorinated diphenyl sulfides (PCDPSs) have recently been reported as priority pollutants because of their persistence and environmental mobility properties (Mostrag et al., 2010). Due to * Corresponding author. School of the Environment, Nanjing University 163 Xianlin Avenue, Qixia Nanjing, 210000, China. E-mail addresses: howard50003250@yahoo.com, Zhangxw@nju.edu.cn (X. Zhang). http://dx.doi.org/10.1016/j.chemosphere.2015.09.107 0045-6535/© 2015 Elsevier Ltd. All rights reserved. their uses as lubricants and fire retardants (Naito et al., 1995; Nakanishi and Umemoto, 2002), PCDPSs have been detected in a wide range of environmental media, including dust from metal recycling plants (Sinkkonen et al., 1994), and water and sediments of the Elbe River (Schwarzbauer et al., 2000). Recently, congeners of PCDPS were detected at concentrations of 0.1e6.9 (ng/g, dry mass (dm)) in surface sediment and 0.18e2.03 (ng/L) in surface water, respectively, from the Yangtze River (Zhang et al., 2014a). However, information on mechanisms and thresholds for toxicological effects of PCDPSs was limited. J. Zhang et al. / Chemosphere 144 (2016) 1754e1762 It has been reported that PCDPSs could cause acute individual mortality cross various taxa. In vitro studies have demonstrated that several congeners of PCDPSs have antimicrobial and pesticidal activity (Ambrus et al., 2005; Logoglu et al., 2006). In vertebrates, acute mortality and hepatic oxidative stress were observed in fish and mice following exposure to PCDPS (Li et al., 2012a, 2012b; Zhang et al., 2012). Our recent study demonstrated that some PCDPS congeners can activate aryl hydrocarbon receptor 1 (AhR1) in engineered luciferase reporter gene (LRG) assays based on avian species (Zhang et al., 2014b). Further more, some PCDPSs like 2,3,30 ,4,5,6-hexa-CDPS (Relative potency, 1.9 103 TCDD) and 2,20 ,3,30 ,4,5,6-hepta-CDPS (Relative potency, 7.2 103 TCDD) demonstrated higher relative potencies than that of OctaCDD, OctaCDF, and most of the coplanar PCBs based on avian WHO-TEFs. However, it was unknown if the activation of AhR by PCDPS was conserved in mammalian systems and what role the AhR-mediated pathway might play in toxic effects of PCDPSs. The primary goal of this study was to test the hypothesis that PCDPSs could activate the mammalian aryl hydrocarbon receptor (AhR) mediated toxicity pathway. The capacity and relative potency of PCDPSs to activate this molecular event could in turn suggest relevant toxicological effects that may be of concern in mammals or other vertebrates following exposure to PCDPSs. The specific objectives were three-fold: 1) to evaluate relative potencies of 18 PCDPSs to up-regulate the AhR-mediated pathways by use of the mammalian cell-based transactivation reporter gene assay; 2) to verify whether transcriptional pathways activated in wild type H4IIE cells were consistent with AhR activation as a primary mode of action in a mammalian hepatic cell context using of RNA-seq and qRT-PCR; 3) to test the hypothesis that transcripts altered by PCDPS are the same as those previously identified to be mediated by AHR agonists. 1755 previously observed in H4IIE-luc cells at 72 h after dosing by MTS cytotoxicity assay at tested concentration range of PCDPSs, which was consistent with the previous report in COS-7 cells with the same exposure method above (Zhang et al., 2014b). Three replicates were conducted per treatment in the same plate and three independent experiments were conducted on three different plates. The cells were lysed and luciferase activity was measured at the end of 72 h incubation using a LucLite kit (Promega, Madison, WI, USA) in a Synergy H4 Hybrid Multi-Mode Microplate reader (BioTek Instruments, Winooski, VT). 