Draft Blue Mountains Elk Model User Guidelines, v. 1.0 1 Blue Mountains Elk Nutrition and Habitat Use Models User Manual 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 4/29/2013 ***DRAFT*** 2 Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 3 Table of Contents Spatial and Temporal Extents for Summarizing Model Results.............................................................5 Defining an Analysis Area for Model Application ..................................................................................... 5 Regional Landscape............................................................................................................................... 5 Local Landscape .................................................................................................................................... 7 Blue Mountains Elk Nutrition and Habitat Use Models ........................................................................9 Model Inputs and Preparation ..........................................................................................................10 Spatial data required to run models ....................................................................................................... 10 Existing Vegetation ............................................................................................................................. 12 Potential Vegetation ........................................................................................................................... 13 Wetlands ............................................................................................................................................. 13 Precipitation ........................................................................................................................................ 14 Roads................................................................................................................................................... 16 Usage Tips for All Tools ........................................................................................................................... 19 Tool Constraints and Notes................................................................................................................. 19 Steps to Run Tools in the Blue Mountains Elk Habitat Models toolbox ................................................. 20 Nutrition Tool ..................................................................................................................................22 Using the Nutrition Tool: Do’s and Don’ts .............................................................................................. 22 The Nutrition Equations ...................................................................................................................... 22 The Nutrition Tool Parameters ........................................................................................................... 23 Tool properties set under the environment tab ................................................................................. 25 Nutrition tool output file definitions .................................................................................................. 25 Elk Habitat Use Tool .........................................................................................................................27 Using the Habitat Use Tool: Do’s and Don’ts .......................................................................................... 28 Habitat Use Tool Parameters .............................................................................................................. 29 Tool properties set under the environment tab ................................................................................. 31 Habitat Use Tool output file definitions.............................................................................................. 32 Update Canopy Cover Tool ...............................................................................................................34 Additional Input Data Needed for the Update Canopy Cover Tool ........................................................ 35 Using the Update Canopy Cover Tool: Do’s and Don’ts.......................................................................... 36 Update Canopy Cover Tool Parameters.............................................................................................. 37 Tool properties set under the environment tab ................................................................................. 38 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 4 Update Canopy Cover Tool output file definitions ............................................................................. 38 Interpretation and Summaries of Model Results ...............................................................................38 Summarizing Results from the Nutrition Model ..................................................................................... 39 Regional Landscape: Existing Condition and any Management Alternatives ..................................... 40 Changes in Regional Landscape: Existing Condition Relative to each Management Alternative ....... 41 Changes in Local Landscape Relative to each Management Alternative ........................................... 42 Summarizing Results from the Elk Habitat Use Model ........................................................................... 42 Regional Landscape: Existing Condition and any Management Alternatives ..................................... 43 Changes in Regional Landscape: Existing Condition Relative to each Management Alternative ....... 46 Local Landscape: Existing Condition and any Management Alternatives .......................................... 50 Changes in Local Landscape: Existing Condition Relative to each Management Alternative ............ 50 ArcGIS SQL, Field Calculator, and Raster Calculator Tips and Tricks ....................................................51 SQL .......................................................................................................................................................... 51 SQL operators (copied from the Arc Help files) .................................................................................. 52 Field Calculator........................................................................................................................................ 55 Raster Calculator ..................................................................................................................................... 56 Literature Cited ................................................................................................................................58 English Equivalents ..........................................................................................................................59 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 5 Spatial and Temporal Extents for Summarizing Model Results The habitat use model is applied across regional landscapes. However, summaries of model outputs can be completed at two spatial extents: (1) the regional landscape, which should be an area >10,000 ha (approx. 25,000 acres) on which the Nutrition and Habitat Use Tools are applied (analyzed); and (2) the local landscape, areas of 800 ha or larger and nested within the regional landscape, for which a subset of the results from the regional landscape analysis can be summarized. Users can summarize results for one time period (existing condition) as well as for different management alternatives (future conditions), under which potential effects of management may be evaluated and results contrasted with the existing condition. These summaries can be completed for both the regional and local landscapes (see “Interpretation and Summaries of Model Results”). Defining an Analysis Area for Model Application Selection of an analysis area for running the nutrition model, elk habitat use model, or both will depend on the specific objectives of the user. However, general guidelines should be followed to ensure that the models are applied in a way that is consistent with their development and intended usage. We provide basic guidance below for defining analysis areas at both regional and local extents. Regional Landscape Regional analyses with the nutrition and elk habitat use models typically address management of elk distribution across large areas (e.g., 10,000 ha or more) and across multiple land ownerships. Model outputs can be used not only to inform management of elk distribution, but also to estimate some measures of animal performance (Cook et al., n.d. b). Elk will generally use areas that maximize animal performance; thus, effective management of elk distributions across large landscapes and multiple land ownerships may also benefit elk performance. We recommend using ecological boundaries that are based on collaboration and agreement with state wildlife agencies to select the analysis area over which the models will be applied. These boundaries, as defined in partnership with the Oregon Department of Fish and Wildlife and Washington Department of Fish and Wildlife, reflect landscape-scale patterns of elk distribution and use across multiple land ownerships on summer range. For example, a population of elk in a particular state wildlife management unit may be located disproportionally on private lands, where use is not desired compared to adjacent public lands, where use is desired. Identifying regional boundaries that encompass the entire landscape of potential summer range across these land ownerships is essential to comprehensively evaluate nutrition and habitat use with the models. Analysis within a well-selected 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 6 study boundary allows different management options to be considered in relation to desired distributions of elk in time and space. By using an ecologically defined boundary the user will avoid imposing biologically meaningless boundaries, such as ownership or other land allocation, on the study area. However, elk movements are often impeded by features such as interstate highways, residential and commercial developments, and large river corridors; these barriers should be considered when defining an analysis area. In some instances, the user will be most interested in modeling elk use in administratively defined areas such as a game management unit, Forest Service District, or Bureau of Land Management (BLM) resource area. In these cases, the model can still be applied across an ecologically defined area, but results summarized by administrative unit. Regardless of the primary motivation in selecting a study area, model users should carefully consider knowledge of local elk distribution and movements in the evaluation area. When predicting elk nutritional conditions with the nutrition model, the minimum-sized area for analysis will depend on the origins of the input data. If biologists have field data available (e.g., canopy cover, or abundance of elk forage species), the analysis area can be a stand or site. The empirical data used to predict nutrition were collected in macroplots of at least 1.0 ha in size; thus, applying the nutrition model to smaller areas should be avoided. If using model inputs derived from remote sensing, such as canopy cover from LANDFIRE, users should select a larger area such as a subwatershed (e.g., 4,000 ha). If you are using remotely-sensed data but also have a more local data set for comparison, we suggest comparing the two products to better understand the quality of the remotely-sensed layer. Generally, these products (e.g., LANDFIRE existing vegetation type; http://www.landfire.gov/NationalProductDescriptions21.php) are suitable for landscape to regionalscale analyses but are insufficiently accurate for local or stand-level applications. For predicting elk habitat use with the Blue Mountains elk habitat use model, we recommend that the minimum regional analysis area be ~10,000 ha or larger. This scale corresponds to elk landscape use for a regional (e.g., multiple local herds) population of elk. The elk habitat use model was developed and validated in a variety of study areas ranging from 2,400 to 53,000 ha. Even when evaluating the potential effects of management actions (e.g., road closures or silviculture treatments) in smaller, local areas (~2,000 ac or larger), it is important to retain the original regional scale used to develop the models when making predictions of habitat use. One can always “zoom in” to isolate an area and summarize results within smaller local landscapes after predictions are made for the larger study area (see Local Landscape below). Before the elk habitat use model can be applied, a 4-km buffer should be drawn around the regional landscape. The model is run inside this larger area (i.e., regional landscape plus buffer) to capture potential