UNIVERSITY OF SOUTH CAROLINA AIKEN DEPARTMENT OF BIOLOGY AND GEOLOGY ICHTHYOLOGY ABIO 598 (4 credit hours) Spring 2013 Course Policies, Procedures, and Syllabus Tues and Thurs 12:15-1:30; Lab Tues 3:05-5:45 Meeting Place: SBDG 107 Instructor: Dr. Virginia Shervette Email, Phone, and Office Location: virginias@usca.edu, 803.641.3605, SBDG 219A Office Hours: by appointment TEXTBOOK and LAB MATERIALS Required Text: The Diversity of Fishes 2nd Edition by Helman et al. 2010 Lab manual: TBA in Lab LAB SUPPLIES: Dissection kit. Surgical gloves are recommended for use with handling preserved specimens. Each student must provide his/her own eye protection and gloves when working with preserved specimens. Old clothes in case you get dirty. Tennis shoes or boots for outside work. COURSE OBJECTIVES and LEARNING OUTCOMES COURSE DESCRIPTION: An integrated approach to fish biology from a physiological and ecological viewpoint. Our class will build on a general background of fish diversity and environmental adaptations while discussing anatomy, physiology, ecology, behavior, and stress. We will also review the fundamentals of fish design and physiological adaptation to environment that contributes to their remarkable success. COURSE OBJECTIVES: Increase your familiarity with evolutionary history and taxonomic diversity of fishes Improve your understanding of the basic physiological and behavioral adaptations that fishes use to carry out their life cycle Enhance your skills at collecting and identifying local fish species Expose you to some of the issues surrounding the conservation of fish biodiversity in the environment. Introduce you to some of the quantitative techniques used in describing fish biology, and reinforce concepts of experimental design and hypothesis testing STUDENT COMPETENCY STATEMENTS: By the end of this course the student will have demonstrated the ability to: * Discuss biological principles and topics of historical and current interest and importance relating to fishes. * Describe the biological processes that operate at the multicellular levels to include histological, organismal, population, community and ecosystem levels of organization as this relates to fishes. * Apply theoretical concepts in the laboratory by following a written procedure. METHODS OF PRESENTATION: This course will consist of lectures by the instructors, lecture videos, classroom discussion, and group and individual laboratory exercises. The instructors will utilize appropriate modes of visual aids and laboratory equipment. METHODS OF EVALUATION: Achievement of course objectives will be evaluated by lecture exams, laboratory reports, notebooks, quizzes and exams, and a final comprehensive exam. COURSE GRADING and EXAMS Grades in the course will be determined as follows: 10% - Participation in lecture 10% - Participation in lab 10% - Lab notebooks (due last day of class) 30% - Three lecture exams 20% - Two laboratory exams 10% - Group research project 10% - Quizzes on reading materials in lecture and lab See the course schedule below for dates of lecture exams, lab exams and presentation. ATTENDANCE and PARTICIPATION 1. This is a survey course and covers a great deal of material. The text is good and can help explain lecture material you may not fully understand. I will not cover all of the text in class, but you will understand lectures better if you read the assigned text sections before you come to class, and you will do better on tests if you keep up with the reading. In addition, I will provide information in lecture that will supplement your text. You will be expected to know this additional material for exams, so it is imperative that you attend lectures to do well in this class. 2. The lab is heavily scheduled and you will be expected to stay for the entire period. 3. You will be expected to have read all laboratory exercises and the accompanying text references before attending labs. 4. No make-up exams will be given so do not miss any exams. 5. Students are expected to attend lectures and labs. Pop quizzes will be given periodically to encourage attendance. In addition, part of your final grade will come from class participation. I will post a rubric for how lecture and lab participation will be assessed. Keep in mind that one of the easiest ways to assign an “objective” grade for “participation” is to consider how often you come to class….. 6. You are strongly encouraged to make appointments with your instructor if you are having problems in the course. You may make an appointment or drop in if I am not busy with another student. 7. Upon prior approval, you will be allowed to use an electronic device to record lectures if the recording device is placed at the front lecture desk. However, the use of any other portable electronic devices, including cell phones, pagers, MP3 players, iPods, etc., during class or lab is not permitted. If you have any of these devices in your possession during class, they must be turned off and stowed away for the duration of the class period. If you are fiddling with phones, facebook, etc., then you are not “participating” in class and that will be noted. 8. If you have a physical, psychological, and/or learning disability which might affect your performance in this class, please contact the Office of Disability Services, 134 B&E, (803) 643-6816, as soon as possible. The Disabilities Services Office will determine appropriate accommodations based on documentation. HONOR CODE AND CHEATING HONOR CODE: In our hearts we know that cheating is wrong. It is the responsibility of every student at the University of South Carolina Aiken to adhere steadfastly to truthfulness and to avoid dishonesty, fraud, or deceit of any type in connection with any academic program. Any student who violates this Honor Code or who knowingly assists another to violate this Honor Code shall be subject to discipline. By signing your name to an assignment, quiz, or test you are acknowledging that you will adhere to The Honor Code at USCA. This class is designed to benefit you, the student. Please do not allow yourself to succumb to any form of cheating. Suspicion of cheating will be reported automatically to