2.3. H4IIE-luc data analysis 2. Materials and methods Background-corrected luciferase activity elicited by PCDPSs was normalized to percent response value relative to the maximal luciferase activity induced by TCDD. The normalized luciferase activity data were imported into GraphPad (GraphPad Prism 5.0 software, San Diego, CA, USA) and fitted to a four parameters logistic model. Concentrations of PCDPSs that elicited a response equal to x % of the positive control (PC) response, were referred to as PCx, while ECx denotes the concentrations that elicited a response equal to x% of the maximum response caused by tested chemicals. EC50, PC10, PC20, PC50, PC80 and maximal response values were determined for each replicate concentrationeresponse curve. ReP values were calculated according to the systematic framework previously proposed with some modifications (Villeneuve et al., 2000). If no significant induction activity was observed, a RePEC50 value was estimated by dividing the EC50 value of TCDD by the maximum concentration of PCDPSs tested. The relative potency of PCDPSs compared to TCDD was defined as: EC50, PC10, PC20, PC50 or PC80 of TCDD ÷ EC50, PC10, PC20, PC50 or PC80 of the PCDPSs. As described previously, the RePEC50 was excluded from RePavg calculation because it can overestimate potency (Zhang et al., 2014a, 2014b). 2.1. Chemicals and solutions 2.4. H4IIE exposure and RNA sequencing PCDPSs were synthesized and tested for the absence of contamination with PCDDs/PCDFs as previously described (Zhang et al., 2014b). Nominal concentrations of PCDPSs stock solution ranging from 3 103 to 1 107 nM were prepared in dimethyl sulfoxide (DMSO; SigmaeAldrich, St. Louis, MO, USA). Serial dilutions of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) were also prepared from a stock solution with a nominal concentration of 2.48 105 nM in DMSO and used as a reference chemical in the bioassay. For in vitro reporter gene assays, test solutions of each individual PCDPS were prepared by dissolving the serially diluted solutions with the cell culture medium before dosing. HII4E rat, hepatoma cells that had not been transfected with a stable construct containing the luciferase gene under control of the DRE, were purchased from the Institute of Basic Medical Sciences Chinese Academy of Medical Sciences (Beijing, China). Two of the PCDPSs, 2,4,40 ,5-tetra-CDPS (S7), 2,20 ,3,30 ,4,5,6-hepta-CDPS (S2) were chosen for the RNA-seq analysis because of their relatively greater potencies compared with others. HII4E cells at 1 105 cells mL1 were cultured in a six-well plate and treated with 650 nM 2,20 ,3,30 ,4,5,6-hepta-CDPS, or 350 nM 2,4,40 ,5-tetraCDPS, the PC50 concentration for each chemical, freshly dissolved in dimethyl sulfoxide (DMSO), as well as with solvent control for 72 h. Three independent experiments were conducted with three different batches of cell culture and two replicate wells of each treatment were tested in each experiment. HII4E cells were harvested after 72 h exposure and for each replicate, total RNA was extracted using RNeasy mini kit (QIANGEN, GmbH, Hilden) and stored at 80 C. Concentrations of RNA were measured using Synergy H4 Hybrid Take3 reader and quality of RNA was determined by using Agilent 2100 bioanalyzer (Agilent technologies, Santa Clara, CA, US). RNA integrity number (RIN) values for all samples were 9. For each batch of cells, two samples of RNA from each treatment were pooled. Nine RNA libraries (n ¼ 3 for 2,20 ,3,30 ,4,5,6-heptaCDPS, n ¼ 3 for 2,4,40 ,5-tetra-CDPS and n ¼ 3 for DMSO control) were prepared from 8 mg total RNA using Dynabeads mRNA DIRECT Micro Kit (Life technologies, AS, Oslo, Norway) and Ion Total RNASeq Kit v2 (Life technologies, Austin). Sequencing was performed on Ion Torrent Proton with Ion PI Template OT2 200 Kit v2 (Life 2.2. H4IIE-luc assay The H4IIE-luc transactivation cell-based assay was used to assess AhR-mediated activity and potency of chemicals as previously described (Eichbaum et al., 2014; Lee et al., 2013; Su et al., 2012). The H4IIE-luc assay is based on rat hepatoma cells that have been stably transfected with a luciferase reporter gene under the control of the dioxin response enhancer (DRE) (Hilscherova et al., 2000). The H4IIE-luc cells were plated at a concentration of ~6000 cells per well in 384-well plates at 75 mL per well (~80,000 cells/ml). The cells were then maintained in Dulbecco's Modified Eagle Medium at 37 C with 5% CO2 and 99% humidity. Twenty-four hours later, the cells were dosed by multi-channel pipette with 0.8 mL of DMSO (solvent control) or DMSO solutions of TCDD (1 104e5 10 0 nM) or PCDPSs (3 100e5 104 nM). The final concentration of DMSO was 0.5%. No cytotoxic effect was 1756 J. Zhang et al. / Chemosphere 144 (2016) 1754e1762 technologies, Carlsbad, CA, USA) and Ion PI Sequencing 200 Kit v2 (Life technologies, Carlsbad, CA, USA). response) and (2) lesser efficacy PCDPSs (the other PCDPSs except PCDPSs, maximal response < 50% of positive control response) (Fig. 1). 