Water transport in trees - The physiochemical properties of water under negative pressure Bachelor thesis Mascha Gehre Supervised by Dr. Ir. Bernd Ensing 29. 07. 2012 Tabel of contents 1. Introduction 1.1 General Introduction 1.2 Motivation 1.2.1 Determination of the equation of state of water under negative pressures. 1.2.2 Determination of the pressure at which cavitation in liquid water can be observed. 1.2.3 Creation of new reaction paths at higher pressures . 1.2.4 Determination of the transition state and the size of the critical cavitation nucleus. 2. Theory 2.1 Theoretical background 2.1.1 Molecular Dynamics simulations 2.1.2 Transition path sampling 2.2 Simulation Details 2.2.1 Equation of sate of water under negative pressure 2.2.2 Cavitation Pressure 2.2.3 Creation of new reaction paths at higher pressures 2.2.4 Determination of the transition states and the size of the critical cavitation nucleus. 3. Results & Discussions 3.1 Equation of state of water at negative pressure 3.2 Determination of the spinodal Pressure Ps 3.3 Creation of reaction paths at higher pressures and determination of their transition states 3.4 Determination of the transition state and the size of the critical cavitation nucleus. 3 6 6 7 7 8 8 10 12 13 13 13 14 15 17 17 4. Conclusion 19 5. Further Research 19 6. References 20 1. Introduction 1.1 General Introduction The protection of the remaining forests that cover our planet has become an important topic during the last decades. This is because essentially all free energy utilized by biological systems arises from solar energy that is trapped by the process of photosynthesis. This means that photosynthesis is the source of essentially all the carbon compounds and all the oxygen that makes aerobic metabolism possible.1 However, this is not the only reason why forests need to be protected. Trees also play an essential role in the regulation of the global water cycles and in dissipating the incoming solar radiation with a relevant cooling effect. Only 1 hectare of forest can evaporate through the leaves 40.000 liters of water which makes them extraordinary efficient machineries for adsorbing water from the soil and transporting it to the leaves.2 Therefore, scientist are eager to understand the processes of water transport within trees in order to develop novel artificial devices that can draw up water under tension over long distances, equivalent to the process in trees.2, 3 However the process of lifting water to the top of very tall trees against gravity is complex and till this day not totally understood. The movement of water occurs through a complex network of very narrow “tubes”, the so called xylem conduits. The movement originates from the transpiration process occurring in the leaves. When stomata open, the internal leaf mesophyll comes in direct contact with the free atmosphere, in which the water content is generally lower. The water wetting the cell walls is forced to evaporate and the surface of the remaining water is drawn into the pores, where it forms concave water menisci. Because of the surface tension, the pressure in the water decreases and becomes negative. Therefore, water flows in trees under a thermodynamically metastable state with respect to its vapor phase. This results in the nucleation of vapor bubbles, also known as cavitation.2 However, cavitation can stop the circulation of water in the vessels of real trees or in synthetic ones that are used for microfluidic flow transport driven by evaporation.3 This implies, that before artificial devices can be developed, which draw up water over long distances, the process of cavitation has to be totally understood. In order to explain the process of cavitation we first have to explain what we mean when we say that water is in a metastable state. Any liquid can be prepared in a metastable state with respect to its vapor in two ways: either by superheating above its boiling temperature Tb, or by stretching below its saturated vapor pressure Psat. This can be explained in terms of the density of the liquid. Since both cases result in an increase in the distance between the molecules the density of the liquid decreases. When the factor, by which the distances between the molecules are increased is not too high, the attractive forces between the molecules allow the system to remain in its liquid state. The system is then stated to be metastable with respect to its vapor. However, when the intermolecular distances between the molecules get too large, the attractive forces between the molecules are too weak to allow the system to remain in its liquid state. As a result the system becomes mechanically unstable. The critical density and pressure at which the system gets mechanically unstable are stated as the spinodal density ρs and the spinodal pressure Ps. Beyond this point the system will eventually return to equilibrium by nucleation of vapor bubbles.4 The classical nucleation theory (CNT) is the simplest way to describe the thermodynamics of the nucleation of a more stable phase in a metastable phase. 