Sam Hendricks, Wendy Sutton and Jeffrey Stone, Oregon State University, Dept. of Botany and Plant Pathology, Corvallis, OR; Richard Sniezko and Angelia Kegley, USDA Forest Service, Dorena Genetic Resources Center, Cottage Grove, OR; and Anna Schoettle, USDA Forest Service, Rocky Mountain Abstract Polymerase Chain Reaction (PCR) Applications in White Pine Blister Rust Resistance Screening Research Station, Fort Collins, CO Abstract—A goal of breeding programs for resistance to white pine blister rust is the development of multigenic resistance, even if the genetics and mechanisms of resistance may be imperfectly understood. The goal of multigenic resistance has prompted efforts to categorize host resistance reactions at increasingly finer scales, to identify heritable traits that may confer quantitative resistance. PCR amplification of Cronartium ribicola DNA presents a sensitive and highly specific method for detection of C. ribicola in host tissues, and is well suited to screening of large numbers of samples for which other methods of pathogen detection (e.g., microscopy) may be unsuitable. PCR amplification can be used to detect presence of the pathogen in different host tissues, and so can provide useful information on putatative resistance responses that may be localized in specific tissue types. We report development of a PCR based assay for detection of C. ribicola in pine needle tissue and the results of PCR screening for C. ribicola in limber pine and whitebark pine individuals that have been identified as having as yet uncharcterized resistance responses that prevent or impair colonization in needle, shoot, root and bark tissues, and discuss the advantages of this method in operational breeding programs. PCR amplification detected C. ribicola in symptomatic regions of western white pine, whitebark pine and limber pine needles at 6 months after inoculation; C. ribicola was detected in the nonsymptomatic region of only one of six infected needles tested. Work is continuing to improve the sensitivity of the technique. The content of this paper reflects the views of the author(s), who are responsible for the facts and accuracy of the information presented herein. In: Keane, Robert E.; Tomback, Diana F.; Murray, Michael P.; and Smith, Cyndi M., eds. 2011. The future of high-elevation, five-needle white pines in Western North USDA Forest Service Proceedings RMRS-P-63. America: Proceedings of the High Five Symposium. 28-30 2011. June 2010; Missoula, MT. Proceedings RMRS-P-63. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 376 p. Online at http://www.fs.fed.us/rm/pubs/rmrs_p063.html 271