2.5. RNA-seq data analysis Raw sequence data were first trimmed of the adaptor with barcode and filtered with the default parameter by the torrent server. Filtered fastq files (n ¼ 9) were downloaded from the torrent server and imported into the CLC Genomic Workbench 7.0.3 software (QIAGEN, Boston, MA, USA). Each file was mapped to the Ensembl Rattus norvegicus 5.0.75 genome sequence annotated with the R. norvegicus 5.0.75 gene transfer format (GTF) file. Mapped total exon reads for 26312 genes were exported and EdgeR (Bioconductor R package, version 3.6.8) (Robinson et al., 2010) was used to estimate differential expression. A significant change was defined as False Discovery Rate (FDR) q-value < 0.1 and fold-change 1.5 or 0.667. Gene network analysis for differentially expressed genes (DEGs) was performed on the GeneMania server (http:// genemania.org/) (Warde-Farley et al., 2010) using default parameter. Network data and expression data were imported into Cytoscape software 3.2.0 for visualization and further analysis (Doerks et al., 2002). Gage (Bioconductor R package, version 2.14.4) (Luo et al., 2009) and pathview (Bioconductor R package, version 1.4.2) (Luo and Brouwer, 2013) package were used for gene set enrichment analysis (GSEA). Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways affected by 2,4,40 ,5-tetra-CDPS and 2,20 ,3,30 ,4,5,6hepta-CDPS were determined as FDR q-value < 0.1. 2.6. qRT-PCR analysis Eight genes (Cyp1a1, Cyp1a2, Cyp1b1, Gsta2, Gstp1, Nqo1, Utg1a2, and Utg2b7, full gene description see Table 1) with a reference gene (ACTB) were selected for qRT-PCR. The reverse transcription for each pooled sample was performed using a QuantiTect Reverse Transcription Kit (QIAGEN, GmbH, Hilden). Primers of target genes were designed by NCBI/Primer-BLAST software using gene mRNA template reported in the NCBI database (Table S1). qRT-PCR was performed in 96-well plates using QuantiTect SYBR Green PCR Master Mix (QIANGEN, GmbH, Hilden). The amplification was performed on StepOne Plus (Life technologies, Singapore) with an initial denaturation at 95 C for 5 min followed by 40 cycles of 95 C for 10s, 60 C for 30s. 3 replicate for each gene were performed. The Ct values of the target genes were normalized by a house-keeping gene b-actin (ACTB) using the DDCt method (Schmittgen and Livak, 2008). Fold change was calculated as 2DDCt. 3.2. Differential transcriptomic expression profiles modulated by PCDPSs demonstrated by RNA pyrosequencing Alterations to the transcriptome of wild-type H4IIE cells following exposure to two of the more potent PCDPS congeners (Fig. 2), 650 nM 2,20 ,3,30 ,4,5,6-hepta-CDPS, or 350 nM 2,4,40 ,5-tetraCDPS, was used to evaluate whether AhR activation was the dominant toxicological activity of these compounds and to test the hypothesis that transcripts altered by PCDPS are the same as those previously identified to be mediated by AHR activators. A total of 147,648,904 reads with an average length of 92 bp were obtained from the torrent server. The average sequencing depth for each library was 16,405,434 ± 1,379,350 reads. In total, 105,959,346 reads were mapped to the reference genome (Table S2). The mean mapping ratio was 71.76%. 22,017 genes had been detected in total, which showed sequencing depth was adequate for data analysis. Both 2,20 ,3,30 ,4,5,6-hepta-CDPS and 2,4,40 ,5-tetra-CDPS altered the transcriptome of untransfected H4IIE cells. Seventeen genes were up-regulated and 18 genes down-regulated in 2,20 ,3,30 ,4,5,6hepta-CDPS treatment. Ten genes were up-regulated and 3 genes down-regulated in 2,4,40 ,5-tetra-CDPS treatment (Table 1, Fig. 3a). Five up-regulated genes (Cyp1a1, Cyp1a2, NAD(P)H dehydrogenase quinone 1 (Nqo1), glutathione S-transferase alpha 2 (Gsta2), and ENSRNOG00000047433) and two down-regulated genes (ENSRNOG00000033625 and ENSRNOG00000048373) were observed in both treatments. Blastp against UniProt database were performed for the uncharacterized genes (Table 1). Most of the DEGs, including Cyp1a1, Cyp1a2, ENSRNOG00000047433 (similar to Cyp1b1), Nqo1, and Gsta2, shared by two chemicals, are known to be regulated by AhR. These five genes also ranked as the top significant DEGs (lesser FDR