5 In a liquid that is superheated at constant pressure, P, to a temperature, T, above Tb, or, equivalently, stretched at constant temperature, T, to a pressure, P, below Psat(T), the minimum work required to create a sphere of vapor of radius R in the liquid is (1) where P' is the pressure at which the vapor is at the same chemical potential as the liquid at P and σ is the liquid-vapor surface tension. The first term in equation (1) gives the energy gained when forming a volume of the stable phase, whereas the second term is the energy cost associated with the creation of an interface. Their competition results in an energy barrier (2) reached for a critical bubble of radius Rc =2σ /(P'-P).4 A bubble whose radius is larger than Rc will grow spontaneously.5 Equation (2) can be now rearranged in such a way that we obtain an expression , that relates the height of the reaction barrier to the size of the critical bubble and the liquid-vapor surface tension as follows: (3) 1.2 Motivation This project is a subproject of the project TENSIWAT. TENSIWAT addresses the problem of water transport in plants within a multi-disciplinary and fundamental approach. This means that theoretical and experimental physicists, chemists, plant ecologists and material engineers will collaborate for a full attack enterprise where all aspects of the water transport in trees are studied and interrelated. The ultimate goal of TENSIWAT is to provide a theoretical an experimental framework, which allows one to understand how trees are able to easily “handle” tensile water over long distances. Therefore, the physiochemical properties of metastable water and the role of conduits characteristics within trees are studied. The obtained information can then be used to develop novel artificial devices that can draw up water under tension over long distances.2 The main goal of this subproject is to gain more insight and understanding of the physiochemical properties of pure water under tension. During the three and a half months of research the following topics are treated: 1. Determination of the equation of state (EOS) of water under negative pressure. 2. Determination of the spinodal pressure (Ps). 3. Creation of new reaction paths at less negative pressures. 4. Determination of the transition state, TS, of each reaction path, and determination of the size of the critical cavitation nucleus at the transition state. 1.2.1 Determination of the equation of state of water under negative pressures It is an experimental fact that each substance is described by an equation of state (EOS), an equation that interrelates the volume, V, the amount of substance (number of molecules), n, the pressure, P, and the temperature, T. However, it has been established experimentally that it is sufficient to specify only three of these variables because the fourth variable is fixed. The general form of an EOS is P = f(T,V,n). This equation tells us that, if we know the values of T, V, and n for a particular substance, then the pressure has a fixed value. Each substance is described by its own EOS, but we know the explicit form of the equation in only a few special cases.6 Over time the scientific community proposed different equations of state of liquid water. The most recent international formulation is the so-called IAPWS-95 formulation (IAPWS), which was published by the International Association for properties of Water and Steam.7 The formulation at negative pressures is based on experimental data obtained at positive pressures. In Figure 1 a graphical representation of the IAPWS is shown. As can be seen, the IAPWS predicts a spinodal pressure of -1600 bar. However, the validity of the extrapolation to negative pressures had been tested only indirectly or with a weakly metastable liquid.8 Therefore, Caupin and coworkers recently determined, by acoustic experiments, the values on the right hand side of the vertical in Figure 1. Their data prove the fidelity of the IAPWS down to -260 bar. Furthermore, by the use of a fiber optic probe hydrophone (FOPH) they determined the spinodal density ρs from which they calculated Ps = -287 ± 10.5 bar at 23.3 °C.8 The obtained value for Ps is consistent with the majority of the results of numerous other cavitation experiments.14 However, there is one exception. In so-called inclusion experiments, in which water is trapped in small pockets inside crystals, spinodal pressures down to -1400 bar were found.9 Figure 1: Equation of state of liquid water at 23.3 °C from the IAPWS formulation extrapolated to their spinodal pressures. The range of pressures reached in acoustic experiments is limited to the right hand side of the vertical line.8 This questions whether the water samples prepared for experiments, except for inclusion experiments are totally pure. When we say, that a water sample is not totally pure, we mean that destabilizing impurities are present in the water sample, which trigger the process of cavitation. Therefore those impurities lower the height