Chapter 03 Lecture Outline Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Cytogenetics • The field of genetics that involves the microscopic examination of chromosomes • A cytogeneticist typically examines the chromosomal composition of a particular cell or organism – This allows the detection of individuals with abnormal chromosome number or structure – This also provides a way to distinguish between two closely-related species Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-9 Cytogenetics • Animal cells are of two types – Somatic cells • Body cells, other than gametes – Blood cells, for example – Germ cells • Gametes – Sperm and egg cells • Figure 3.2 shows the general procedure for viewing chromosomes from a human (somatic) cell Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-10 Cytogenetics • In a cytogenetics laboratory, the microscopes are equipped with a camera • Microscopic images of chromosomes can now be visualized using a computer • There, chromosomes can be organized in a standard way, usually from largest to smallest • A karyotype is an organized representation of the chromosomes within a cell • Refer to Figure 3.2(c) Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-12 A karyotype of a diploid human cell 1 6 7 13 19 2 3 8 14 9 15 20 4 5 10 11 16 17 21 12 18 22 XY © Leonard Lessin/Peter Arnold 11 µm (c) For a diploid human cell, two complete sets of chromosomes from! a single cell constitute a karyotype of that cell. Figure 3.2 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-13 Eukaryotic Chromosomes Are Inherited in Sets • Most eukaryotic species are diploid – Have two sets of chromosomes • For example – Humans • 46 total chromosomes (23 per set) – Dogs • 78 total chromosomes (39 per set) – Fruit fly • 8 total chromosomes (4 per set) Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-14 Eukaryotic Chromosomes Are Inherited in Sets • Members of a pair of chromosomes are called homologs – The two homologs form a homologous pair • The two chromosomes in a homologous pair – Are nearly identical in size – Have the same banding pattern and centromere location – Have the same genes • But not necessarily the same alleles Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-15 Eukaryotic Chromosomes Are Inherited in Sets • The DNA sequences on homologous chromosomes are also very similar – There is usually less than 1% difference between homologs • Nevertheless, these slight differences in DNA sequence provide the allelic differences in genes – Eye color gene • Blue allele vs. brown allele Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-16 Eukaryotic Chromosomes Are Inherited in Sets • The sex chromosomes (X and Y) are not homologous – They differ in size and genetic composition – However, they do have short regions of homology • Figure 3.3 considers two homologous chromosomes labeled with 3 different genes Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-17 The physical location of a gene on a chromosome is called its locus. Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Gene loci (location) Figure 3.3 A b c A B c Homologous" pair of" chromosomes Genotype: AA Bb Homozygous" Heterozygous for the" dominant" allele cc Homozygous" for the" recessive" allele 3-18 3.2 CELLULAR DIVISION • One purpose of cell division is asexual reproduction – This is the means by which some unicellular organisms produce new individuals – Examples • Bacteria • Amoeba • Yeast – Saccharomyces cerevisiae (Baker s yeast) Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-19 3.2 CELLULAR DIVISION • A second important reason for cell division is multicellularity – Plants, animals and certain fungi are derived from a single cell that has undergone repeated cell divisions – For example • Humans start out as a single fertilized egg • End up as an adult with several trillion cells Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-20 MITOSIS • Cell division in eukaryotes requires a replication and sorting process that is more complicated than simple binary fission • Eukaryotic cells that are destined to divide progress through a series of stages known as the cell cycle – Refer to Figure 3.5 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-24 Figure 3.5 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Interphase Mother cell S Synthesis Chromosome Nucleolus e G2 Gap 2 ase G0 Metaph Gap 1 M Mitosis Anapha s G1 (Nondividing cell) Two" daughter" cells 3-25 MITOSIS • In actively dividing cells, G1 (Gap 1), S and G2 are collectively know as interphase • A cell may remain for long periods of time in the G0 phase – A cell in this phase is in a quiescent state and has • Either postponed progression through the cell cycle • Or made the decision to never divide again – Terminally differentiated cells (e.g. nerve cells) Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-26 MITOSIS • During the G1 phase, a cell prepares to divide • The cell reaches a restriction point and is committed on a pathway to cell division • Then the cell advances to the S phase, where chromosomes are replicated – The two copies of a replicated chromosome are termed chromatids – They are joined at the centromere to form a pair of sister chromatids Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-27 Figure 3.6 (b) Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. A pair of sister chromatids Centromere" (DNA that is" hidden beneath" the kinetochore" proteins) One" chromatid Kinetochore" (proteins attached" to the centromere) One" chromatid (b) Schematic drawing of sister chromatids 3-28 • Note that at the end of S phase, a cell has twice as many chromatids as there are chromosomes in the G1 phase – A human cell for example has • 46 distinct chromosomes in G1 phase • 46 pairs of sister chromatids in S phase • Therefore the term chromosome is relative – In G1 and late in the M phase, it refers to the equivalent of one chromatid – In G2 and early in the M phase, it refers to a pair of sister chromatids Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-29 • During the G2 phase, the cell accumulates the materials that are necessary for nuclear and cell division • It then progresses into the M phase of the cycle where mitosis occurs • The primary purpose of mitosis is to distribute the replicated chromosomes to the two daughter cells – In humans for example, • The 46 pairs of sister chromatids are separated and sorted • Each daughter cell receives the same complement of chromosomes • Each daughter cell thus receives 46 chromosomes Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-30 • Mitosis was first observed microscopically in the 1870s by the German biologist, Walter Flemming – He coined the term mitosis • From the Greek mitos, meaning thread • The process of mitosis is shown in Figure 3.8 • The original mother cell is diploid (2n) – It contains a total of six chromosomes – Three per set (n = 3) • One set is shown in blue and the homologous set in red Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-31 • Mitosis is subdivided into five phases – Prophase – Prometaphase – Metaphase – Anaphase – Telophase • Following are the stages of mitosis from Figure 3.8 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-32 3.3 SEXUAL REPRODUCTION • Sexual reproduction is the most common way for eukaryotic organisms to produce offspring – Parents make gametes with half the amount of genetic material • These gametes fuse with each other during fertilization to begin the life of a new organism • The process of forming gametes is called gametogenesis Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-43 • Some simple eukaryotic species are isogamous – They produce gametes that are morphologically similar • Example: Many species of fungi and algae • Most eukaryotic species are heterogamous – These produce gametes that are morphologically different • Sperm cells (male gametes) – Relatively small and mobile • Egg cell or ovum (female gametes) – Usually large and nonmotile – Stores a large amount of nutrients (animal species) Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-44 • Gametes are typically haploid – They contain a single set of chromosomes • Gametes are 1n, while diploid cells are 2n – A diploid human cell contains 46 chromosomes – A human gamete only contains 23 chromosomes • During meiosis, haploid cells are produced from diploid cells – Thus, the chromosomes must be correctly sorted and distributed to reduce the chromosome number to half its original value • In humans, for example, a gamete must receive one chromosome from each of the 23 pairs Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-45 MEIOSIS • Like mitosis, meiosis begins after a cell has progressed through interphase of the cell cycle • Unlike mitosis, meiosis involves two successive divisions – These are termed Meiosis I and Meiosis II – Each meiotic division is subdivided into • • • • • Prophase Prometaphase Metaphase Anaphase Telophase Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-46 MEIOSIS • Prophase I is further subdivided into five stages known as – Leptotene – Zygotene – Pachytene – Diplotene – Diakinesis – Refer to Figure 3.10 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-47 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. STAGES OF PROPHASE OF MEIOSIS I LEPTOTENE Nuclear" membrane ZYGOTENE PACHYTENE DIPLOTENE Bivalent" forming Chiasma DIAKINESIS Nuclear membrane" fragmenting tetrad Synaptonemal" complex forming Replicated chromosomes" condense. Synapsis begins. A bivalent has formed and" crossing over has occurred. Synaptonemal complex" dissociates. A physical exchange of chromosome pieces End of prophase I Figure 3.10 3-48 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. The Synaptonemal Complex Synaptonemal complex • Formed between homologous chromosomes • May not be required for pairing • Precise role not clearly understood Bound to chromosomal DNA of homologous chromatids Figure 3.11 Lateral " Central " element" element" Chromatid Transverse " filament" Provides link between lateral elements 3-49 Figure 3.12 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Spindle apparatus complete Chromatids attached via kinetochore microtubules MEIOSIS I Centrosomes with centrioles Mitotic spindle Sister" chromatids Bivalent Synapsis of" homologous" chromatids and" crossing over EARLY PROPHASE LATE PROPHASE Nuclear" membrane" fragmenting PROMETAPHASE Cleavage" furrow Metaphase" plate METAPHASE ANAPHASE TELOPHASE AND CYTOKINESIS MEIOSIS II Four haploid daughter cells PROPHASE PROMETAPHASE METAPHASE ANAPHASE TELOPHASE AND CYTOKINESIS 3-50 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • Bivalents are organized along the metaphase plate in Meiosis I Metaphase" plate – Pairs of sister chromatids are aligned in a double row, rather than a single row (as in mitosis) Figure 3.12 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. The arrangement is random with regard to the (blue and red) homologs Kinetochore Furthermore n One pair of sister chromatids is linked to one of the poles n And the homologous pair is Figure 3.13 linked to the opposite pole n