q-value) with greater fold-changes. Results of qRT-PCR further validated the conclusions based on results of RNA sequencing. Most qRT-PCR results of the selected genes in following exposure to 2,20 ,3,30 ,4,5,6-hepta-CDPS or 2,4,40 ,5-tetra-CDPS, were consistent with the RNA-seq results (Table S3). Linear regression between log10 transformed RNA-seq fold-change and log10 transformed qRT-PCR fold-change was statistically significant (least-squares linear regression, p < 0.0001; R2 ¼ 0.9284) (Fig. 4). This gives further confidence in the results obtained from RNA-seq. 4. Discussion 3. Results 3.1. Induction of AhR mediated luciferase activity in H4IIE-luc cells A concentration-dependent induction of luciferase activity in H4IIEeluc cells was observed after exposure to the majority of the tested PCDPSs (Fig. 1, Table 2). Luciferase activity induced by TCDD reached a plateau at higher concentrations, while the concentration response curve of most of tested PCDPSs were failed to reach an obvious plateau. 5 nM TCDD was used as positive control for the normalization of luciferase activity data in H4IIE-luc assay since the response induced was in the plateau phase. No significant luciferase activity was induced by several PCDPSs (2,20 ,3,3'-tetra-CDPS, 2,20 ,3-tri-CDPS, 2,40 ,5-tri-CDPS, 2,40 ,6-tri-CDPS, 2,3,30 -tri-CDPS) in the tested concentration ranges. Overall PCDPSs can be grouped into two general categories according to the maximal responses induced in H4IIE-luc cells: (1) greater efficacy PCDPSs (2,20 ,3,30 ,4,5,6-hepta-CDPS, 2,4,40 ,5-tetra-CDPS, 2,3,30 ,4,40 ,5,6hepta-CDPS; maximal response 40% of positive control The majority of the tested PCDPSs significantly activated AhR mediated effect in H4IIEeluc cells. Since contaminant-related artifacts have been reported in previous studies, the test PCDPSs were checked for the presence of trace contaminants that could be AhR agonists. The various PCDPS congeners were concentrated so that even trace amounts of congeners of PCDF or polychlorinated dibenzo dioxins (PCDD) or polychlorinated naphthalenes (PCNs) sufficient to be detected in the bioassay would have been detected by the high resolution gas chromatography high resolution mass spectrometry (HRGC/HRMS), however none of these known AhR agonists were observed (Zhang et al., 2014b). The confirmed lack of contaminants in the present study, along with the fact that the doseeresponse relationships observed among species for PCDPSs were consistent, allows us to conclude that the AhR-mediated potencies observed for the PCDP congeners were not artifacts. The activation of AhR mediated toxicity pathway in mammalian hepatic cells could help to explain the previous observation that PCDPSs caused acute lethality in mice (Zhang et al., 2012). Since activation J. Zhang et al. / Chemosphere 144 (2016) 1754e1762 1757 Table 1 Genes identified as differentially expressed (DEGs) in wild-type H4IIE cells exposed to 2,20 ,3,30 ,4,5,6-hepta-CDPS or 2,4,40 ,5-tetra-CDPS, compared to DMSO-treated controls. Differential expression was defined as FDR q-value 0.1 with fold-change 0.667 or fold-change 1.5 as determined using the EdgeR package. Red cell means up-regulated, gray cell means down-regulated. Gene Symbol 2,2´,3,3´,4,5,6-hepta-C DPS treatment Gene Description Cyp1a1 Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 1 cytochrome P450, family 1, subfamily a, polypeptide 2 cytochrome P450, family 1, subfamily b, polypeptide 1 (e-value=2e-103, ENSRNOG00000047433* score=816, identity=100%) Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 Mt1a metallothionein 1a Gsta2 glutathione S-transferase alpha 2 Nqo1 NAD(P)H dehydrogenase, quinone 1 Mt2A metallothionein 2A Ugt2b7 UDP glucuronosyltransferase 2 family, polypeptide B7 Gldc glycine dehydrogenase Areg amphiregulin Sod3 superoxide dismutase 3 PPIA peptidylprolyl isomerase A Aldh1a7 aldehyde dehydrogenase family 1, subfamily A7 Selenbp1 selenium binding protein 1 Tmem86b transmembrane protein 86B RGD1562259 similar to 40S ribosomal protein S20 Impad1 inositol monophosphatase domain containing 1 Actg1 actin, gamma 1 Heat shock cognate 71 kDa ENSRNOG00000034066* protein(e-value=0,score=2296,identity=99%) ENSRNOG00000007930* Ribosomal protein S2(e-value=6e-80,score=619,identity=99%) ENSRNOG00000033625* 60S ribosomal protein L35a (e-value=1e-74, score=581, identity=99.0%) ECHS1 enoyl CoA hydratase, short chain, 1, mitochondrial RNA polymerase I-specific transcription initiation factor RRN3 gene ENSRNOG00000048373* (e-value=2e-58, score=511, identity=83.0%) ENSRNOG00000015559* 60S ribosomal protein L7a(e-value=2e-92,score=766,identity=91%) Peptidyl-prolyl cis-trans isomerase A ENSRNOG00000027864* (e-value=2e-61,score=430,identity=72%) RPS28 ribosomal protein S28 ENSRNOG00000028666* 60S ribosomal protein L21(e-value=8e-66,score=568,identity=75%) Rps27l3 ribosomal protein S27-like 3 Rps19l1 ribosomal protein S19-like 1 RGD1562755 similar to 60S ribosomal protein L23a ENSRNOG00000048958* 60S ribosomal protein L37 (e-value=3e-64, score=511, identity=97%) Gns glucosamine (N-acetyl)-6-sulfatase RT1-DMb_1 major histocompatibility complex, class II, DM beta AKR1B10 aldo-keto reductase family 1, member B10 SLC25A51 solute carrier family 25, member 51 Heat shock cognate 71 kDa ENSRNOG00000034093* protein(e-value=0,score=3235,identity=99%) MRPL30_1 mitochondrial ribosomal protein L30 Itga7 integrin, alpha 7 Rps18-ps3 ribosomal protein S18, pseudogene 3 *, Uncharacterized genes were shown the blastp results against UniProt database. of AhR could increase Superoxide dismutase 2 (SOD2) acetylation and thereby decrease SOD2 activity via the mechanism of mitochondrial sirtuin deacetylase 3 (Sirt3), the PCDPSs activated AhR activity found in the present study supported the previous FDR 2,4,4´,5-tetra-CDPS treatment Fold-Change 1.83E+02 3.40E+01 5.64E-247 4.88E-95 Fold-Change 2.43E+01 7.39E+00 1.25E-68 3.79E-16 FDR 5.34E+00 4.50E-39 1.95E+00 1.08E-02 6.61E+00 2.54E+00 2.30E+00 2.22E+00 2.52E+00 1.75E+00 2.10E+00 1.98E+00 1.71E+00 3.26E+00 1.57E+00 1.50E+00 2.52E+00 3.01E-01 2.62E-01 2.81E-01 3.68E-23 5.49E-20 2.78E-16 6.04E-15 6.80E-10 1.95E-05 2.00E-04 1.14E-03 1.59E-03 4.20E-03 4.20E-03 3.62E-02 5.62E-02 8.47E-19 4.30E-14 5.48E-14 2.27E+00 1.40E+00 1.73E+00 1.54E+00 1.05E+00 1.50E+00 1.38E+00 1.66E+00 1.42E+00 1.77E+00 1.47E+00 1.43E+00 2.41E+00 6.98E-01 4.45E-01 4.83E-01 1.30E-01 4.35E-01 8.65E-06 1.08E-02 1.00E+00 3.17E-01 1.00E+00 1.27E-01 7.56E-01 1.00E+00 1.30E-01 3.73E-01 7.01E-01 1.00E+00 1.32E-01 4.63E-01 5.59E-01 2.31E-06 6.64E-01 1.30E-01 4.01E-01 2.51E-01 3.82E-01 3.37E-05 7.49E-05 2.00E-04 1.06E+00 3.57E-01 8.47E-01 1.00E+00 1.00E-02 1.00E+00 2.12E-01 3.31E-04 3.14E-01 4.05E-02 4.10E-01 5.16E-04 8.29E-01 1.00E+00 5.37E-01 2.92E-03 7.93E-01 1.00E+00 5.30E-01 3.62E-01 5.86E-01 5.01E-01 1.73E-01 4.36E-01 3.80E-01 5.67E-01 1.68E+00 2.08E+00 4.80E-03 5.16E-03 7.07E-03 3.38E-02 3.98E-02 4.95E-02 8.85E-02 9.78E-02 8.94E-01 2.56E-01 6.23E-01 4.74E-01 9.20E-01 5.72E-01 5.59E-01 6.51E-01 7.99E-01 1.02E+00 2.09E+00 2.78E+00 9.16E-01 1.30E-01 1.00E+00 1.00E+00 1.00E+00 1.00E+00 1.00E+00 1.00E+00 6.78E-04 1.08E-02 1.18E+00 1.00E+00 1.58E+00 6.19E-02 3.09E+00 1.84E+00 5.38E-01 4.74E-01 8.86E-01 1.97E-01 4.02E+00 2.45E+00 4.15E-01 6.94E-02 7.40E-02 2.00E-02 observation that lower-substituted PCDPSs decreased in mouse liver (Zhang et al., 2012). The effects of AhR activation effects by exposure to PCDPSs could be explained by two possible mechanisms. Firstly PCDPSs Fig. 1. PCDPS induced AhR mediated activity. a, Structural formulas of 18 PCDPSs tested in bioassays; b. Concentration-dependent effects of TCDD and PCDPSs on luciferase activity in H4IIE-luc cells. Data are presented as percent response values relative to that of a 5 nM TCDD positive control. Concentration-response curves are only presented for the PCDPSs that induced a significant (p < 0.05), concentration-dependent increase in luciferase activity relative to the DMSO response. Points represent mean, positive control-normalized luciferase activities obtained from 3 independent experiments, each with 3 technical replicates per concentration of PCDPS or TCDD. Bars represent standard error. J. Zhang et al. / Chemosphere 144 (2016) 1754e1762 1759 Table 2 Relative potency (ReP) values for PCDPSs in the H4IIE-luc assay. The average relative potency (RePavg) values and ReP ranges were calculated from PC10-, PC20-, PC50- and PC80based ReP values. If no induction of luciferase reporter gene activity was observed, RePEC50 values were estimated by dividing the TCDD EC50 value by the maximum concentration tested of PCDPS. Compound RePEC50 RePPC10 RePPC20 