of the reaction barrier and lead to a higher spinodal pressure.10 Caupin and coworkers suggest that hydronium ions, naturally occurring in neutral water could be such a destabilizing impurity. They also predict that hydronium ions would be absent or inactivated in the inclusion experiments. This would explain, why the spinodal pressures found for those experiments are shifted to weigh more negative pressures.4 Hydronium ions could have a destabilizing effect because they occurrence leads to the proton charge transfer from a H3O+ ion to a neighboring H2O molecule. In the first step of the mechanism of the proton transfer the hydrogen-bond coordination number of one of the H2O molecules in the first solvation shell is lowered by the breaking of a hydrogen bond to the second solvation shell.11 Therefore, the existence of hydronium ions destabilizes the hydrogen bond network within the system and could trigger cavitation. Due to a lack of data at large negative pressures, the disagreement between experiments and theory cannot be solved.4 Therefore, we will determine an equation of state for an idealized water system under negative pressure by performing computer simulations of the form P=f(T,V,n). The density of the treated water system varies between 1020 and 300 kg/cm3. That our system is idealized means that no stabilizing or destabilizing impurities will be present. In real trees stabilizing or destabilizing impurities are for example present in the form of ions, which are dissolved in the water, that is transported within the xylem conduits. Also the presence of boundary conditions in the form of the walls of the xylem conduits could have a stabilizing or destabilizing effect on the metastable water system. However, in the system, which is treated throughout this project, those impurities will be absent. Besides that, the formation of hydronium ions, which spontaneously occurs in natural water, will not take place during the performed simulations. Therefore, in accordance with the theory proposed by Caupin and coworkers we expect that we will find a spinodal pressure, similar to the spinodal pressure predicted by the IAPWS formulation. This means Ps = ± 1600 bar. 1.2.2 Determination of the pressure at which cavitation in liquid water can be observed. After determining the equation of state in the form: P = f(T,V,n) (4) we are interested in determining the highest pressure, at which cavitation can be observed in the performed simulations. This pressure is equal to the spinodal pressure, Ps. In order to do so we will perform simulations of the type: V = f(T,P,n) (5) In accordance with the IAPWS formulation, we expect that the spinodal pressure will lie somewhere in the area of the minimum of the equation of state of water under negative pressure. 1.2.3 Creation of new reaction paths at less negative pressures After we determined the highest pressure, at which cavitation can be observed, we obtain a reaction path, which shows how a metastable water phase returns to equilibrium by the formation of water bubbles. From the obtained reaction path lots of informations about the process of cavitation at the determined spinodal pressure can be obtained. However, we expect that the determined spinodal pressure will be substantially more negative than pressures found in natural systems, like trees.2 Therefore, we are interested in determining reaction paths at higher pressures, which are more likely to be found in nature. In order to do so we will use the method of Transition Path Sampling (TPS). The method will be explained in full detail in section 2.1.2. 1.2.4 Determination of the transition state and the size of the critical cavitation nucleus. As was stated in equation (3), the classical nucleation theory states, that the radius of the critical nucleus Rc is related to the height of the energy barrier, Eb, in the following way: According to equation 3, The CNT predicts that the critical nucleus increases as the energy barrier of the system increases. By determining the size of the critical nucleus at the transition state of each reaction path we will determine, if the size of the critical nucleus does indeed increase as the height of the reaction barrier, Eb, does increase. As can be seen in Figure 2, the transition state is the moment when our system crosses the energy barrier and is therefore equal to the height of the reaction barrier.16 Figure 2: Change in the free energy along the transition of the initial state A into the final state B. The height of the reaction barrier is defined as the transition state. Once we located the precise position of the transition state for each reaction path, we are therefore able to obtain information of the precise configuration of the system at the transition state. This means that we can determine the size of the critical nucleus of our system, which is nothing less than the size of the cavitation nucleus at the transition state. An increase in the size of the critical nucleus as the pressure becomes less negative for our system, would