Academic Integrity. Cheating on an Exam will result in an F in the course. A short note about PLAGIARISM (from Dr. Dyer) Any and all work turned in for credit is assumed to be your work and the product of your brain and your brain alone. Every word and every sentence is your work. Work can be considered plagiarism even if it is not exact copying. My advice is “don’t make me look” because when I get suspicious enough to look, I usually find. For your information, it is plagiarism…. *if you fail to cite a reference after giving a factual statement; *if you fail to use quotation marks (and I do not allow quoting in science papers); *if you turn in work with your name on it that someone else has produced; *if you rephrase someone else’s work or merely change a few words; *if you have the same order and form of sentences as the source material or someone else’s work; *if you consistently mis-cite or mis-use cites in a way that suggests intentional avoidance of detection; *if you and a lab partner work together and turn in work that is substantially the same. ALSO, If a “draft” of a paper has any of the above problems, it is still plagiarism. If I cannot tell who in a lab group produced a piece of work, no credit will be assigned to anyone in the lab group. (This does not include “group” reports.) If you give your work to someone else and they turn it in, I have the option of including you in the plagiarism charge because you supported it. If the references given are not accessible to the instructor, no credit will be given. Therefore, if you use obscure or unusual references, it is your responsibility to turn in a copy with the assignment or make it available to me. If you pay someone else to write or prepare an assignment for you, that’s another form of academic dishonesty. Be aware that what was allowed in high school does not necessarily apply at USCA. If there is anything about the above statements that are not clear, don’t wait until an assignment is due to find out more. Many students believe that having no more than three consecutive words from an original source will fool the electronic programs that detect plagiarism. I don’t use those programs; I read the papers that are given in the reference list and compare them to the student’s work. If I find any of the problems listed above, there will be no first warning. There is no latitude given because there is no excuse for plagiarism. Therefore, if I find any work that is too similar to other work, either in the class or out of the class, please understand that I have no options but to follow the rules as outlined in the USCA Faculty Manual. The student(s) involved will be summoned to my office, the situation will be explained. There will be no options for “redoing” the work. A zero will be given to the assignment, and a formal letters will be sent to the student, the student’s department chair, and to the Executive Vice Chancellor for Academic Affairs to document the situation. As with all academic issues, there is an avenue for appeal (detailed in the USCA Student Handbook), but it is not through me. Date 15 Jan Tues Lecture Schedule Topic Introduction to Class; The Science of Ichthyology Chapter 1 17 Jan Thurs Systematic Procedures 2 22 Jan Tues Skeleton, skin, and scales 3 24 Jan Thurs 4 5 6 7 Feb Thurs Soft Anatomy Read on Own [Oxygen, metabolism, and energetics] Lecture: Sensory systems No class – catch up Read on Own [Homeostasis] Lecture: Functional Morphology Early life history 12 Feb Tues Juveniles, adults, age, and growth 10 14 Feb Thurs Exam 1 19 Feb Tues “A History of Fishes” 11 21 Feb Thurs Chondrichthyes 12 26 Feb Tues Living Primitive Fishes 13 28 Feb Thurs Teleosts 1 14 15 16 17 12 Mar Tues Teleosts 2 Lecture: Zoogeography Read on Own [Fish genetics] NO CLASS (Spring Break) 14 Mar Thurs NO CLASS (Spring Break) 19 Mar Tues Special habitats and adaptations 21 Mar Thurs Guest Lecture: Dr. Mike Paller, SNL 26 Mar Tues Exam 2 28 Mar Thurs Fishes as Predators 19 2 Apr Tues Fishes as Prey 20 4 Apr Thurs Fishes as social animals: reproduction 21 9 Apr Tues Fishes as social animals: aggression…. 22 11 Apr Thurs Cycles of activity and behavior 23 16 Apr Tues Individuals, Populations, and assemblages 24 18 Apr Thurs Communities, ecosystems, etc 25 23 Apr Tues Conservation of Fishes 26 25 Apr Thurs Exam 3 29 Jan Tues 31 Jan Thurs 5 Feb Tues 5 Mar Tues 7 Mar Thurs ? May Tues Research Presentations (during exam period) 7 8 9 18 LABORATORY SCHEDULE Week 14 Jan 21 Jan 28 Jan Topic No physical meeting of lab but must read: 1. Methods for Fish Biology and 2. Sampling Considerations (on Blackboard) Quiz on readings Getting to know fishes inside and out Read on own 3-5 Fish Research Collections and Fish ID Read before next week: 6. Electrofishing Materials Pdfs on web Dead stuff Pdfs on web Stuff in lab Pdf on web 4 Feb Fish Identification: Freshwater Fishes of SC Dead stuff 11 Feb Fish Identification: More Freshwater Fishes More dead stuff 18 Feb Tentative Trip to Zoo or Electrofishing Read 10 Quantitative Description of Diet Alive stuff 25 Feb Fish ID and Diet Analysis Dead stuff 4 Mar Lab Exam 1 Start Reading all of the following: 7. Age Determination; 9. Growth; 16. Reproduction; 18 Autecology 11 Mar Spring Break 18 Mar Dr. Zelmer: Parasites and Fishes 25 Mar Quantifying Age in Fishes 1 Apr Quantifying Reproduction in Fishes 8 Apr Fish Identification: Estuarine Fishes 15 Apr Fish Identification: More marine stuff 22 Apr Lab Exam 2 ACKNOWLEDGMENT OF READING THE SYLLABUS In your natural handwriting copy out the following statement in the space provided below: I have read the ABIO 598 syllabus and understand the policies on lecture, lab, grading, exams, attendance, quizzes, honor code, and cheating. I have also read and understand the additional course information. While physically attending this class, I will act in a manner that is respectful to me, other students, the professor, and guest speakers. Write out statement below: Signature: _________________________________ Name printed:_______________________________ Date: ______________________ *You will not receive credit for this course until you have completed and turned in this acknowledgement.