RePPC50 RePPC80 RePavg ReP range TCDD 2,3,30 ,4,5,6-hexa-CDPS 2,20 ,3,30 ,4,5,6-hepta-CDPS 2,20 ,30 ,4,5-penta-CDPS 2,4,40 ,5-tetra-CDPS 2,3,30 ,4,40 ,5,6-Hepta-CDPS 2,3,4,40 ,5,6-hepta-CDPS 2,20 ,4,5-tetra-CDPS 4,4'-di-CDPS 2,20 ,4,40 ,5-penta-CDPS 2,3,4,5,6-penta-CDPS 2,30 ,4,5-tetra-CDPS 3,4'-di-CDPS 2,20 ,3,3'-tetra-CDPS 2,3-di-CDPS 2,20 ,3-tri-CDPS 2,40 ,5-tri-CDPS 2,40 ,6-tri-CDPS 2,3,30 -tri-CDPS 1.0 NC NC 4.2 105 NC 1.1 105 NC NC NC NC 4.5 106 NC NC <1.1 106 NC <5.3 108 <2.1 106 <2.1 106 <1.1 106 1.0 8.1 3.3 1.3 4.0 3.4 NE 8.9 NE 6.7 NE 1.6 NE NE NE NE NE NE NE 1.0 8.5 2.1 1.1 3.6 3.3 NE 8.7 NE 7.6 NE 1.4 NE NE NE NE NE NE NE 1.0 NE 1.6 105 NE 3.0 105 3.9 107 NE NE NE NE NE NE NE NE NE NE NE NE NE 1.0 NE NE NE 2.8 105 NE NE NE NE NE NE NE NE NE NE NE NE NE NE 1.0 8.3 2.3 1.2 3.3 2.4 NA 8.8 NA 7.2 NA 1.5 NA NA NA NA NA NA NA 1.0e1.0 8.1 107 1.6 105 1.1 105 2.8 105 3.9 107 NA 8.7 107 NA 6.7 107 NA 1.4 106 NA NA NA NA NA NA NA 107 105 105 105 106 107 107 106 107 105 105 105 106 107 107 106 107 105 105 105 106 107 107 106 ~ ~ ~ ~ ~ 8.5 3.3 1.3 4.0 3.4 107 105 105 105 106 ~ 8.9 107 ~ 7.6 107 ~ 1.6 106 NC: Not calculated because the maximal response was not reached. NE: Not estimated because the maximum observed response was below 10%, 20%, 50% or 80% of positive control response. NA: ReP estimates not available to calculate the value. could bind to ligand binding domain (LBD) of AhR directly and form the ligand:AhR:ARNT heterodimer which further stimulate the transcription of downstream genes. However, this “agonism” mechanism still need further resting to validate. In general, PCDPSs like polybrominated diphenyl ethers (PBDEs) are larger than PCDDs and PCDFs. Because their ether and sulfide linkages are not planar, they do not meet the structural criteria of more classic AhR agonists (Villeneuve et al., 2002). While PCDPSs, like PBDEs do not seem to conform to the size and shape of the AhR, there are generally a few congeners in PBDEs that are able to elicit dioxin-like, AhR-mediated responses (Koistinen et al., 1996; Villeneuve et al., 2002; Zhang et al., 2014b). In most cases, the effects are comparatively weak, up to 100,000-fold less potent than 2,3,7,8-tetrachlorodibenzo-pdioxin (TCDD) in certain species. One possibility is that one end of the molecule can interact with the LBD with sufficient affinity to activate the receptor. However, for this to occur, the AhR would still need to undergo the transformation of losing several heat shock proteins and bind to the aromatic nuclear transport protein (ARNT) and still bind to the DRE (Hilscherova et al., 2000). Given the difficulty readily predicting these atypical interactions with the AhR LBD from structure alone, the rat-based bioassay used in the Fig. 2. Relative potency (ReP) of PCDPSs in H4IIE-luc assay. Broader represented the range of ReP values calculated for each compound (RePrange) and the bar in the middle represented the average ReP value (RePavg). present study provides an effective tool to rapidly screen and identify PCDPS congeners that can activate AhR receptor and rank their relative potencies. Alternatively, AhR could be activated by the exposure to PCDPSs via indirect mechanism. Indeed, recent studies have suggested that the inhibition of CYP1 activities by compounds compatible with the active sites can inhibit the degradation of endogenous AHR agonists in the cell culture media (Wincent et al., 2012; Henry et al., 2006). In this case AHR would be activated, but the actual agonist would not be the exposure compound. Therefore, further study should look for direct evidence of PCDPS binding to AHR. REPavg values of 3 PCDPSs including 2,20 ,3,30 ,4,5,6-hepta-CDPS, 2,20 ,30 ,4,5-penta-CDPS, 2,4,40 ,5-tetra-CDPS were similar to or greater than WHO-TEF of most mono-ortho substituted PCBs (PCB118, PCB156, PCB189 et al. at 0.00003) (Van den Berg et al., 2006). This highlights the potential toxicity that might be caused by PCDPSs. Comparing RePavg values with the number of substituted Cl atoms, RePavg of PCDPS with 2e3 substituted Cl atoms (n ¼ 7) were all NA and PCDPSs with 4e7 substituted Cl atoms (n ¼ 11) showed greater RePavg (Fig. S1). This was consistent with the previous avian results that the relative potency (ReP) of the PCDPSs increased with the increasing number of substituted Cl atoms