also support the theory proposed by Caupin and coworkers. The presence of destabilizing impurities in the water system would in fact decrease the height of the reaction barrier for cavitation and would therefore result in a less negative spinodal pressure, Ps. 2. Theory 2.1 Theoretical background 2.1.1 Molecular Dynamics Simulations Gromacs The method of choice for this study is the Gromacs Molecular Dynamics Simulation method. Gromacs uses classical mechanics to describe the motion of atoms.12 This means that Newton’s laws of motion F = ma a = dv/ dt v = dr/ dt, are used, where the vector F is the force on a particle, a its acceleration, v the velocity and r the position. M is the mass of a particle and t is time.13 For every time step of the simulation, Newton’s equations of motion for a system of N interacting atoms (6) and the potential function V (r 1 , r 2 , . . . , r N ), which is a negative derivative of the forces, (7) are solved simultaneously. During the simulation, we made sure that the temperature and pressure remain at the required values. Moreover, the coordinates, velocities and forces which are calculated after every time step are written to an output file at regular intervals. The coordinates as a function of time represent a trajectory of the system. After initial changes, the system will usually reach an equilibrium state.12 The Born-Oppenheimer approximation During the Gromacs Molecular Dynamics simulations a conservative force field, which is a function of the positions of atoms, is used. This means that the electronic motions are not considered, implying that the electrons are supposed to adjust their dynamics instantly when the atomic positions change, and remain in their ground state.12 Periodic Boundary conditions Since the system size is small, there are lots of unwanted boundaries with its environment (vaccum). This condition is avoided by the use of periodic boundary conditions to evade real phase boundaries. Since real liquids are not composed of period units, such as crystals, one must be aware that something unnatural remains.12 2.1.2 Transition Path Sampling The theory Almost all reactions consist of the rapid transition of long-lived stable states. By “stable” also thermodynamically metastable states are designated. Such transition events are rare because the stable states are separated from each other by high potential energy barriers.13 An example of such an energy barrier separating the two stable states, A and B, is given in Figure 2. But while being rare, these transitions proceed swiftly when they occur.13 Transition Path Sampling (TPS) is a technique that allows one to compute the rate of such a barriercrossing process without a priori knowledge of the reaction coordinate or the transition state.6 The basic idea of transition path sampling is to focus only on those parts of the trajectory that connect both the initial and final states, and hence those that are crossing the free energy barrier.15 The method Since a trajectory crosses the free energy barrier an infinite number of times an ensemble of crossing paths is formed, the so-called transition path ensemble (TPE). In order to obtain the path ensemble a sampling scheme is used, in which an existing pathway connecting the initial and final state is altered, so that new pathways are created. The creation of new reaction paths is followed by accepting or rejecting new trial pathways according to the following acceptance rule: First the initial and final states of the reaction of interest are defined. Then a trajectory is created that connects the initial to final state.15 In Figure 3 an example is given of a trajectory that connects an initial state A to a final state B. The initial state A in Figure 3 represents a metastable water phase and the final state B represents the simultaneous existence of a stable water phase and a vapor phase. The formation of a stable water and vapor phase from a metastable water phase is indicated by an increase in the box size, which is represented on the y-axis in Figure 3. Figure 3: Trajectory that connects the initial state A to the final state B. After the initial and final states are defined, certain time slices on the current trajectory that connect the initial to the final state are randomly selected, as shown in Figure 4. Then the momenta of the time slices are changed slightly and a new trajectory of the same length is created by integrating the equations of motion both forward and backward in time. The new trial trajectory is accepted if it connects the initial with the final state. Otherwise it is rejected and the old path is kept. The shooting move is then repeated with a different shooting time slice. In fact, for complex systems only shots initiated from the barrier region rather than the stable state regions have a chance of creating acceptable pathways.15 Figure 5 shows that in our example only the trial trajectory created from frame 82 may be accepted. Those created from Frame 60 and Frame 128 has to be rejected because they do not connect the initial with the final state. Figure 4: Random selection of time slices along the trajectory displayed in Figure 3. Figure 5: Integration of the equations of motions forward and backward in time for the three time slices selected in Figure 4. 