n 3-51 The two pairs of sister chromatids separate from each other However, the connection that holds sister chromatids together does not break Sister chromatids reach their respective poles and decondense Nuclear envelope reforms to produce two separate nuclei Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Cleavage" furrow Metaphase" plate METAPHASE Figure 3.12 ANAPHASE TELOPHASE AND CYTOKINESIS Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-52 • Meiosis I is followed by cytokinesis and then meiosis II • The sorting events that occur during meiosis II are similar to those that occur during mitosis • However the starting point is different – For a diploid organism with six chromosomes • Mitosis begins with 12 chromatids joined as six pairs of sister chromatids • Meiosis II begins with 6 chromatids joined as three pairs of sister chromatids Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-53 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Four haploid daughter cells PROPHASE PROMETAPHASE METAPHASE ANAPHASE TELOPHASE AND CYTOKINESIS Figure 3.12 3-54 • Mitosis vs Meiosis – Mitosis produces two diploid daughter cells – Meiosis produces four haploid daughter cells – Mitosis produces daughter cells that are genetically identical – Meiosis produces daughter cells that are not genetically identical • The daughter cells contain only one homologous chromosome from each pair • The daughter cells contain many different combinations of the single homologs Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-55 Spermatogenesis • The production of sperm • In male animals, it occurs in the testes • A diploid spermatogonial cell divides mitotically to produce two cells – One remains a spermatogonial cell – The other becomes a primary spermatocyte • The primary spermatocyte progresses through meiosis I and II – Refer to Figure 3.14a Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-56 Meiois I yields two haploid secondary spermatocytes Each spermatid matures into a haploid sperm cell Meiois II yields four haploid spermatids Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. MEIOSIS I MEIOSIS II Primary" spermatocyte" (diploid) Spermatids (a) Spermatogenesis Sperm cells" (haploid) Figure 3.14 (a) 3-57 • The structure of a sperm includes Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. – A long flagellum – A head • The head contains a haploid nucleus – Capped by the acrosome The acrosome contains digestive enzymes - Enable the sperm to penetrate the protective layers of the egg n In human males, spermatogenesis is a continuous process n Sperm cells" (haploid) A mature human male produces several hundred million sperm per day Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-58 Oogenesis • The production of egg cells • In female animals, it occurs in the ovaries • Early in development, diploid oogonia produce diploid primary oocytes – In humans, for example, about 1 million primary oocytes per ovary are produced before birth Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-59 • The primary oocytes initiate meiosis I • However, they enter into a dormant phase – They are arrested in prophase I until the female becomes sexually mature • At puberty, primary oocytes are periodically activated to progress through meiosis I – In humans, one oocyte per month is activated • The division in meiosis I is asymmetric producing two haploid cells of unequal size – A large secondary oocyte – A small polar body Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-60 • The secondary oocyte enters meiosis II, but is arrested at metaphase II • It is released into the oviduct – An event called ovulation • If the secondary oocyte is fertilized – Meiosis II is completed – A haploid egg and a second polar body are produced • The haploid egg and sperm nuclei then fuse to create the diploid nucleus of a new individual • Note that only one of the four cells produced in this meiosis becomes an egg • Refer to Figure 3.14b Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-61 Unlike spermatogenesis, the divisions in oogenesis are asymmetric Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Secondary oocyte Second polar body Primary" oocyte" (diploid) Egg cell" (haploid) First polar body (b) Oogenesis Figure 3.14 (b) Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-62 • The chromosome theory of inheritance is based on a few fundamental principles – 1. Chromosomes contain the genetic material – 2. Chromosomes are replicated and passed from parent to offspring – 3. The nuclei of most eukaryotic cells contain chromosomes that are found in homologous pairs, they are diploid • During meiosis, each homologue segregates into one of the two daughter nuclei – 4. During the formation of gametes, different types of (nonhomologous) chromosomes segregate independently – 5. Each parent contributes one set of chromosomes to its offspring • The sets are functionally equivalent – Each carries a full complement of genes Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-75 • The chromosome theory of inheritance allows us to see the relationship between Mendel s laws and chromosome transmission – Mendel s law of segregation can be explained by the homologous pairing and segregation of chromosomes during meiosis • Refer to Figure 3.16 – Mendel s law of independent assortment can be explained by the relative behavior of different (nonhomologous) chromosomes during meiosis • Refer to Figure 3.17 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-76 Sex Determination • In many animal species, chromosomes