effects of roads and vegetation conditions adjacent to the analysis area. This distance was based on modeling results demonstrating that elk respond to roads open to the public as far as 4 km away. Thus, an open road in the buffer area may affect predicted use by elk within the analysis area and must be accounted for when the elk habitat use model is applied. However, when summarizing results 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 7 of the elk habitat use model, only use the area within the regional landscape boundary; the buffer area should not be included in data summaries. An additional step before model application is to mask or set null values for any land cover types for which predictions of elk use are illogical (e.g., urban/developed landscapes, rivers, lakes, reservoirs and other water bodies, scree and talus slopes). The habitat use model should be applied across all lands within the analysis area (other than the masked areas mentioned above), regardless of ownership or other status Figure 1. A regional analysis area, its 4-km buffer, and two local landscapes with treatment units displayed for each. The elk nutrition and habitat use models are applied within the regional landscape and its buffered boundary; however, data are summarized only within the regional landscape boundary (that is, without the area of the 4-km buffer included), and within local landscapes if desired Local Landscape Analysis of large landscapes is focused on comprehensive management of elk distributions across large areas of summer range that encompass multiple land ownerships and associated landscape management issues. By contrast, analysis of local areas is more site specific and often relates to particular management activities on a given area and land ownership. Examples of local effects might be a set of commercial thinning units, paired with changes in access management, and evaluating how these local activities might affect an individual herd of elk on summer range in a small area typically used by 10-20 elk (e.g., areas as small as 800 ha). These local, smaller-scale summaries complement the regional-scale application of the nutrition and elk habitat use models, and model results can be compared among projects or to the regional landscape results (see “Interpretation and Summaries of Model Results” for guidance on specific data summaries of model outputs). Local landscapes within the larger regional area (including the buffer around the 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 8 actual treatment units; see explanation below) should be >800 ha, due to the spatial resolution and accuracy of the vegetation layers used in developing the elk habitat use and nutrition models. Values for model covariates in areas smaller than 800 ha will likely be below the precision required by the models. In most cases, local landscape summaries will involve a collection of several small treatments, all of which should be summarized within one boundary. For example, if the proposed management involves 20 small thinning units, a polygon should be drawn around these units and model outputs summarized within this boundary (local landscape summary boundary). As described for the regional level, a buffer should also be applied around the project area. This buffer is required because benefits will extend to areas near but outside the actual treatment sites. For example, with decreased cover from thinning dietary digestible energy (DDE) may increase for pixels near the treated sites. If a basic minimum convex polygon were drawn around the units (i.e., essentially “connecting the dots” of the outermost points of each unit), these benefits would not be completely accounted for in local landscape summaries of nutrition or predicted elk use. There is no hard and fast rule to guide the establishment of local landscape boundaries, within which the results of the prior regional landscape modeling results are summarized. However, the way in which the boundary is drawn around the local analysis area will affect subsequent comparisons of model results (e.g., percentage of area by nutritional class) among potential management alternatives. If the actual acreage treated is a very small percentage (e.g., <5%) of the local landscape, improvements in nutrition or predictions of elk habitat use will be difficult to detect. Again, there is no hard and fast guidance in this regard. The exact spatial arrangement and size of the treatment units within the boundary of the local analysis area will affect all summaries at this scale, so careful consideration is required in delineating this boundary to ensure that real benefits of management treatments will be detected. To reiterate, all model runs (analyses) occur at the regional landscape extent; that is, this is the spatial extent at which the models are applied. Once results are obtained for the regional landscape, we recommend that you summarize outputs from your regional landscape first, and then further summarize results for any local landscapes of interest. You can “zoom in” to these local boundaries for your calculations and compare summaries across local landscapes or to the larger, regional landscape. An exception is application of the nutrition model. If desired, the nutrition model can be applied in a local landscape independently of the elk habitat use model. That is, a local landscape can be input as the study area boundary for application of the nutrition model by itself, to estimate existing nutritional conditions, or to project nutritional conditions under several alternatives in which vegetation is altered across the local landscape. However, as stated above, the elk habitat use model should only be applied across the regional landscape, although model outputs can be summarized for the regional and local landscapes. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 9 Blue Mountains Elk Nutrition and Habitat Use Models We developed two different primary models under the auspices of the Blue Mountains elk modeling project – an elk nutrition model and an elk habitat use model. In order to run these models in a GIS framework, these models were incorporated in an ESRI ArcGIS toolbox (Blue Mnts Elk Habitat Models Toolbox), using ESRI ArcGIS 10.0 ModelBuilder. The Blue Mountains Elk Habitat Models Toolbox contains five tools, including two Nutrition Tools (Ag, no Ag), two Habitat Use Tools (Ag, no Ag), and the Update Canopy Cover Tool. Figure 2. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 10 Model Inputs and Preparation Spatial data required to run models (Table 1.) Data Layer Source Attribute Field to add n/a Suggested Data Type n/a Attribute as: Study Area Boundary User defined Buffered Study Area Boundary Created by adding 4km buffer to Study Area n/a n/a n/a Existing Vegetation Landfire EVT (existing vegetation type) layer for 2001 or 2008; pick year closest to time period of interest Model Text field Forest Text field “H” = habitat types to model (land cover types potentially used by elk) or “M” = masked (land cover types not used by elk) or “AG” = Ag type “F” = Forest or “NF” = nonforest See “Existing Vegetation” below for more details Canopy Cover http://www.landfir e.gov/ Landfire CC (canopy cover) layer for 2001 or 2008 (not EVC); pick year closest to time period of interest http://www.landfire. gov/ 4/29/2013 n/a Run this layer through the Canopy Cover Update tool to capture recent timber harvest, fires, or other disturbances in your study area that may affect CC; canopy cover update is not an essential step in order to run the habitat use or nutrition tools successfully ***DRAFT*** Where data are used In both Nutrition and Habitat Use tools In both Nutrition and Habitat Use tools In the Nutrition tool as an input to create DDE; In the Habitat Use tool to create the mask (i.e., designate where the tool will be applied) In the Habitat Use tool to create the percent forest covariate In the Nutrition tool as an input to create DDE Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 Data Layer Source Potential Vegetation Landfire ESP (environmental site potential) layer See “Potential Vegetation” below for more details Wetlands See “Wetlands” below for more details Precip See “Precipitation” below for more details EVI (Enhanced Vegetation Index) DEM 11 Attribute Field to add Classification Suggested Data Type MUST BE Short Integer USFWS National Wetlands Inventory Wetland Short Integer PRISM http://www.prism.or egonstate.edu/ Download the data, project to meters, then convert units to mm. http://www.fws.go v/wetlands/ Download the 30-yr average for the current month (e.g., August) and prior month (e.g., July); 800-m cell size, units are mm x 100 MODIS 250-m cell size Digital Elevation Model Must be in meters “1”=Rangelan ds “4”=Dry Forest “5”=Wet Forest “-9”=Nodata “1” = Used or “0” = not used Divide raster by 100 to convert units to mm Where data are used In the Nutrition tool to define which DDE equation is applied In the Nutrition tool as an input to create DDE In the Nutrition tool as an input to create DDE Note: if you chose a modeling month other than August, your Current and Prior months precip will need to be changed to match your modeling date No modifications needed Note: if you chose a modeling month other than August, make sure the EVI data you download is appropriate for the modeling date you chose. Pick EVI’s two week span that best covers the modeling date you chose No modifications needed http://ned.usgs.gov/ Download the 1 arcsecond NED layer (approx. 30 meter cell size) 4/29/2013 Attribute as: ***DRAFT*** In the Nutrition tool as an input to create DDE, but only when ag lands are present In the Habitat Use tool to create the slope covariate Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 Data Layer Source Roads GTRN (ground transportation network, a statewide BLM layer) for base See “Roads” below for more details http://www.blm.gov/ or/gis/datadetails.php?data=ds0 00041 12 Attribute Field to add Open Suggested Data Type Short Integer or text Class Short Integer Attribute as: “1” = Open or “0” = Closed 1, 2, 3, 4, etc. Where data are used In the Habitat Use tool to create the distance to roads covariates Existing Vegetation The EVT (existing vegetation type) grid layer attribute table is used to model existing vegetation types. Two highlighted attributes were added to this dataset, MODEL and FOREST. The MODEL attribute defines vegetation types as a) types used by elk and modeled (H = habitat); b) types not used by elk, i.e., exlcluded from the modeling process (M = mask); and c) types considered agriculture lands (AG = agriculture). Types classed as “H” are those that the modeling team deemed as potential habitat for elk in this region. The MODEL attribute is used in the Nutrition tool to identify agricultural lands, which are assigned a default DDE value, and also to define the mask (where the model will be applied). The FOREST attribute defines vegetation types as a) forested (F) or b) non-forested (NF). The FOREST attribute is used in the Habitat Use Tool to create the percent forest covariate. The attribute name (MODEL and FOREST) and the attribute codes (H, AG, M or F, NF) are arbitrary and can be altered. The Blue Mountains Elk toolbox uses the EVT layer in SQL (stuctured query language, a programming language) expressions which are customizable based on the attribute names and codes you choose. For example, an SQL expression to select land cover types to model would read “MODEL” In (‘AG’, ‘H’). An SQL expression to select forest types would read “FOREST” = ‘F’. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 13 Potential Vegetation The ESP (environmental site potential) grid layer attribute table is used to model potential vegetation types. The highlighted attribute, Classification, was added to this dataset. The Classification attribute defines vegetation types as 1=Rangelands; 4=Dry Forest; 5=Wet Forest; and -9=Nodata. These classifications were defined by an elk nutrition expert based on the published descriptions of each potential vegetation type. This attribute is used in the Nutrition tool to define which DDE equations will be applied to particular portions of your study area. The attribute name (classification) is arbitrary and can be altered but the attribute codes are SPECIFIC and must not be altered; the tool code is written to recognize these values (-9, 1, 4, 5) and only these values. If you are modeling outside these boundaries and create your own classified attribute, remember to use these specific codes (-9, 1, 4, 5), although the attribute (field) name can be different. See the Landfire website for more information about the ESP layer http://www.landfire.gov/NationalProductDescriptions19.php. Wetlands The wetlands feature layer attribute table. This dataset has one added attribute (Wetlands) that defines used or not used wetlands features. For our models we consider only two wetland types as elk habitat, identified in the WETLAND_TY as Freshwater Emergent Wetlands or Freshwater Forested/Shrub Wetlands. All other wetlands do not resemble wet meadow types, which are the vegetation types for which the elk grazing trial DDE values were estimated. The two wetlands features identified as habitat are assigned default DDE values in the Nutrition tool. The attribute name (Wetlands) and the attribute codes (1, 0) are arbitrary and can be altered. The Blue Mountains Elk tools use the Wetlands layer in SQL expressions which are customizable based on the attribute name and codes you choose. For example, an SQL expression to select wetlands used would read “Wetlands” = 1. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 14 Precipitation The precipitation data home page from Prism. Download the data (compressed zip file .gz) from the Prism website http://www.prism.oregonstate.edu/products/matrix.phtml?vartype=ppt&view=maps (either the 30-arcsec (800 m) Normals or the 2.5-arcmin (4 km) Monthly). Save the zip file to your computer follow these instructions for extracting data from a compressed zip file (.gz) http://www.prism.oregonstate.edu/pub/prism/download.html. Be sure to project the data in a meters projection BEFORE you convert to mm units. The original data is downloaded in decimal degrees, WGS 1984. Example steps to download and convert precip data, using Aug 30 yr Normal: 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 15 1. Download 30 yr Normal 1981-2010 (us_ppt_1981_2010.08.gz), file size is aprox. 26 mb. 2. Extract the file using winzip (us_ppt_1981_2010.08), file size is now aprox. 117 mb (larger file size means the file was automatically decompressed when unzipped). 3. Create an ASCII file by adding .asc or .txt, manually change file name from us_ppt_1981_2010.08 to us_ppt_1981_2010_08.txt 4. Convert Ascii to raster, use the ASCII to Raster tool to convert to a grid. This grid will be in decimal degrees and next needs to be converted to meters. 5. If no spatial reference is recognized in the newly created grid, then set the coordinate system to WGS 1984. 6. Project raster, use Project Raster tool, you can import a projection that is used in the Landfire data (Nad 1983 Albers), remember to change the cell size to 800 m if you are converting the 30 yr normal or change to 4000 m if you are converting the monthly. Below is an example of the Project Raster tool parameters. 7. Convert units to mm, use the Raster Calculator tool and type in the expression “grid name” / 100 and then create the Output Raster name and file path. NOTE: by setting the mask in the Environment Settings of this tool you can also clip the precip down to a more manageable size if desired. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 16 Roads The roads feature layer attribute table. The two highlighted attributes were added. The Open attribute defines roads as open (1) or closed (0). The Class attribute defines the Class level of only the open roads. Both the attribute names (Open, Class) and the attribute codes (0,1 and 0,1,2,3,4) can be altered. The Blue Mountains Elk tools use the Roads layer in SQL expressions which are customizable based on the attribute names and codes you choose. For example, an SQL expression to select open roads would read “Open” = 1; an SQL expression to select class 3 or 4 roads would read “Class” In (3, 4) or “Class”=3 or “Class”=4. Road Classification Guidelines Class I open roads are defined as any federal or state highway. Class II open roads are county roads, two-digit Forest Service roads, or any other through roads that branch from a Class I road or that branch from roads within or exiting a town or city. In some special cases, a dead-end road may be designated as Class II, such as a road leading from a town that ends at a trailhead of a wilderness area (e.g., the Lostine Road in Wallowa County). Class III open roads are roads that branch directly from a Class II road, or are short (<1/4-mile) dead-end roads that branch directly from a Class I road. Class IV open roads are roads that branch directly from a Class III road, or are short (<1/4-mile) deadend roads that branch directly from a Class II road. This classification system is an index of the degree of “remoteness” of a given part of an analysis area from human uses, based on the rate of motorized traffic that is likely to occur along different roads that 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 17 have varying distances from main access points provided by federal and state highways. Class I roads receive the highest rates of traffic, and subsequent classes should be expected to receive progressively lower rates of traffic as roads increasingly branch and become farther away from the main access points. This basic premise of decreasing traffic rates with increasing levels of road branching from main access points has been studied and well-documented in traffic engineering research. In addition, elk avoidance of open roads has been shown to increase with increasing rates of traffic, and results of our modeling work validated this pattern. That is, elk avoidance of Class I or II roads was stronger than for Class III or IV. Together, these two roads covariates have a strong effect on summer elk habitat use. Note that only roads open to public motorized uses during summer are included in the classification system (see details below). Also, open roads that branch from Class IV roads are NOT included, as elk did not avoid the most remote roads that would be classified as Class V, VI, VII, or higher. The following steps can be used to map and derive the two roads model covariates as part of running the Blue Mountains summer elk habitat model: 1. Start with a base roads layer that has the most roads digitized. Attribute all the federal and state highways as open and class 1. 2. Note that many study areas may not have Class I roads present within the buffered study area boundaries, but the classification system for the study area will depend on starting the classification process from the Class I road nearest to the buffered study area boundaries. 3. Clip out the roads layer for the buffered analysis area (the buffer addresses any edge effects that may influence elk behavior near the edge of your study area) and name it something meaningful. 4. Examine this layer for any missing open roads. Closed roads are not considered in the model. The definition of “open” for the Blue Mountains Habitat Use Model is any road or trail open to public motorized use, including open trails used by all-terrain vehicles or dirt bikes. Make sure the layer contains all roads open to public motorized use during summer for all land ownerships in the buffered analysis area. 5. Digitize any missing open roads using a current aerial photo background as a guide, e.g. NAIP. 6. The remaining open roads need to be attributed as open. Select all open roads in your new clipped roads layer (you may want to display roads from other GIS enterprises such as USFS or local counties to help identify open roads on public and private lands) and calculate Open = 1 (Make sure only the features you want to update are selected, Open the attribute table and select or highlight the attribute field called “Open”, Open the Field Calculator, type 1 in calculator box and click OK). When you are finished, the Open attribute should contain only 0 or 1s. Save and export the selected roads (all open roads) to a new shapefile called Open_Roads. Exporting the open road layer is optional but could help eliminate the distractions of the remaining closed roads. 7. To begin classifying open roads, first select through roads (i.e., roads that are not dead ends), such as county roads or well-travelled forest roads that connect with federal and state highways, or that connect with a town or city, and assign them BMEMClass = 2. In general, Class II roads are easily traveled by two-wheel drive passenger cars with low clearance. These roads not only connect directly with a state or federal highway or with a city or town, but typically are well-maintained as through roads that receive regular traffic use (e.g., paved county or forest road or a well-maintained gravel forest road). 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 18 8. After Class II roads are defined, select open roads that branch directly from Class II roads and assign them BMEMClass = 3. Some through roads that branch from a Class II road also should be assigned as Class II if such roads can be easily traveled by low-clearance two-wheel drive passenger cars and also are known to receive frequent traffic in the same manner as the Class II road from which they branch. The same is true for open roads that branch from a Class III road but that loop back to the Class III road (all of these road segments would be Class III). That is, a set of two or more roads may branch and ultimately loop back around to the original branch. These road segments would typically maintain the same class throughout all road segments (essentially a loop road with multiple branches). 9. Assign BMEMClass = 4 for roads that branch directly from a Class III road. 10. Continue classifying all open roads with these process steps for the entire analysis area (buffered study area) until all such roads are assigned as Class I, II, III or IV. Remaining open roads that do not meet the criteria for Class I – IV are not used in the model and can remain attributed as 0 (the default value for BMEMClass). This process of road classification is depicted below. In some cases, designation of Class III or IV roads may need to be modified to reflect local knowledge of road uses. For example, a road system may branch twice in a short distance (two road branches within ¼-mile of each other) but the same road class might be maintained because the road system is known to maintain a consistent level of traffic before versus after the branches. These special cases need explicit justification based on local, documented knowledge of road systems and traffic. Map showing the typical examples of road classification and some special cases based on the branching rules described in text. Examples include: (1) designation of federal and state highways as Class I; (2) designation of open through roads as Class II that branch from Class I, in this case a twodigit Forest Service road; (3) designation of open roads as Class III that branch from Class II; (4) designation open roads as Class IV that branch from Class III; (5) maintenance of the same road class for a set of two or more road segments that branch but that ultimately loop back around to the original branch; (6) exclusion of dead-end open roads that branch from Class IV, which are roads that would be Class V, VI, VII, or higher; and (7) a short (<1/4-mile) dead-end spur branching from a Class II and designated as Class IV . 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 19 Usage Tips for All Tools • • • Use ArcGIS 10.0 or newer with an ArcInfo license and Spatial Analyst Extension. We recommend that input grids be 30-m resolution. We recommend that all input grid and feature layers have the same projection and that they match the *.mxd data frame coordinate system and projection to prevent any shifts or errors in calculations. The existing vegetation grid layer (e.g., EVT) contains vegetation types reclassified into two attributes. 1. The Model field is where we classified each vegetation type as habitat used by elk, habitat not used by elk, or agriculture. 2. The Forest field is where we classified each vegetation type as forest or non-forest. The potential vegetation grid layer (e.g., ESP) contains vegetation zones classified into three groups that depict which nutrition algorithms are used to calculate DDE. 1. The CROSSWALK field is where we classified each ESP zones occurring in the Blue Mountains Region of Oregon or Washington as 1=Rangeland, 4=Dry Forest, or5= Wet Forest. 2. Any vegetation zone that is not cross-walked is given a No Data (-9) assignment and is not suitable for modeling with these equations. In-line variable substitution is used in these tools. Ex: %Study Area Code%, as seen in the file path name of many processes, will be replaced with the alpha/numeric code you chose. See the ArcGIS Desktop Help for further assistance. Output grids will have the same projection and resolution as the input Existing Vegetation Grid Layer (e.g., EVT, 30-m) and will be clipped to the boundary of the Study Area Boundary Plus Buffer polygon. The study area code parameter will be the prefix for all output file names. Some outputs (e.g., mean_dde) have been summarized within a 200-m radius circle surrounding the center pixel. This is the scale at which the models were developed and validated, and should not be changed. Certain settings are pre-set, located under the Environment Tab. These settings may need to be edited if errors occur when running the tool (table 1, table 3, and table 5). Be sure to check all parameter fields in each tool to make sure the default settings are appropriate for your data and study area. Default parameter inputs may be incorrect and need to be reset. • • • • • • • • Tool Constraints and Notes • Some tool inputs are vector format and others are raster format. During tool execution all inputs are converted to raster format and the outputs from the Nutrition and Habitat Use Tools are raster format. Summary instructions are given for raster format outputs. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 • • • • 20 The equations used in the Nutrition tools were derived from plot data collected in eastern Oregon. Running this tool in other regions or in a study area with portions outside the Blue Mountains modeling boundary may not predict nutrition accurately. The tools are intended for application with 30-m resolution raster data, and are not recommended for use at other resolutions. Certain existing vegetation types (e.g., Vegetation types in EVT) are unsuitable as potential elk habitat (e.g., water, ice, talus); we assigned these types a value of “M” (mask) and modeled them as “no data.” Similarly, some potential vegetation types could not be cross-walked to one of the three ESP zones used in the nutrition equations; we also masked out these types as “no data.” The Nutrition Tools assigns any land cover types defined as agriculture a default value of 2.40 kcal/g for non-irrigated and 2.65 kcal/g for irrigated lands for DDE; that is, DDE is not calculated for agricultural lands using the equations in the Nutrition Tools in ArcGIS. If agricultural lands are in your analysis area and you know the specific crops grown, adjust DDE values upward or downward as appropriate, based on standard crop quality information. Steps to Run Tools in the Blue Mountains Elk Habitat Models toolbox To add the Blue Mnts Elk Habitat Models toolbox to an ArcMap project file and run from ArcMap: 1. Open ArcMap. 2. Open/Show the ArcToolbox window if not already open. 3. Right click on ArcToolbox and choose “Add Toolbox”. 4. Navigate to the folder where you have saved the “Blue Mnts Elk Habitat Models.tbx,” select the toolbox and then click Open. 5. Once the toolbox is added to ArcMap, expand the “Blue Mnts Elk Habitat Models” by clicking the plus sign next to the toolbox. Five separate tools will be listed. Double click on the tool you wish to run. (You may also right click on the tool and choose Open). a. A window will open with showing the tool with several blank fields that need to be populated with the appropriate input data before running the tool; once you have selected these input layers, click “OK”. b. This example screen shot shows the nutrition tool ready for inputs. Populate each box with your data. You can browse to the data by clicking the yellow browse button or if the data is already added to the ArcMap document, you can click on the drop down arrow and select the appropriate layer. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 21 c. Be sure to check any parameters that auto populate when the parent parameter data is added. The default value may or may not be correct for your data. If not correct, replace with an appropriate SQL expression or attribute field for your data. d. Be sure to set the Potential Vegetation Classification Lookup parameter correctly. The default field Value will auto populate after the PNV grid is selected in the parameter box just prior to the Lookup Column parameter. If this parameter is left at the default setting (Value), the tool will not run correctly. e. Once all parameters are filled in with the correct data layers and SQL statements, click “OK” to run the tool. To add the Blue Mnts Elk Habitat Models toolbox to ArcCatalog and run a tool: 1. Open ArcCatalog. 2. Open/Show the ArcToolbox window. 3. Add the Blue Mnts Elk Habitat Models Toolbox as you would in ArcMap. 4. Follow Step 5 from above to run the tools as you would in ArcMap. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 22 Nutrition Tool Introduction The elk habitat use model requires five covariates (Rowland et al., n.d.). One of these is mean dietary digestible energy (DDE). The following text and tables describe processes used to derive DDE and how to run the Nutrition Tool to obtain predictions of DDE in an example study area. The nutrition model is a stand-alone application that can be applied independently to assess nutritional conditions for elk. However, mean DDE within a 200-m radius circle (one of the model’s outputs) is also used as one of the four inputs to run the full Habitat Use Tool. Note: The Nutrition Tool produces both “raw” DDE values for each pixel in the output grid and mean DDE. The raw values are used in mapping and for summaries of nutrition across regional or local landscapes (see “Summarizing Results from the Nutrition Model”), whereas the mean DDE output grid is the input used in the Habitat Use Tool, but can also be used in summaries. The Nutrition Tool, inputs required and the outputs created, mean DDE, used in the Habitat Use tool. There are five inputs required to calculate DDE: • Overstory canopy cover (%) of all live trees • Existing vegetation type (EVT) • Potential natural vegetation (ESP) • Cumulative precipitation • Date Using the Nutrition Tool: Do’s and Don’ts The Nutrition Equations The equations and appropriate tool parameters to predict DDE are embedded within the Nutrition Tool. For users who intend to predict elk nutritional conditions outside the modeling framework we created in ArcGIS (i.e., the Nutrition Tool created in ModelBuilder), the equations and explicit methods to quantify forage abundance and DDE are available upon request. The equations, however, can also be found by opening the Nutrition Tool in “Edit” mode. For model users interested in simply exploring the relation between different values of the input variables (e.g., tree canopy cover, precipitation, date) and resulting DDE values in a non-spatial environment, the equations can be copied to a spreadsheet and used with multiple, plausible combinations of the input variables. We describe the Nutrition Tool in this section (“Using the Nutrition Tool: Do’s and Don’ts”). See Table 2 for a list and description of the outputs created from the Nutrition Tool. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 23 The Nutrition Tool Parameters (Table 2.) Parameter Explanation Data Type Output Workspace Folder Select the folder location you want the tool outputs to be saved in. Within this folder, a temporary "temp" folder is automatically created. Each output will be saved in the Output Workspace Folder if it's a permanent file or the temporary folder if it's an intermediate file. If you do not have overwrite processes activated (found in the Tools menu, Options, Geoprocessing Tab) you will need to create a new folder each time the tool is run. Workspace Study Area Code 4 char max Choose an arbitrary (but meaningful) String four character code (alpha/numeric) that represents the analysis area the tool is being calculated for. It cannot exceed four characters nor can it begin with a number, or the tool will not run. This code will precede the name of each output layer. Study Area Boundary Plus Buffer Select the buffered regional landscape Feature study area. A typical buffer extends 4km Layer beyond the study area boundary. Including the buffered area allows the tool to account for edge effects that may influence elk behavior. Output layers will be clipped to this boundary. Choose Month 7-9 Choose the number of the month (7-9), 7=July; 8=August; 9=September) for which you are determining nutrition. This tool was developed using late summer data so for the most accurate estimates use one of those three months. Choose Day 1-31 Choose the number of the day (1- 31) for Double which you are determining nutrition. This tool was developed using date as an input covariate. Date accounts for 4/29/2013 ***DRAFT*** Double Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 Parameter Explanation 24 Data Type seasonal variability. Existing Vegetation Grid Select the existing vegetation grid that contains a forest attribute (classifies as forest or non-forest) and a vegetation type attribute (classifies as habitat used, masked out, or agriculture lands). These two attributes will often be created by the user specifically for use in the Blue Mountains Elk Habitat Models. Raster Layer Expression to Select Existing Vegetation and Ag Land Types Create an SQL statement that selects which existing vegetation types the tool will model. These are the ‘habitat used’ vegetation types that elk will inhabit, and agriculture types. Here, non-habitat vegetation (such as barren lands, developed, rock/sand, water, etc.) should be excluded from model analysis. SQL Expression Expression to Select Ag Lands Create an SQL statement that selects only the agriculture land types. SQL Expression Current EVI Select the EVI grid layer that is for the current modeling month. This should be data for the 16 day span that covers the majority of the current modeling month. Raster Layer Canopy Cover Grid Select the existing canopy cover grid that Raster contains canopy cover data as attributes Layer to be used in the tool. Potential Natural Vegetation Select the potential vegetation grid that contains a classified attribute for each vegetation zone (or series) types. The classified attribute must be an integer and include -9 for nodata, 1 for rangelands, 4 for dry forest, 5 for wet forest. Raster Layer Potential Vegetation Classification Lookup Column Select the attribute field in the potential vegetation grid layer that contains the classified data. The classified attribute must and integer and include -9 for nodata, 1 for rangelands, 4 for dry forest, 5 for wet forest. This is a parameter of the "Lookup" tool. Field 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 25 Parameter Explanation Data Type Wetlands Feature Layer Select the wetlands feature layer that contains a classified attribute field that defines what wetlands types will be modeled. Feature Layer Expression to Select Wetlands Create an SQL statement that selects which wetlands will be used in the tool. SQL Expression Current Months Precip Select the precipitation grid layer that is for the current modeling month. This should be precipitation data for July, August, or September; either the monthly average or the 30 yr average. Raster Layer Previous Months Precip Select the precipitation grid layer that is Raster for the previous modeling month. This Layer should be precipitation data for June, July, or August; either the monthly average or the 30 yr average. Ex: if you are going to model August nutrition then use July precipitation for this input parameter. Tool properties set under the environment tab (Table 3.) Changed (if needed) before the tool is run Environment Setting Description Extent All new raster layers will be given this extent. Mask All new raster layers will be limited to this mask Snap Raster To Shifts any new raster layers to match the starting x/y of this raster. Cell Size Makes any new raster have this cell size. Default Value <Study Area Boundary Plus Buffer> <Study Area Boundary Plus Buffer> Existing Vegetation Grid Existing Vegetation Grid (30 m) Nutrition tool output file definitions (Table 4.) . All abbreviations will have your study area code prefix (****_) 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 26 Layers in the Output Workspace Folder. These layers are in final format. Output Abbreviation ****_dde_mn Description Mean dietary digestible energy for a 200-m radius circle (kcal/g). This output is one of the four needed covariates to get the habitat use index. Layers in the Temp Folder within Output Workspace Folder. These are intermediate or temporary layers. Output Abbreviation Description ****_aglands The selected agriculture land cover types that the tool will use when calculating the ag DDE values. ****_date The combined Month and Day as a decimal, constant value raster. ****_day A constant, single value raster created from the Day parameter. ****_dde4cl.img DDE classified into four nutrition categories; 1=Poor, 2=marginal, 3=good, 4=Excellent. ****_dde6cl.img DDE classified into six nutrition categories; 1=poor, 2=low-marginal, 3=high-marginal, 4=low-good, 5=high-good, 6=excellent. ****_ddetmp1 DDE values calculated by merging (or stamping) ag lands on the eq_dde raster. This is the second level of calculating DDE. ****_ddetmp2 DDE values calculated by merging (or stamping) wetlands on the ddetmp1 raster. This is the third level of calculating DDE. ****_eq_dde DDE values calculated from the PNV equations. This is the first level of calculating DDE. ****_evt The EVT values that are used in the tool. This includes only the “H” and “Ag” values from the classified attribute field. ****_lkup_pnv The PNV classified values converted to a value raster. This layer defines where the DDE equations will be applied. ****_mask The absolute, overall area where DDE will be calculated. Combines EVT and PNV but excludes NoData cells. ****_month A constant, single value raster created from the Month parameter. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 27 ****_pnv_int The PNV values that are used in the tool. This includes only the 1, 4, and 5 values from the classification attribute field. ****_wetlands The raster conversion of the wetlands.shp ****_wetlands.shp The selected wetlands that the tool will use when calculating the wetlands DDE values. Elk Habitat Use Tool Introduction The elk habitat use model predicts levels of elk use across the landscape. The model incorporates the Nutrition Tool described previously to predict elk use. This tool uses inputs previously explained for the Nutrition Tool, a digital elevation model (DEM), and a classified open roads layer to create the covariates required to calculate a habitat use index. The existing vegetation type, used in the Nutrition Tool, is also used in the Habitat Use Tool to create the forest vegetation type variable. There are seven inputs required to calculate the predicted level of elk use (five of which are the same that were described for the Nutrition Tool) (fig. 3): • mean DDE (dietary digestible energy) • mean percent slope • distance (meters) to nearest class 1 or 2 road open to public use (capped at 4000 m) • distance (meters) to nearest class 3 or 4 road open to public use (capped at 4000 m) • percent area in forest vegetation type, all created with the Habitat Use Tool 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 28 Figure 4. Elk habitat use model diagram. By using a single algorithm and these inputs, an output grid is created that represents the predicted level of use by elk - that is, the likelihood that an elk will occur in a given area. This output is an index, and the greater the value, the higher the predicted level of use. If comparisons are desired of predicted use from current conditions with predicted use under various alternatives that involve altering canopy cover (e.g., to enhance DDE levels ), the Update Canopy Cover Tool must be run prior to running the Habitat Use Tools for each alternative of interest. Using the Habitat Use Tool: Do’s and Don’ts This tool has a linked set of geoprocesses for each of the three covariates. You can run the tool with all geoprocesses at once from the Open option (which will create all three covariates and the habitat use index), or you can run each part independently using the Edit option (which creates any single covariate or all three covariates). The Edit option thus will allow you to focus on any single covariate of interest in this tool. • For example, if distance to class I and II roads is the only covariate of interest, you can choose to run only this process. You can then edit your roads feature layer (such as closing roads) and run the process again to compare outputs. You can do this without having to run the additional processes for the mean slope or other covariates, therefore saving time. • Running this tool in “Edit” mode requires advanced understanding of ModelBuilder, i.e., being able to single out the parameters needed for the covariate of interest and then running only those processes. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 29 Habitat Use Tool Parameters (Table 5) Parameter Explanation Data Type Output Workspace Folder Select the folder location you want the tool outputs to be saved in. Within this folder, a temporary "temp" folder is automatically created. Each output will be saved in the Output Workspace Folder if it's a permanent file or the temporary folder if it's an intermediate file. If you do not have overwrite processes activated (found in the Tools menu, Options, Geoprocessing Tab) you will need to create a new folder each time the tool is run. Workspace Study Area Code 4 char max Choose an arbitrary (but meaningful) four character code (alpha/numeric) that represents the analysis area the tool is being calculated for. It cannot exceed four characters nor can it begin with a number, or the tool will not run. This code will precede the name of each output layer. String Study Area Boundary Select the regional landscape study area (not buffered). Only the habitat use index output layer will be clipped to this boundary. Feature Layer Study Area Boundary Plus Buffer Select the buffered regional landscape study area. A typical buffer extends 4km beyond the study area boundary. Including the buffered area allows the tool to account for edge effects that may influence elk behavior. Output layers will be clipped to this boundary. Feature Layer Choose the Modeling Day 131 Choose the number of the day (1- 31) within the Double month of August for which you are determining nutrition. This tool was developed using date as an input covariate. Date accounts for seasonal variability. The month (August) is a preset default value. By choosing the day you can look at variability within the month of August. The Habitat Use tool was designed and tested using August input data and elk locations, therefore we limit the habitat use index output to this time period. Existing Vegetation Grid Select the existing vegetation grid that contains a forest attribute (classifies as forest or non-forest) 4/29/2013 ***DRAFT*** Raster Layer Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 Parameter Explanation 30 Data Type and a vegetation type attribute (classifies as habitat used, masked out, or agriculture lands). These two attributes will often be created by the user specifically for use in the Blue Mountains Elk Habitat Models. Expression to Select Existing Vegetation and Ag Land Types Create an SQL statement that selects which existing vegetation types the tool will model. SQL Expression These are the � habitat used� vegetation types that elk will inhabit, and the agriculture types. Here, non-habitat vegetation (such as barren lands, developed, rock/sand, water, etc.) should be excluded from model analysis. Expression to Select Ag Lands Create an SQL statement that selects the agriculture land types. SQL Expression Expression to Select Existing Forest Types Create a SQL statement that selects which existing vegetation types are forest types. A forest type is any vegetation type that has trees. This is not a structural designation (not based on canopy cover or stand height), but simply, is it a tree species? SQL Expression Canopy Cover Grid Select the existing canopy cover grid that contains canopy cover data as attributes to be used in the tool. Raster Layer August EVI Select the August EVI grid layer. EVI data typically spans a two week period (16 days) so pick the most appropriate two week span that covers the beginning or ending period of August, depending on the modeling date you pick. Raster Layer Potential Natural Vegetation Select the potential vegetation grid that contains a Raster Layer classified attribute for each vegetation zone (or series) types. The classified attribute must be an integer and include -9 for nodata, 1 for rangelands, 4 for dry forest, 5 for wet forest. Potential Vegetation Classification Lookup Column Select the attribute field in the potential vegetation grid layer that contains the classified data. The classified attribute must and integer and include -9 for nodata, 1 for rangelands, 4 for dry forest, 5 for wet forest. This is a parameter of the "Lookup" tool. Field Wetlands Feature Layer Select the wetlands feature layer that contains a Feature Layer 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 Parameter 31 Explanation Data Type classified attribute field that defines what wetlands types will be modeled. Expression to Select Wetlands Create an SQL statement that selects which wetlands will be used in the tool. SQL Expression August Precip Select the August precipitation grid layer (the current modeling month). The Habitat Use tool was designed and tested using August input data and elk locations, therefore we limit the habitat use index output to this time period. The precipitation data can either the monthly average or the 30 yr average. Raster Layer July Precip Select the July precipitation grid layer (the previous modeling month). The Habitat Use tool was designed and tested using August input data and elk locations, therefore we limit the habitat use index output to this time period. The precipitation data can either the monthly average or the 30 yr average. Raster Layer Roads Feature Layer Select the roads line feature that contains a classified attribute field that defines the 4 classes of roads that are needed for the Blue Mountains Elk Habitat Models. Feature Layer Expression to Select Roads 1 and 2 Create a SQL statement that selects open roads that are classified as 1 or 2. SQL Expression Expression to Select Roads 3 and 4 Create a SQL statement that selects open roads that are classified as 3 or 4. SQL Expression DEM Select the digital elevation grid (DEM). Units should be in meters. Raster Layer Tool properties set under the environment tab (Table 6) Changed (if needed) before the tool is run Environment Setting Description Extent All new raster layers will be given this extent. Snap Raster To Shifts any new raster layers to match the starting x/y of this raster. 4/29/2013 Default Value <Study Area Boundary Plus Boundary> Existing Vegetation Grid ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 Cell Size Mask 32 Makes any new raster have Existing Vegetation Grid (30 m) this cell size. Creates NoData values for any <Study Area Boundary Plus cell that is outside of this mask. Buffer> Habitat Use Tool output file definitions (Table 7) All abbreviations will have your study area code prefix (**** ). Layers in the Output Workspace Folder. These layers are in final format. Output Abbreviation Description ****_d_cl1_2 Distance grid from the class 1 and 2 roads, truncated at 4km. ****_d_cl1_2 Distance grid from the class 3 and 4 roads, truncated at 4km. ****_dde_mn Mean dietary digestible energy for a 200-m radius circle (kcal/g). This output is one of the four needed covariates to get the habitat use index. ****_mn_slp The mean slope grid. ****_pct_allf The percent forest grid, calculated in a 200m circle. ****_use The habitat use index. ****_use1x6 The habitat use index multiplied by 1 million. Creates a range of values that are more tangible than the raw values. Layers in the Temp Folder within Output Workspace Folder. These are intermediate or temporary layers. Output Abbreviation Description ****_aglands The selected agriculture land cover types that the tool will use when calculating the ag DDE values. ****_allfor The EVT vegetation types that were classified as a forest type. ****_Class_1_2_Roads .shp The class 1 and class 2 roads there were selected and exported as a new layer. ****_Class_3_4_Roads .shp The class 3 and class 4 roads there were selected and exported as a new layer. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 33 ****_d_cl1_2 Distance grid from the class 1 and 2 roads, not truncated. ****_d_cl3_4 Distance grid from the class 3 and 4 roads, not truncated. ****_date The combined Month and Day as a decimal, constant value raster. ****_day A constant, single value raster created from the Day parameter. ****_dde4cl.img DDE classified into four nutrition categories; 1=Poor, 2=marginal, 3=good, 4=Excellent. ****_dde6cl.img DDE classified into six nutrition categories; 1=poor, 2=low-marginal, 3=high-marginal, 4=low-good, 5=high-good, 6=excellent. ****_ddetmp1 DDE values calculated by merging (or stamping) ag lands on the eq_dde raster. This is the second level of calculating DDE. ****_ddetmp2 DDE values calculated by merging (or stamping) wetlands on the ddetmp1 raster. This is the third level of calculating DDE. ****_eq_dde DDE values calculated from the PNV equations. This is the first level of calculating DDE. ****_evt The EVT values that are used in the tool. This includes only the “H” and “Ag” values from the classified attribute field. ****_lkup_pnv The PNV classified values converted to a value raster. This layer defines where the DDE equations will be applied. ****_mask The absolute, overall area where DDE will be calculated. Combines EVT and PNV but excludes NoData cells. ****_month A constant, single value raster created from the Month parameter. ****_pnv_int The PNV values that are used in the tool. This includes only the 1, 4, and 5 values from the classification attribute field. ****_rclallf Reclassifies all forest pixels to a value of 1. ****_slp Slope raster calculated from the DEM input. ****_sum_allf Sum of the rclallf output in 200 m circles. ****_wetlands The raster equivalent of the wetlands.shp ****_wetlands.shp The selected wetlands that the tool will use when calculating the wetlands DDE values. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 34 Update Canopy Cover Tool Introduction The tool to update an existing vegetation grid can be used to meet two primary objectives: (1) to update a vegetation grid to account for canopy cover removal or growth between the date of the base vegetation layer (e.g., 2008 Landfire) and current conditions, or (2) to simulate the removal or growth of canopy cover in designated polygons (e.g., harvest areas) within a planning unit for comparison of management alternatives with current conditions. Outputs from this tool can be used as inputs to rerun the Nutrition Tool or Habitat Use Tool (see section D for details) and compare results with the original, pre-modification conditions. Dietary digestible energy will change with updates in canopy cover. To meet objective 1 we suggest using aerial photography (e.g., NAIP imagery) from the same (or similar) year for which you want to estimate nutritional conditions or habitat use and then digitize the polygons in which vegetation in the imagery differs significantly from vegetation in the grid. We describe methods to meet the second objective in the “Habitat Use Tool” section. This tool is not designed to update a vegetation layer pixel-by-pixel. Rather, it is designed to update a grid at the stand level or larger, through the use of polygons. It also assumes that all treatments (i.e., areas where values will be updated) will be applied consistently throughout each defined polygon (i.e., in every pixel). The Update Canopy Cover Tool incorporates changes in canopy cover from existing conditions to values that reflect harvest treatments, or to update a vegetation grid from a prior or later year to match the time period desired for modeling. In order to fulfill either objective, values from these thee covariates in the areas where the vegetation layer will be updated may need to be estimated before using the Update Canopy Cover Tool. If personal knowledge of the area is minimal or harvest plans for canopy cover are unavailable, calculating the mean or majority value for canopy cover within the Canopy Cover Update Polygon layer may help estimate those values. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 35 Figure 4. Complete elk habitat models diagram If you choose to estimate canopy cover values by using the mean or majority of the values, use the “Zonal Statistic as Table” tool in ArcGIS Spatial Analyst to calculate an array of basic statistics (min, max, range, mean, majority, minority, standard dev, sum, etc.) Be sure that your input grid is the canopy cover grid. This tool creates a .dbf file that contains the mean and majority value for each polygon. Those values can be used to help estimate appropriate canopy cover values to edit the attribute table as described in step 4 below (“Attribute table from existing vegetation grid”). Additional Input Data Needed for the Update Canopy Cover Tool 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 36 1. Vegetation Update Polygon layer a. This is a polygon layer that defines the exact areas where vegetation (canopy cover) will be changed. i. This change can result from harvesting or can reflect planned improvements or changes in existing vegetation grid. b. This is a layer you create. It can be a single polygon or contain multiple polygons. c. You must add 1 field to represent the new canopy cover (ex. new_CC), as a long integer data type, in the attribute table for this layer. i. This Value field is what the tool will look for when creating a grid from your polygon layer. An example study area in grey (A). Colored polygons are treatment areas to be updated. B shows the attribute table associated with the layer in A. A B Using the Update Canopy Cover Tool: Do’s and Don’ts What GIS skills are needed? 1. Able to create and modify shapefiles and attribute tables in an edit session in ArcMap. 2. Able to re-project input data. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 37 Update Canopy Cover Tool Parameters (Table 8) Parameter Explanation Data Type Output Workspace Folder Select the folder location you want the tool outputs to be saved in. Within this folder, a temporary "temp" folder is automatically created. Each output will be saved in the Output Workspace Folder if it's a permanent file or the temporary folder if it's an intermediate file. If you do not have overwrite processes activated (found in the Tools menu, Options, Geoprocessing Tab) you will need to create a new folder each time the tool is run. Workspace Study Area Code 4 char max Choose an arbitrary (but meaningful) four character code (alpha/numeric) that represents the analysis area the tool is being calculated for. It cannot exceed four characters nor can it begin with a number, or the tool will not run. This code will precede the name of each output layer. String Study Area Boundary with Buffer Select the buffered regional landscape study area. A typical buffer extends 4km beyond the study area boundary. Including the buffered area allows the tool to account for edge effects that may influence elk behavior. Output layers will be clipped to this boundary. Feature Layer Existing Canopy Cover Grid Select the existing canopy cover grid that contains canopy cover data as attributes to be used in the tool. This is the existing conditions that will be updated by this tool Raster Layer Canopy Cover Change Polygons Select the polygon layer that represents the areas within the regional landscape study area where canopy cover will be changed. This layer can be a single or multi-polygon layer. Feature Layer Convert Polygon to Raster Based On This Field Select the attribute field in the Canopy Cover Change Polygons layer that contains the new canopy cover value that you assigned. Field 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 38 Tool properties set under the environment tab (Table 9) Changed, if needed, before the tool is run Environment Setting Description Extent All new raster layers will be given this extent. Snap Raster To Shifts any new raster layers to match the starting x/y of this raster. Cell Size Makes any new raster have this cell size. Mask Creates NoData values for any cell that is outside of this mask. Default Value <Study Area Boundary> <Existing Vegetation Grid> 30 <Study Area Boundary> Update Canopy Cover Tool output file definitions (Table 10) Most abbreviations will have your study area code prefix (****_) Layer in the Output Workspace Folder. These layers are in final format. Output Abbreviation Description ****_cctemp This is the grid equivalent of the polygon layer for the areas where vegetation will be updated. ****_updatecc.img This is the final, updated vegetation grid that will be used in the subsequent tools such as the Nutrition and Habitat Use Tools. Interpretation and Summaries of Model Results Model users can summarize results from the Blue Mountains elk nutrition and habitat use models in a variety of ways. Below we describe potential methods of summarizing results from the outputs of the Nutrition and Habitat Use Tools. As described previously (Section B, “Spatial and Temporal Extents for Summarizing Model Results”), summaries of model outputs can be made at two spatial extents: (1) the regional landscape, across which the models are applied; and (2) the local landscape. Summaries can also be completed for one 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 39 time period (existing condition) as well as for different management alternatives under which potential effects of management are evaluated, and results contrasted with the existing condition. These summaries can be completed for both the regional and local landscapes. Summarizing Results from the Nutrition Model The Nutrition Tool predicts the dietary digestible energy of forage available to elk for any specified area within the Blue Mountains regional boundaries identified in figure 5. The predictions can be made for any landscape condition (e.g., existing condition or any proposed management alternatives). Results from the nutrition predictions have a direct relation to animal performance, based on the work by Cook et al. (2004). The authors grouped DDE values into four classes and described estimated levels of performance as a function of DDE for a variety of metrics, including calf mass, yearling cow mass, lactating adult cow fat percentage, pregnancy rates of yearling and adult cows, and breeding date for adult cows. For nearly all Blue Mountains landscapes, the majority of area will fall into nutritional classes below excellent or good, given that forage quality is inherently limiting to most Blue Mountains environments (Harper 1987; Cook et al., n.d. a). Accordingly, any increase in area within the good or excellent nutrition classes can potentially result in substantial benefits to elk nutrition and associated animal performance. Figure 5. The Blue Mountains elk habitat models encompass four national forests of northeastern Oregon. Table 11 below is an expansion to six classes of the four original DDE classes described in Cook et al. (2004): poor, marginal, good, and excellent. We suggest that outputs from the Blue Mountains nutrition model be summarized using these six classes, expressed as the percentage of pixels in the landscape that fall within each class (e.g., table 12). This more finely-divided set of classes allows the user to better quantify potential or real improvements in nutritional conditions in landscapes dominated by marginal or good classes. Users should not report the mean DDE value (that is, the sum of all DDE values divided by the total pixel count) for any analysis area, whether local or regional landscape, because of the high spatial variability in nutritional values. If summaries of DDE using the original four classes are desired, simply add the counts for the low-marginal and high-marginal for the “marginal class” and low-good and high-good for the “good” class. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 40 Table 11—Dietary digestible energy (DDE) for elk, assigned to six classes for better discrimination of intermediate quality habitats. Adapted from Cook et al. (2004). Class 1 2 3 4 5 6 Description Poor Low-marginal High-marginal Low-good High-good Excellent DDE <2.40 >2.40 to <2.575 >2.575 to <2.75 >2.75 to <2.825 >2.825 to <2.90 >2.90 Regional Landscape: Existing Condition and any Management Alternatives 1. Percent of the landscape (and acres, if desired) by DDE class (table 11) for existing condition and each management alternative. Note: use the raw DDE grid created by the Nutrition Tool for nutrition summaries and mapping. Table 12—Percentage area in each DDE class for the existing landscape (Existing) and based on predictions using two different management alternatives. DDE Class Existing Alternative 1 Alternative 2 1 29.8% 29.5% 28.2% 2 56.7% 54.9% 54.9% 3 7.8% 9.3% 7.6% 4 2.2% 2.1% 2.1% 5 1.9% 1.9% 1.9% 6 1.6% 2.3% 5.4% 2. Map of DDE classes across landscape. 3. Map of “ramped” (non-classified) DDE values across the regional landscape. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 41 Changes in Regional Landscape: Existing Condition Relative to each Management Alternative 4. Change in DDE classes from existing condition to various management alternatives, represented by the acres that have moved from each DDE class under the existing condition to other classes under alternatives; table 9). In addition to looking at DDE maps and the percentage of the landscape in each DDE class, we can calculate the total acreage in each class and how much of the landscape in Class 1 will be improved and moved to Class 2, 3, 4, 5 or 6 under various alternatives (Alternative 1, table 13; Alternative 2, table 14). For example, under the existing condition there is a total of 20,536 ac in DDE Class 1 (poor), but under Alternative 1 275 ac would be improved to Class 6 (excellent; table 13). Alternatively, 1,138 ac originally in Class 1 would improve to Class 6 under Alternative 2 (table 14). This type of comparison shows that DDE values actually decrease for some locations under Alternative 1 (e.g., 63 ac originally in Class 2 pre-treatment get downgraded to Class 1 under Alternative 1; table 13). Table 13—Number of existing acres (Existing) in each DDE class (1 – 6) and the number of acres that move into other DDE classes under Alternative 1. Existing 1 2 3 4 5 6 Total: 1 20261 63 1 0 1 6 20333 2 0 37758 0 0 0 0 37758 Alternative 1 3 4 0 0 1042 0 5316 0 48 1476 5 0 5 0 6416 1476 5 0 0 0 0 1293 0 1293 6 275 135 23 7 6 1111 1556 Total 20536 38998 5341 1532 1305 1122 68833 Table 14—Number of existing acres (Existing) in each DDE class (1 – 6) and the number of acres that move into other DDE classes under Alternative 2. Existing 1 2 3 4 5 6 Total: 4/29/2013 1 19398 0 0 0 0 0 19398 2 0 37758 0 0 0 0 37758 Alternative 2 3 4 0 0 0 0 5224 0 0 1476 0 0 0 0 5224 1476 5 0 0 0 0 1293 0 1293 ***DRAFT*** 6 1138 1240 117 56 11 1122 3683 Total 20536 38998 5341 1532 1305 1122 68833 Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 42 5. Map of change in DDE classes from existing condition to classes under various management alternatives (change map; can use integer values to quantify