2.2 Simulation Details For the simulations performed in the scope of this project, a cubic box with periodic boundary conditions was constructed. The box was then filled with 360 water molecules and all of the simulations were performed at room temperature (298 K). The size of the box and the pressure were chosen in such a way, so that liquid water was in a metastable state with respect to its vapor. The time scale of the performed simulations varies between 100 ps and 100 ns. Figure 6: Representation of a periodic box containing 360 water molecules 2.2.1 Equation of sate of water under negative pressure The equation of state of water will be determined by the performance of simulations in which the volume of the box (V), the temperature (T) of the system and the number of molecules (n) will be held constant. In that way we will obtain the pressure that corresponds to a certain density of water. The simulation time for those simulations will be 100 ns. 2.2.2 Cavitation Pressure In order to determine the pressure at which pure water separates spontaneously in a water phase and a vapor phase, we will perform simulations in which the pressure (P), the temperature (T) of the system and the number of molecules (n) will be held constant. We will perform simulations between -100 bar and -5000 bar. The simulation time for those simulations will be 100 ns. 2.2.3 Creation of new reaction paths at less negative pressures New reaction paths will be created by the method of TPS, which is described in section 2.1.2. In that way we will try to create reaction paths within a pressure range of -2148 bar to -1800 bar. The simulation time for those simulations will be 100 ps. 2.2.4 Determination of the transition states and the size of the critical cavitation nucleus The transition state of the obtained reaction paths at different pressures will be determined by determining the probability that cavitation will occur along the path. The probability of cavitation will be determined by selecting different frames along each reaction path. For each frame the equations of motion will be solved in 10 different simulations for which the initial velocities will be randomly chosen. In that way 10 different reaction paths will be obtained that will eventually end up in the initial state or the final state. Depending on the relative positions of the selected frames to the transition state, the ratio of reaction paths that will end up in the initial state A or B will vary. For those frames which are exactly at the transition state or nearby, the amount of reaction paths that will end up in the initial state A or the final state B will be equal. As can be seen in Figure 7, in our case this means that we will obtain 5 reaction paths that will end up in A and 5 that will end up in B. Figure 7: Integration of the equation of motions for Frame 82 is performed 10 times. For every single integration random initial velocities are chosen but the initial position of the atoms are the same. 3. Results & Discussion 3.1 Equation of state of water at negative pressure The EOS of water (solid line), which we determined by performing computer simulations of the type P= f(T,V,n) is given in Figure 8. By the use of a Visual Molecular Dynamics Software, VMD, we were also able to determine the pressure region in which the spinodal pressure can be found. We able to observed cavitation at a density of 880 kg/m3, but no more at a density of 860 kg/m3. This means that the spinodal pressure lies in the range between -2044.34 and -2220.44 bar. Figure 8: Equation of state of liquid pure water at 298 K determined by computer simulations (solid line).Equation of state of liquid water at 23 °C from the IAPWS formulation extrapolated to the spinodal pressure (dashed line).The range of pressures reached in acoustic experiments is limited to the right hand side of the vertical line. As shown in Figure 8, the EOS of water (solid line), which we determined by computer simulations, has the same course as the IAPWS (dashed line) down to a density of 940 kg/m3. Beyond this density the values are shifted to more negative pressures and have a minimum at a density of 880 kg/m3. Therefore, our results suggest that for an idealized water system, which contains no boundary conditions and in which no destabilizing or stabilizing impurities are present, the spinodal pressure is shifted to even more negative pressure than those proposed by the IAPWS. This supports the theory that in all experiments, except in the inclusion experiments, destabilizing impurities are present, which shift the spinodal pressure to less negative pressures.10 That the values we measured are shifted to even more negative pressures than those found for the IAPWS formulation can be explained by the fact that we are using a periodic box in our simulations. Therefore, our system has no boundary conditions at all, whereas in real experiments boundary conditions can only be minimized but not totally avoided. Another explanation could be the absence of the formation of hydronium ions in our system. Those are formed spontaneously in real systems but in our system the formation can only take place when a single proton is added to the system. 