in avian AhR1 LRG assays (Zhang et al., 2014a, 2014b). Remarkable modulation on a relatively short gene list was observed in H4IIE cells exposed to the concentration that could cause 50% AhR-mediated luciferase activity by either 2,20 ,3,30 ,4,5,6hepta-CDPS or 2,4,40 ,5-tetra-CDPS. Cyp1a1 and Cyp1a2 were the two genes up-regulated with the greatest fold change in both PCDPSs treatments. Both are known to be AhR-regulated genes and are frequently used as molecular markers of exposure to dioxin-like compounds (Kim et al., 2009). In other studies of the transcriptome of cells or organisms exposed to TCDD (Boverhof et al., 2006; Ovando et al., 2010) and other dioxin-like compounds like PCB (Carlson et al., 2009; Ovando et al., 2010), TCDF, or 4-PeCDF (Rowlands et al., 2007). CYP1 has been consistently identified as the most significant gene with the greatest fold-change. This indicated that transcriptomic responses in H4IIE cells exposed to 2,4,40 ,5-tetra-CDPS and 2,20 ,3,30 ,4,5,6-hepta-CDPS were, in all likelihood, primarily mediated through the AhR. However, these Fig. 3. Transcriptional response profile by PCDPS. a. Expression of DEGs in 3 treatments. Color in each cell stand for the log2 transformed fold change. Green means down-regulated and red means up-regulated. Hierarchical clustering was performed using Manhattan distance with ward linkage. Uncharacterized genes were marked with * and shown with blastp results against UniProt database. b. Gene network for DEGs in 2,20 ,3,30 ,4,5,6-hepta-CDPS and 2,4,40 ,5-tetra-CDPS treatment. Red means up-regulated and green means downregulated. Node size means the proportional to the node connectivity. The edge color is proportional to the connection weight between the two nodes. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.) J. Zhang et al. / Chemosphere 144 (2016) 1754e1762 Fig. 4. Linear regression of log10 transformed RNA-seq fold-change and log10 transformed qRT-PCR fold-change. RNA-seq experiment fold-change were derived from EdgeR result. qRT-PCR fold-change were calculated by 2DDCt. Points stand for gene fold-change in each treatment group. five genes were not altered to the same extent by 2,4,40 ,5-tetraCDPS and 2,20 ,3,30 ,4,5,6-hepta-CDPS, although the cells were exposed to concentrations equivalent to the PC50 in the LRG assay. This result might be due to variation in addition of chemicals to cell culture or due to inherent differences between H4IIE and H4IIE-luc cells or random errors in calculation of the PC50. Key genes from xenobiotic metabolism pathways were significantly altered by 650 nM 2,20 ,3,30 ,4,5,6-hepta-CDPS, and 350 nM 2,4,40 ,5-tetra-CDPS as indicated by GSEA analysis (FDR qvalue ¼ 0.072 in 2,20 ,3,30 ,4,5,6-hepta-CDPS treatment and 0.034 in 2,4,40 ,5-tetra-CDPS treatment). The retinol metabolism pathway (FDR q-value ¼ 0.076) and steroid hormone biosynthesis pathway (FDR q-value ¼ 0.076) were also altered by 2,20 ,3,30 ,4,5,6-heptaCDPS at the tested concentration level. These results suggested that 2,4,40 ,5-tetra-CDPS and 2,20 ,3,30 ,4,5,6-hepta-CDPS have a similar toxicological mechanism. The activated AhR mediated pathway dominated global transcriptomic responses in the cells exposed to PCDPSs at the PC50 concentration, a concentration much less than that causes cytotoxicity (not observed in both the 10 mM of 2,20 ,3,30 ,4,5,6-heptaCDPS and 100 uM of 2,4,40 ,5-tetra-CDPS treatment) (Fig. S2). Metabolism of xenobiotics was primarily mediated by CYP1A1, 1A2, and 1B1 that is well known to be the AhR-mediated pathway (Schmidt and Bradfield, 1996). Metabolism of xenobiotics by the cytochrome P450 enzymes was one of only two pathways that were significantly altered primary hepatocytes of both human and rat by exposure of TCDD and PCB126 (Carlson et al., 2009). This suggests that metabolism of xenobiotics via cytochrome P450 is the pathway in mammalian liver cells most sensitive to alteration by AhR agonists. Beside the pathway of xenobiotic metabolism by cytochrome P450-dependent related to metabolism of retinol (Fig. S3) and synthesis of steroid hormones (Fig. S4) were the two affected by 2,20 ,3,30 ,4,5,6-hepta-CDPS. The DEGs associated with these two pathways were Cyp1a1, Cyp1a2, Cyp1b1, Ugt2b7 (UDP glucuronosyl transferase) in the steroid hormone biosynthesis pathway and