play a role in sex determination • Refer to Figure 3.18 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-79 • Humans have 46 chromosomes – 44 autosomes – 2 sex chromosomes • Males contain one X and one Y chromosome – They are termed heterogametic • Females have two X chromosomes – They are termed homogametic • The Y chromosome determines maleness Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 44 + XY (a) X–Y system in mammals" 44 + XX 3-80 • In some insects, – Males are XO and females are XX • In other insects (fruit fly, for example) – Males are XY and females are XX • The Y chromosome does not determines maleness • Rather, it is the ratio between the X chromosomes and the number of sets of autosomes (X/A) – If X/A = 0.5, the fly becomes a male – If X/A = 1.0, the fly becomes a female Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 22 + X 22 + XX (b) The X–0 system in certain insects" 3-81 • The sex chromosomes are designated Z and W to distinguish them from the X and Y chromosomes of mammals • Males contain two Z chromosomes – Hence, they are homogametic • Females have one Z and one W chromosome – Hence, they are heterogametic Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 76 + ZZ (c) The Z–W system in birds! 76 + ZW and some fish 3-82 • Males are known as the drones – They are haploid – Produced from unfertilized haploid eggs • Females include the worker bees and queen bees – They are diploid – Produced from fertilized eggs Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 16 haploid 32 diploid (d) The haplodiploid system in bees! 3-83 Morgan s Experiment • The chromosome theory of inheritance was confirmed through studies carried out by Thomas Hunt Morgan • Morgan tried to induce mutations in the fruit fly Drosophila melanogaster – Treatments included • Rearing in the dark • X-rays • Radium Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-84 • After 2 years, Morgan finally obtained an interesting result – A male fruit fly with white eyes rather than the normal red eyes • Morgan reasoned that this white eyed male must have arisen from a new mutation that converted a red-eyed allele into a white-eyed allele • Morgan followed Mendel s approach in studying the inheritance of this white-eyed trait – He made crosses then analyzed their outcome quantitatively Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-85 The Hypothesis – A quantitative analysis of genetic crosses may reveal the inheritance pattern for the white eye allele Testing the Hypothesis n Refer to Figure 3.19 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-86 Figure 3.19 Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Conceptual level Experimental level XwY 1. Cross the white-eyed male to a true-breeding red-eyed female. Xw+Xw+ x x 2. Record the results of the F1 generation. This involves noting the eye color and sexes of many offspring. Xw+Y male offspring and Xw+Xw female offspring, both with red eyes Xw+Y x Xw+Xw x F1 generation 1 Xw+Y : 1 XwY : 1 Xw+Xw+ : Xw+Xw 1 red-eyed male : 1 white-eyed male : 2 red-eyed femles 3. Cross F1 offspring with each other to obtain F2 offspring. Also record the eye color and sex of the F2 offspring. F2 generation 4. In a separate experiment, perform a testcross between a white-eyed male and a red-eyed female from the F1 generation. Record the results. XwY x x Xw+Xw From F1 generation + + 1 Xw+Y : 1 XwY : 1 Xw+Xw : XwXw 1 red-eyed male : 1 white-eyed male : 1 red-eyed femles : 1 red-eyed femles 3-87 The Data Cross Results Original white eyed-male F1 generation: to red-eyed females All red-eyed flies F1 male to F1 female F2 generation: 2,459 red-eyed females 1,011 red-eyed males 0 white eyed-females 782 white-eyed males Test Cross Results White-eyed male to F1 female 129 red-eyed females 132 red-eyed males 88 white eyed-females 86 white-eyed males Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-88 Interpreting the Data n The first cross yielded NO white-eyed females in the F2 generation n n These results indicate that the eye color alleles are located on the X chromosome Genes that are physically located on the X chromosome are called X-linked genes or Xlinked alleles Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-89 n A Punnett square predicts the absence of white-eyed females in the F2 generation w + F 1 male is X Y + F 1 female is X w X w Male gametes X X X w w w + + X w Y + X w + Y + Red, female Red, male X w + Xw Xw Y Xw Red, female White, male Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 3-90 n Note: The experimental ratio of red eyes to white eyes in the F2 generation is (2,459 + 1,011):782 n This ~ 4.4:1 ratio deviated significantly from the predicted 3:1 ratio n How can the lower-than-expected number of white-eyed flies be explained? n n Decreased survival of white-eyed flies Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-91 n The testcross resulted in red-eyed females and males, and white-eyed females and males, in approximately equal numbers n This is consistent with an X-linked pattern of inheritance Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Testcross: Male is Xw Y + F1 female is Xw Xw Male gametes Xw Y + Xw Xw Xw + Xw Y + Red, female Xw Xw Red, male Xw Y Xw White, female White, male 3-92 n Note: The observed data of the testcross are 129:132:88:86 n This ~ 1.5:1.5:1:1 ratio deviates from the predicted 1:1:1:1 ratio n Again, the lower-than-expected number of whiteeyed flies can be explained by a lower survival rate for those flies n Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 3-93