3.2 Determination of the spinodal Pressure Ps In order to determine the highest pressure at which spontaneous cavitation takes place we performed simulation between -100 and -5000 bar. We tried to observe the process of cavitation by two methods. By the use of a Visual Molecular Dynamics Software, VMD, and by analyzing the potential and total energy, the pressure, the box size, the density and the temperature in the course of the performed simulations. VMD The highest pressure at which we were able to observe cavitation by the use of VMD is -2148 bar. In Figure 9 the three different stages of the simulation at -2148 bar are shown. In stage a) one observes a homogeneous metastable water phase. In stage b) the formation of a vapor bubble in the left, low corner of the box is observed. In stage c) a vapor and water phase have formed which exist simultaneously. Figure 9: Snapshots of the simulation of a periodic box containing 360 water molecules at a pressure of -2148 bar. Snapshot a) shows a homogeneous metastable water phase. In snapshot b) a vapor bubble can be observed in the left, low corner. In snapshot c) a stable water phase and a stable vapor phase have formed. Gromacs Energies Since the formation of a vapor bubble is difficult to see with the naked eye, VMD it is not the best identification method. Therefore, we also interpreted the potential energy, pressure, temperature, boxsize and density in the course of the performed simulations. In Figure 10 and Figure 11 the obtained values are shown as functions of time for the simulations at -2147 and -2148 bar respectively. The simulation at -2148 bar is the simulation, at which we were still able to observe cavitation. In the simulation at -2147 bar and in all of the simulations at less negative pressures we were not able to observe cavitation by the use of VMD. Figure 10: The potential and total energy, pressure, temperature , box size and density in the course of the simulation at -2148 bar. Figure 11: The potential and total energy, pressure, temperature, box size and density in the course of the simulation at -2147 bar. By the comparison of Figure 10 with Figure 11 we find no noticeable differences between 0 and 250 ps. However, beyond 250 ps the obtained values for the two simulations are quite different. As shown in Figure 11, the density of the system decreases at about 250 ps, which is in accordance with an increase in the distances between the water molecules. Then at 300 ps the boxsize, the pressure, the temperature and the total and potential energy increases, which is in accordance with the formation of a vapor bubble. At about 320 ps however, we noticed a small decrease in the temperature and the total and potential energy, which is in accordance with the formation of a stable vapor and water phase. While during the formation of the stable water phase, the distances between the molecules are decreasing again, which results in slight decreases in the values. 3.3 Creation of reaction paths at higher pressures and determination of their transition states By the use of TPS we were able to create reaction paths at -2000 and -1800 bar. 3.4 Determination of the transition state and the size of the critical cavitation nucleus. By the method described in section 2.2.4 we were able to determine the transition state of the reaction paths at -2148 , -2000 and -1800 bar. Once we allocated the position of the transition state we could obtain information of the precise configuration of the system at the transition state. The values of the volumes of the box at the transition state which are stated the critical volumes, Vc, are listed in table 1. Pressure (bar) critical box size length (nm) -2148 2,3532 -2000 2,3587 -1800 2,3633 Tabel 1: Critical volume, Vc, of the simulation box containing reaction paths at -2148, -2000 and -1800 bar. Critical volume of the box (nm3) 13.03096 13.122547 13.199472 360 water molecules at 298 K for the Figure 12 shows that the size of the box at the transition state and, therefore, also the volume of the box at the transition state, increases as the pressures becomes less negative. Since the volume of the box at the transition state is proportional to the size of the critical nucleus at the transition state we also know that the height of the reaction barrier does increase in accordance with equation (3). Since the height of the reaction barrier increases as the pressure increase, the event of cavitation is less likely to take place as the CNT predicts.4,5 Therefore, these results also support the theory that destabilizing impurities are present in those experiments, for which less negative spinodal pressures are found. 