Cyp1a1, Cyp1a2, Aldh1a7 (aldehyde dehydrogenase), Ugt2b7 in the retinol metabolism pathway. Most of these genes not only have AhR-regulated expression, but also overlap with genes included in xenobiotic metabolism pathways. These overlapping genes suggest that activation of AhR by 2,20 ,3,30 ,4,5,6-hepta-CDPS first affected genes in the xenobiotic metabolism pathway and then altered 1761 expression of genes in the steroid hormone biosynthesis and retinol metabolism pathways through several overlapped genes (such as Cyp1). These results further suggest that, effects on these two pathways were likely the result of interactions with the AhR, rather than other potential factors, such RXR, g-protein coupled receptors, that are involved in modulating expression of genes associated with those pathways. The gene network associated with the DEGs in both treatments showed a similar result. The network affected by exposure to 2,4,40 ,5-tetra-CDPS included up-regulation of genes activated by the AhR, which then lead to up-regulation of the integrin alpha 7, primary laminin receptor (Itga7) (Fig. 3). Expression of Itga7 on skeletal myoblasts and adult myofibers and influences myogenic differentiation of mice is down-regulated in mice exposed to TCDD (Thornley et al., 2011). Changes in expression of genes after exposure to 2,20 ,3,30 ,4,5,6-hepta-CDPS showed that two metallothionein genes, Mt1a and Mt2A linked with most DEGs (Fig. 3). Consistent with the results observed here, expression of these metallothionein genes have been reported to be up-regulated by exposure to AhR agonists (Peijnenburg et al., 2010; Sato et al., 2013). Expression of ribosomal proteins was also reported to be down-regulated when exposed to TCDD (Hanlon et al., 2005). Most differential expression was observed in mice exposed to TCDD except RT1-DMb_1 (major histocompatibility complex, class II, DM beta), which was a molecular response that was specific to exposures to PCDPSs (Thornley et al., 2011). 5. Conclusion In summary, the H4IIE-luc assay showed 13 of the tested PCDPSs could activate AhR-mediated molecular toxicological pathways in mammals. The ReP values of three PCDPSs including 2,20 ,3,30 ,4,5,6hepta-CDPS, 2,20 ,30 ,4,5-penta-CDPS, 2,4,40 ,5-tetra-CDPS were similar to or greater than WHO-TEF of some mono-ortho substituted PCBs (for example PCB105,118). However, whether the activation of AhR by PCDPSs was due to direct “agonism” or indirect mechanism still need further investigation. The results of the RNAseq experiment showed that AhR-mediated genes and pathways were the most significant molecular response to PCDPSs at noncytotoxic concentrations. This supported the hypothesis that the activation of AhR is potentially the sensitive and relevant molecular initiating response with regard to the toxicities caused by PCDPSs, at least in hepatic cells. The activation of AhR mediated toxicity pathway by PCDPSs could be connected by linking AhR mediated transcriptional activation reported here, to the decreased SOD activity and oxidative stress in liver, and acute lethality in PCDPSs exposed animals (Zhang et al., 2012). These results suggest that AhR mediated toxicity pathway could be used for predicting hazards associated with exposure to PCDPSs, particularly the more potent congeners. Acknowledgments This work was supported by the National Natural Science Foundation of China (Grant No. 21322704 and 21007025), National High-tech R&D Program of China (863 Program, Grant No. 2013AA06A309). The research is also supported by the Collaborative Innovation Center for Regional Environmental Quality. Dr. Daniel L Villeneuve and Dr. John Giesy were supported by the program of 2014 “High Level Foreign Experts” (#GDT20143200016) of the State Administration of Foreign Experts Affairs, the P.R. China. Dr. John Giesy was also supported by the Einstein Professor Program of the Chinese Academy of Sciences and by the Canada Research Chair program. 1762 J. Zhang et al. / Chemosphere 144 (2016) 1754e1762 Appendix A. Supplementary data Supplementary data related to this article can be found at http:// dx.doi.org/10.1016/j.chemosphere.2015.09.107. References Ambrus, A., Füzesi, I., Susan, M., Dobi, D., Lantos, J., Zakar, F., Korsos, I., Olah, J., Beke, B., Katavics, L., 2005. 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