class differences or designate as +, , or no change). You can also quantify changes in DDE class for individual pixels and map these differences (e.g., DDE class under existing conditions vs. Alternative 1). If using six DDE classes, the best possible change would be 5 (i.e., moving from DDE Class 1 to Class 6. For DDE, you would not expect much negative change to occur with management treatments; however, in some situations, such as using dynamic vegetation simulation models to predict future conditions, negative changes in DDE class could occur. Local Landscape: Existing Condition and any Management Alternatives Summaries and maps of nutrition for a local landscape will be the same as those at the regional level, but with data summarized and displayed within the boundary defined as the local analysis area (see “Defining an Analysis Area” above). No new analysis is required at this level; however, percentages and other summary statistics will be different when confined to the local landscape boundary. Changes in Local Landscape Relative to each Management Alternative Summaries and maps of changes in nutrition for a local landscape will be the same as those for the region, but with data summarized and displayed within the boundary defined as the local analysis area. Summarizing Results from the Elk Habitat Use Model Predictions from the Habitat Use Tool should be referred to as "Predicted Level of Use.” The higher the values, the higher the elk use predicted for a given set of pixels within a given landscape. These predictions of use are made for each pixel within a given landscape, but are not standardized. Summing these values across a landscape can result in numbers that can be quite large, and that can vary widely, depending on the size of the landscape and the associated values of the model covariates. Appropriate interpretation of these predictions requires standard methods of summary, allowing for easy interpretation at both regional and local extents, and across time. The Habitat Use Tool predicts the distribution of elk within a given area. Thus, predictions can be used to manage elk distributions across different land ownerships and across different areas, within a given analysis area in relation to management objectives. For example, actively managing open road systems will alter elk distributions because of the strong influence of this covariate on predicted elk use (Rowland et al., n.d.) Likewise, because elk distributions are predicted to be strongly influenced by DDE levels, areas of higher use by elk reflect landscape conditions that convey positive benefits to animal performance (Cook et al. 2004). That is, the areas where animals spend more time (higher levels of predicted use) reflect portions of a given area that provide greater benefits to animal performance. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 43 In the following text we present suggestions for summarizing predictions of elk habitat use for management and interpretation. To complete the following summaries, a prerequisite is to create an XY grid for the region analyzed, with every cell (pixel) attributed for each analysis. The grid should have a format resembling the table below, with each row representing a pixel in the regional landscape: X XXXXX XXXXX XXXXX Y YYYYY YYYYY YYYYY Area 1 2 3 Pred. Use 1 xx xx xx Pred. Use 2 xx xx xx Pred. Use 3 Xx Xx Xx Landowner A B C In addition to the XY coordinates for each pixel, you may want to designate the area in which the pixel is located (e.g., if you are conducting a regional as well as local assessment, or have different treatment units), the output value from the Habitat Use Tool under different management alternatives, as well as landowner or other attributes by which you may want to summarize your data. Remember that no data from the buffer should be included in summaries of predicted use by elk. Regional Landscape: Existing Condition and any Management Alternatives 1. Map of predicted levels of use, using raw use values placed into four to ten equal-area classes (“quantiles” in ArcMap). Run the tool across the landscape for the existing condition and other management alternatives of interest, which yields “raw” values of predicted use for all pixels in the landscape. These maps will demonstrate distribution of elk across the landscape. The number of prediction classes chosen is somewhat subjective and depends on the data at hand. With too few classes, changes in predicted use between alternatives can be difficult to depict in a map; however, with too many classes, it can be difficult to distinguish the different values on the map. If changes are not obvious when comparing between existing conditions and an alternative, try increasing the number of classes displayed. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 44 Predicted levels of use by elk for the existing regional landscape (Existing), and under three management alternatives. Predictions of levels of elk use are separated into five equal-area classes for each map. 2. Charts of predicted use by elk . Run the tool as above across the region (no. 1). Sum the raw predicted levels of use for the landscape under existing conditions as well as any other management alternatives of interest to compare differences across management alternatives. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 45 Summed raw values of predicted level of elk use for the regional landscape and two local landscapes under existing conditions and three treatment alternatives. Sum of Predicted Level of Use 180 160 Sum of Use 140 120 Existing 100 80 Alternative 1 60 Alternative 2 40 Alternative 3 20 0 Regional Local Local Landscape Landscape 1Landscape 2 3. Maps of the input covariate grids for the Habitat Use Tool, i.e., percent area in forested vegetation, distance to nearest class 1 or 2 or class 3 or 4 open road, mean slope, and mean DDE. Examination of the input grids can help in understanding predicted patterns of elk use. For example, if predicted use is relatively low in one portion of the landscape, but predicted DDE levels are high, looking at the mean slope, and roads grids can help explain the patterns of predicted use seen on the maps generated in process no. 1 above. 4. Summarize predicted level of elk use within the regional landscape by landowner or other categories of interest . Sum the raw predicted levels of elk use for the entire regional landscape and for other areas of interest in the landscape, for existing condition or other management alternatives of interest. For example, dividing the summed values for a particular local treatment area by the summed values for the entire regional landscape and multiplying by 100 reveals what percentage of total predicted use occurs within the local landscape. Similarly, one could partition the region by land ownership and sum the values for each landowner, divide these sums by the summed value for the entire landscape, and multiply by 100. This will demonstrate relative elk use among ownerships. You can also compare these percentages to the actual percentage of an area occupied by each landowner to see if elk use is occurring in proportion to the “available” land managed by each landowner. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 46 Percentage of predicted levels of use by landowner within an example regional landscape. Changes in Regional Landscape: Existing Condition Relative to each Management Alternative 5. Map of predicted levels of use, using raw use values placed in four to 10 equal-area classes for Alternative 2 or multiple alternatives (as in no. 1 above), but making comparisons based on the classes for the existing condition. In some situations it can be difficult to see differences among maps displaying equal-area classes. In addition, habitat enhancement may result in a much higher level of use in some areas, which may not be evident when each map is broken down into five equal area classes (e.g., Existing vs. Alternative 2). A clearer picture may be obtained by creating maps and tables describing the landscape using the same class breakpoints as developed for the Existing map. For example, the breakpoints for the Existing map in figure 11 are presented in table 15, along with the percentage of the landscape in each class under the existing conditions and Alternatives 1 and 2. Table 15—Five equal-area prediction classes for elk habitat use based on the existing regional landscape (Existing), and the percentage of the landscape in each class for the existing regional landscape and under three management alternatives. Prediction Predicted Level Percentage of Study Area Alternative Alternative Alternative Class of Use Existing 1 2 3 Low <0.0094 20.0% 20.7% 19.3% 18.7% Medium-low 0.0094 to 0.0165 20.0% 19.6% 18.5% 19.2% Medium 0.0166 to 0.0270 20.0% 19.6% 18.9% 19.3% Medium-high 0.0271 to 0.0501 20.0% 21.1% 20.7% 21.1% High >0.0501 20.0% 19.1% 22.6% 21.8% 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 47 Predicted levels of use by elk for the existing regional landscape (Existing), and under three management alternatives. In this map, the breakpoints created for the Existing condition were used to classify each of the subsequent management alternative maps. Predictions of levels of elk use are separated into five equal-area classes for each map. 6. Summarize the percentage of the landscape in each of the classes based on original breakpoints developed for existing condition (table 15); see previous explanation. 7. Map areas where predicted level of use increased, decreased, or showed no change. Similar to process no. 5 for DDE above, changes in predicted use from an existing condition to other management alternatives can be calculated on a pixel-by-pixel basis and mapped in simple categories of negative, positive, or no change. This is an intensive GIS process, requiring these steps: (1) Predicted Use Alternative 1 – Predicted Use Existing Condition; (2) reclass differences into three groups (<0, 0, >0); (3) extract values, e.g., Sample tool, by XY points into Access; and (4) summarize in Access and report back to Excel for bar charts. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 48 Areas of negative, positive, or no change in predicted level of elk use for three treatments compared to the existing condition (not shown). Example of the percentage of an analysis area categorized by negative, no, or positive change in relation to existing conditions for a regional landscape and two local landscapes for Management Alternative 2. % Change from Existing Conditions 110.2 115 100 % change 85 70 55 25 -5 4/29/2013 Alternative 2 31.9 26.0 26.0 40 10 Alternative 1 43.9 0.0 8.2 8.8 Regional Landscape Alternative 3 -1.5 Local Landscape 1 Local Landscape 2 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 49 8. Summarize % change in predicted elk use from existing condition to other treatments. For this analysis, divide the sum of the raw predicted level of use for the regional landscape under a certain management alternative by the sum of the raw predictions for the existing condition and multiply by 100. This analysis quantifies the benefits of various management alternatives for a landscape (or local area). Percentage of change in predicted level of elk use under three management alternatives, compared to the existing conditions, for the regional landscape and two local landscapes. % Area % Change due to Alternative 2 80 70 60 50 40 30 20 10 0 67 62 40 38 Negative Change 24 9 Region 45 16 0 No Change Positive Change Local Local Landscape 1 Landscape 2 Change from Existing Conditions 9. Table of acres moved, by class of predicted elk use, from existing conditions to other management alternatives (table 16). Similar to our calculations of DDE class and how many acres from each class experienced an improvement or decline in DDE predictions under Alternative 2 (table 14), we can calculate the total acres in Predicted Level of Use Class 1 (Low) (as an example) in the Existing map that improved to the Medium-low, Medium, Medium-high and High prediction classes under various alternatives. Table 16—Number of existing acres in each class of Predicted Elk Use and the number of acres that move into other prediction classes under Alternative 1. Existing Low 4/29/2013 Low 12967 Mediumlow 618 Alternative 1 Medium 125 Mediumhigh 40 ***DRAFT*** High 17 Total 13767 Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 Medium-low Medium Medium-high High Total: 814 372 63 0 14215 11758 552 520 34 13483 50 719 11466 628 535 13473 284 1082 11856 1270 14531 192 295 700 11927 13131 13767 13766 13766 13767 68833 Local Landscape: Existing Condition and any Management Alternatives Summaries of predicted level of use by elk for the local landscape can be created by clipping the outputs from the tool run for the region and displaying results in the local area, per instructions for the regional analyses. However, the Habitat Use Tool is not to be re-applied and run within this smaller boundary. Changes in Local Landscape: Existing Condition Relative to each Management Alternative As above, changes in predicted use by elk in the local landscape can be summarized within the local area boundary using methods described for regional analyses. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 51 ArcGIS SQL, Field Calculator, and Raster Calculator Tips and Tricks SQL Structured Query Language (SQL) is a set of defined expressions and syntax used to query and manipulate data. Syntax refers to correct punctuation using quotes, parentheses, commas, etc. and is sensitive to type of data (dataset vs. geodatabase) For the purposes of our models, SQL refers to a selection query that selects specific parts of a feature or raster layer in order to perform a model process. The following information is specific to this type of data. The basic form for SQL has three parts: 1) The field (attribute field that is being selected from) 2) The operator 3) The string (the specific attribute codes being selected) Ex: “Roads” = “open”, or “Roads” = 1. Both are selecting the same attribute, where: 1) “Roads” is the attribute field name, always enclosed in double quotes; 2) = is the operator; 3) ‘Open’ or 1 is the specific attribute value or code that we want to select for model processing. Here, text attributes are enclosed in single quotes, but numbers do not require any quotes. Often there are several different expressions that will result in the same outcome: When the purpose is to: Select a single attribute value, e.g., select open roads or select veg types designated as habitat Expression 1 Expression 2 Expression 3 “Roads”=’open’ (This uses a text data type, select open roads) “Habitat” = ‘H’ “Roads”=1 (This uses a number data type, select open roads) “Habitat” In (‘H’) Not “Roads” = ‘closed’ (Select all roads not equal to closed) (Select attribute ‘H’) (Select attributes in the list ‘H’) Select multiple attribute codes, e.g., select veg types designated as habitat plus ag land types “Habitat” = ‘H’ OR “Habitat”=’A’ “Habitat” In (‘H’, ‘AG’) Not "Habitat" In ('AG’,'M’) (Select all attributes not including’AG’ or ‘M’) “Habitat” <> ‘M’ (Select attribute ‘H’ and select attribute ‘A’) (Select attributes in the list ‘H’ and ‘AG’) (Select all attributes not including ‘M’) 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 52 SQL operators (copied from the Arc Help files) Operator Description Arithmetic operators You use an arithmetic operator to add, subtract, multiply, and divide numeric values * Arithmetic operator for multiplication / Arithmetic operator for division + Arithmetic operator for addition - Arithmetic operator for subtraction Comparison operators You use comparison operators to compare one expression to another < Less than. It can be used with strings (comparison is based on alphabetical order), numbers, and dates. <= Less than or equal to. It can be used with strings (comparison is based on alphabetical order), numbers, and dates. <> Not equal to. It can be used with strings (comparison is based on alphabetical order), numbers, and dates. > Greater than. It can be used with strings (comparison is based on alphabetical order), numbers, and dates. >= Greater than or equal to. It can be used with strings (comparison is based on alphabetical order), numbers, and dates. For example, this query selects all the cities with names starting with the letters M to Z: "CITY_NAME" >= 'M' Selects a record if it has a value greater than or equal to x and less than or equal to y. [NOT] BETWEEN When preceded by NOT, it selects a record if it has a value outside the specified range. For example, this expression selects all records with a value greater than or x AND y equal to 1 and less than or equal to 10: 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 53 "OBJECTID" BETWEEN 1 AND 10 This is the equivalent of the following expression: "OBJECTID" >= 1 AND OBJECTID <= 10 However, the expression with BETWEEN provides better performance if you're querying an indexed field. Returns TRUE if the subquery returns at least one record; otherwise, it returns FALSE. For example, this expression returns TRUE if the OBJECTID field contains a value of 50: [NOT] EXISTS EXISTS (SELECT * FROM parcels WHERE "OBJECTID" = 50) EXISTS is supported in file, personal, and ArcSDE geodatabases only. Selects a record if it has one of several strings or values in a field. When preceded by NOT, it selects a record if it doesn't have one of several strings or values in a field. For example, this expression searches for four different state names: [NOT] IN "STATE_NAME" IN ('Alabama', 'Alaska', 'California', 'Florida') For file, personal, and ArcSDE geodatabases, this operator can also be applied to a subquery: "STATE_NAME" IN (SELECT "STATE_NAME" FROM states WHERE "POP" > 5000000) IS [NOT] NULL Selects a record if it has a null value for the specified field. When NULL is preceded by NOT, it selects a record if it has any value for the specified field. For example, this expression selects all records with a null value for population: "POPULATION" IS NULL Use the LIKE operator (instead of the = operator) with wildcards to build a partial string search. For example, this expression selects Mississippi and Missouri among USA state names: "STATE_NAME" LIKE 'Miss%' x [NOT] LIKE y [ESCAPE 'escape- The percent symbol (%) means that anything is acceptable in its place: one character, character'] a hundred characters, or no character. Alternatively, if you want to search with a wildcard that represents one character, use and underscore (_). For example, this expression finds Catherine Smith and Katherine Smith: "OWNER_NAME" LIKE '_atherine Smith' 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 54 The percent symbol and underscore wildcards work for any file-based data or multiuser geodatabase data. LIKE works with character data on both sides of the expression. If you need to access noncharacter data, use the CAST function. For example, this query returns numbers that begin with 8 from the integer field SCORE_INT: CAST ("SCORE_INT" AS VARCHAR) LIKE '8%' To include the percent symbol or underscore in your search string, use the ESCAPE keyword to designate another character as the escape character, which in turn indicates that a real percent sign or underscore immediately follows. For example, this expression returns any string containing 10%, such as 10% DISCOUNT or A10%: "AMOUNT" LIKE '%10$%%' ESCAPE '$' The wildcards you use to query personal geodatabases are asterisk (*) for any number of characters and question mark (?) for one character. The pound sign (#) is also used as a wildcard to match a single digit (numeric value). For example, this query returns parcel numbers A1, A2, and so on, from a personal geodatabase: [PARCEL_NUMBER] LIKE 'A#' Logical operators AND Combines two conditions together and selects a record if both conditions are true. For example, the following expression selects any house with more than 1,500 square feet and a garage for more than two cars: "AREA" > 1500 AND "GARAGE" > 2 OR Combines two conditions together and selects a record if at least one condition is true. For example, the following expression selects any house with more than 1,500 square feet or a garage for more than two cars: "AREA" > 1500 OR "GARAGE" > 2 NOT Selects a record if it doesn't match the expression. For example, the following expression selects all states but California: NOT "STATE_NAME" = 'California' 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 55 Field Calculator Used when you are editing specific attributes in an attribute table. 1. Open Attribute Table 2. Select the attribute ROW(S) you want to update or edit. If no rows are selected, the edits will apply to all of the rows. 3. Select the attribute COLUMN that you want to update or edit. The column does not have to be selected but you must make sure that you right click on the column you want to edit when you open the Field Calculator. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 56 4. Right click on the selected column and chose Field Calculator. A sub window will open: 5. Enter your expression and Click OK when finished a. Must use double quotes if you are entering text, no quotes if you are enter numbers, parentheses for field names. Notice the Field name MODEL and the Operator = are already preset when using the Field Calculator. You only need to finish out the expression you desire. b. By entering “H” you will change the current classification of “AG” to “H” in only the two selected rows for this example. c. To copy data from another field (ex: a table with the classifications for EVT was joined to the EVT grid and you want to copy the classification field to your grid) you would then enter the field name [field] in the field calculator window enclosed by square brackets (double click the correct field from the Fields: text box). i. Be aware of any selected rows. Field Calculator will update the entire column across all rows unless there are selected rows, in which case only those selected rows will be updated. Raster Calculator 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 57 Used when you want to edit an entire raster (ex: convert precipitation grid into millimeters) or use the raster in an expression. This tool is found in the Spatial Analyst Toolbox, Map Algebra toolset, Raster Calculator tool. The yellow diamonds on the left are the raster layers available for use (gathered from the current map project you are working in). Once again, syntax is very important and can foul up a complex expression very easily if you’re not careful. The Tool Help is a good aid to become familiar with. Example: Convert precip to millimeters. To begin, 1. In ArcMap, Open the Raster Calculator tool 2. Double click on the raster layer you wish to edit (yellow diamond). This will begin the expression for you in the text box. Notice the double quotes put around the raster name. 3. Click on the divide operator 4. Type in 100 (or use the key punch pad on the tool) 5. Be sure to set your Output Raster (the default will be used if you don’t change it) 6. When saving and creating rasters there is some flexibility with the type of raster you can use (grid, img, tif, etc). We designed the elk models to create standard ESRI grids, meaning they 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 58 don’t have any file extensions. In this example I chose an imagine file (simply type .img at the end of the file name in the output raster parameter). Imagine files are not subject to name length restrictions like grids are (grids can only have 13 characters in their name, imagine rasters are not limited), and thus can be more flexible. Literature Cited Chesson, J. 1978. Measuring preference in selective predation. Ecology. 59: 211-215. Cook, J.G.; Cook, R.C.; Davis, R.W.; Irwin, L.L. [N.d.]. a. Relations among habitat characteristics, plant succession, and nutrition of foraging elk during summer and autumn in temperate forests of the Pacific Northwest. [La Grande, OR]: [National Council for Air and Stream Improvement]; final report. Cook, J.G.; Cook, R.C.; Davis, R. [et al.]. [N.d.]. b. Development and description of nutrition mapping algorithm. In: Rowland, M. M.; Wisdom, M.J.; Cook, J.G. [et al.]. Nutrition and habitat use models for landscape-level research and management of elk in Western Oregon and Washington. Wildlife Monographs. Chapter 2. Cook, J.G.; Johnson, B.K.; Cook, R.C. [et al.]. 2004. Effects of summer-autumn nutrition and parturition date on reproduction and survival of elk. Wildlife Monographs. No. 155. Cook, R.C.; Cook, J.G.; Vales, D.J. [et al.]. [In press]. Regional and seasonal patterns of nutritional condition and reproduction in elk. Wildlife Monographs. Franklin, J.F.; Dyrness, T.C. 1988. Natural vegetation of Oregon and Washington. Revised ed. Corvallis, OR: Oregon State University Press. 452 p. Harper, J.A. 1987. Ecology and management of Roosevelt elk in Oregon. Report. Portland, OR: Oregon Department of Fish and Wildlife. Hutchins, N.R. 2006. Diet, nutrition, and reproductive success of Roosevelt elk in managed forests of the Olympic Peninsula, Washington. Arcata, CA: Humbolt State University. 104 p. M.S. thesis. Ivlev, V.S. 1961. Experimental ecology of the feeding of fishes. New Haven , CT: Yale University Press. 302 p. Manly, B.; McDonald, L.; Thomas, D. 1993. Resource selection by animals. New York: Chapman and Hall. 192 p. Rowland, M. M.; Wisdom, M.J.; Cook, J.G. [et al.]. [N.d.]. Nutrition and habitat use models for landscapelevel research and management of elk in Western Oregon and Washington. Wildlife Monographs. 4/29/2013 ***DRAFT*** Version 1.0 Draft Blue Mountains Elk Model User Guidelines, v. 1.0 English Equivalents When you know: Centimeters (cm) Meters (m) Hectares (ha) Kilometers (km) Grams (g) Kilograms (kg) 4/29/2013 Multiply by: .394 3.28 2.47 .621 .0352 2.205 ***DRAFT*** 59 To find: Inches Feet Acres Miles Ounces Pounds Version 1.0