4,9,10 2.36600 2.36400 box size (nm) 2.36200 2.36000 2.35800 2.35600 2.35400 2.35200 2.35000 2.34800 -2148 -2000 pressure (bar) -1800 l Figure 12: Relation between the critical box size at the transition state for reaction paths at different pressures. 4. Conclusion We were able to determine an equation of state that strongly supports the IAPWS formulation. The shift of the spinodal pressure to more negative pressures, which was also confirmed by simulations of the type V = f(T,P,n) can be explained in the absence of boundary conditions and in the absence of the formation of hydronium ions in our system. The obtained reaction path at the spinodal pressure, Ps, was used for the creation of new reactions paths at less negative pressures by using the method of transition path sampling. In that way we were able to obtain reaction paths at -2000 and -1800 bar. For each path we were able to allocate the position of the transition state. Therefore we were able to determine, that the size of the critical nucleus and, hence, the height of the reaction barrier increases as the pressure increases, meaning that the event of cavitation is less likely to take place as the pressure increases. Our results support therefore strongly the theory of Caupin and coworkers, that destabilizing impurities are present in the experiments, for which less negative pressures were found. However, since we were only able to make a rough estimation of the size of the critical nucleus, more accurate results are needed in order to determine that the deviations in the size of the critical nucleus are not caused by an error in the measuring method. 5. Further research During this project simulations of pure water under negative pressure were performed. The spinodal pressure, which was obtained during the performed simulations lies at around -2148 bar, which is an even less negative pressure, than the one predicted by the IAPWS formulation. Furthermore we were able to determine that the height of the reaction barrier increases, as the pressure increases. This means that the event of cavitation is less likely to take place as the pressure becomes less negative. However, since the determined differences in the critical volumes, Vc, are rather small, it will be necessary to develop a method, that measures the precise size of the critical nucleus. In that way one can make sure, that deviations in the size of the critical nucleus at different pressures are not caused by an error in the measuring method. Besides that, it would be interesting to determine which effect impurities would have on our system. Our results support namely only the theory of Caupin and coworkers that destabilizing impurities decrease the height of the reaction barrier for cavitation, but they do not identify the impurities. Therefore there is need for computer simulations, in which hydronium ions are added to the system and need for simulations, in which boundary conditions of all different kinds are added. 6. References 1. Atkins, P; De Paula, J Physical Chemistry, 8th ed.,Oxford Press, Oxford, 2006 2. Maritan, A TENSIWAT, A fundamental approach to tensile water transport in natural and artifical trees, Eropean Research Council 3. Vincent, O; Marmottant, P; Quinto-Su, PA ; Ohl, CD Birth and Growth of Cavitation Bubbles within Water under Tension Confined in a Simple Synthetic Tree American Physical Society 2012, 108, 184502, 4. Caupin, F; Hebert, E; Cavitation in water: a review C. R. Physique 2006, 7, 100-1017 5. Arvengas, A; Herbert, E; Cersoy, S; Davitt, K; Caupin F Cavitation in Heavy Water and Other Liquids J. Phys. Chem. 2011, 115, 14240–14245 6. Atkins, P; De Paula, J Physical Chemistry, 8th ed.,Oxford Press, Oxford, 2006 7. Baltasar, EH; Taravillo, M; Baonza, VG; Sanz, PD; Guignon, B Speed of Sound in Liquid Water from (253.15 to 348.15)K and Pressures from (0.1 to 700) Mpa J.Chem. Eng. Data, 2011, 56, 4800-4807 8. Davitt, K; Rolley, E; Caupin, F; Arvengas, A; Balibar, S Equation of State of water under negative pressure, American Institute of Physics 2010, 133, 174507 9. Zheng, Q; Durben, DJ; Wolf, GH; Angell CA Liquids at large negative pressures: water at the homogenous nucleation limit Science, 1991, 254, 829-832 10. Davitt, K; Arvengas, A; Caupin, F Water at the cavitation limit: Density of the metastable liquid and size of the critical bubble EPL 2010, 90, 16002 11. Woutersen, S; Bakker, HJ, Utrafast Vibrational and Structural Dynamics of the Proton in Liquid Water, 2006, American Physical Society, 96, 138305 12. Gromacs Manual 13. Leenders, E Proton transfer in the photocycle of the photoactive yellow protein, 1st ed., 2008 14. Dellago, C; Bolhuis PG Transition Path Sampling and Other Advanced Simulation Techniques for Rare Events Springer-Verlag , Berlin Heidelberg, 2008 15. Juraszek, J; Vreede, J; Bolhuis, PG Transition path sampling of protein conformational changes Chemical Physics 2012, 396,30-44 16. Atkins, PW en Jones, LL Chemical Principles, 3rd ed., W.H. Freeman, New York, 2005