1 Abyssomicin C John Trant Department of Chemistry University of Ottawa, 2007 Abyssomicin C—From isolation to mechanism of action An introduction to the tetrahydrofolate biosynthetic 3 pathway The isolation identification of Abyssomicin C A brief retrosynthetic overview of Abyssomicin C K.C. Nicolaou’s synthesis: The application of Lewisacid catalysed self-assembling (LACASA) DielsAlder reaction The mechanism of action Folic Acid: An Introduction O C O N HN H2N Vitamin B9 N CO2H N H CO2H N H N Needed for the catalysis of one-carbon transfer reactions including dTMP from dUMP, and in the catalysis of glycine synthesis. Not synthesised in vertebrates, but synthesised in plants, archaea, fungi, bacteria, and some lower animals. O O NH NH O -O P O O4 N O OH dUMP O O -O P O O- N O OH dTMP O p-Aminobenzoic acid/Tetrahydrofolate pathway Aminodeoxychorismate Synthase Aminodeoxychorismate COO- COO- COO- COONH3 PabA HO OH O OH COO- COO- O OH Shikimic Acid H2N NH N N N O Dihydrofolate HN Oxidase HO2C O CO2H Folic Acid 5 N Dihydropteroate COOH Synthetase Sulfa Drugs C O CO2H Dihydrofolate NH2 p-Aminobenzoic Acid H2O Glutamic Acid HN HO2C O HN Trimethoprim HN NH Dihydrofolate HN Synthetase HN HN C Aminodeoxychorismate Lyase N N COO- NH3+ H2N N HN O O OH Chorismate Glutamine Glutamic Acid H2N PabB COO- Dihydropteroate HO O P HO O P OH O O H N N NH2 NH N O Dihydropteridine CO2- -O2C Phenylalanine and Tyrosine p-hydroxybenzoate O CO2- Ubiquinone (Coenzyme Q) OH Prephenate 2-amino-2-deoxyisochorismate CO2NH3+ O CO2- Chorismate Chorismate lyase mutase CO2- Anthranilate synthase O OH 4-amino-4-deoxychorismate CO2- CO2- p-Aminobenzoate Synthase OH O NH3+ CO2- Isochorismate Synthase CO2NH3+ O 6 CO2- CO2OH CO2- Anthranilate Isochorismate Tryptophan Siderophore biosynthesis NH3+ p-aminobenzoate Folate Kozlowski, M.C et al. J. Am. Chem. Soc. 1995. 117 2128-2140. p-Aminobenzoic acid/Tetrahydrofolate pathway Aminodeoxychorismate synthase Abyssomicin C Aminodeoxychorismate COO- COO- COO- COONH3 PabA HO OH O OH Shkimic Acid COO- O C H2N CO2H NH H2N N Dihydrofolate synthetase 7 HN N Folic Acid HN p-aminobenzoic acid COOH N Dihydropteroate synthetase NH3 N NH2 O HN H2O HN NH N HN NH O Aminodeoxychorismate lyase O HN COO- NH3+ Glutamic Acid N HN Dihydrofolate Oxidase N O OH Glutamine HO2C COO- O OH Chorismate PabB HO2C C O CO2H Dihydrofolate Glutamic Acid COODihydropteroate HO O P OH HO O P O O H N N NH2 NH N O dihydropteridine The Abyssomicins Verrucosispora AB-18-032 HO O N 8 O O O O O O O O O HO O O O O OH OH OH B C D Riedlinger, J. et al. J. Antibiotics. 2004. 57, 271-279. Bister, D. et al. Angew. Chem. Intl. Ed. 2004. 43, 2574-2576. Abyssomicin C as a Chorismate mimic O C -O COOHO O -OOC O COO- Chorismate OH O O O O O OH 9 Copley, A.D.; Knowles, J.R. J. Am. Chem. Soc. 1987. 109, 5008-5013. Abyssomicin C O O O O OH 10 O A Short Retrosynthetic Overview Snider/Sorenson/Couladaros Approach to the initial disconnection O O O O O O O O O OH OH O MeO O O O O O O O O Li O O MeO O O MeO 11 1 Snider, B.B.; Zou, Y. Org. Lett. 2005. 7, 4939-4941. Zapf, C.W.; Harrison, B.A.; Drahl, C.; Sorenson, E.J. Angew. Chem. Int. Ed. 2005. 44, 6533-6537. Couladouros, E.A.; Bouzas, E.A.; Magos, A.D. Tet. Lett. 2005. 62, 5272-5279. A Short Retrosynthetic Overview Sorenson’s Retrosynthesis of 1 O O O O OP O O 1 Snider’s Retrosynthesis of 1 O O O OP O O (MeO)2P OP O 1 12 O O A Short Retrosynthetic Overview Maier’s and Georgiadis’ Retrosynthesis of Abyssomicin C O O O O O O O O TBSO O O O OP OH X OH OP OH O AcO O PO H O OR OAc O O HO TBSO O Rath, J.; Kinast, S.; Maier, M.E. Org. Lett. 2005. 7, 3089-3092. Zografos, A.L.; Yiotakis, A.; Georgiadis, D. Org. Lett. 2005. 7, 4512-4518. 13 Nicolaou’s Retrosynthesis O O O O O O O O O O O O O OH OH O OH CH3 O O CH 3 O AcO O OH CH3 O AcO O O O OH OH O OMe 14 Nicolaou, K.C.; Harrison, S.T. Angew. Chem. Int. Ed. 2006. 45, 3256-3260. Nicolaou, K.C.; Harrison, S.T. J. Am. Chem. Soc. 2007. 129, 429-440. OH O MeO O O HO MeOH O O 15 O But... O MeO D OH A:B:C:D=1.3:1.2:1.3:1.0 OH OMe 120º C O O MeO OCH3 OH C MeOH O Ward, D. E.; Abaee, M.S. Org .Lett. 2000. 2, 3937-3940. 16 OH OMe B OH O O A Examples from literature OH R1 MeO O OH B(OR2)2 R1 BOR2 O THF 16 h 25ºC Batey, R.A.; Thadani, A.N.; Lough, A.J. J. Am. Chem. Soc. 1999. 121, 450-45. OH OH OH R 49-67% AlMe 3 R dr 1:1-3:1 3 eq Bertozzi, F.; Olsson, R.; Frejd, T. Org. Lett. 2000. 2, 1283-1286. OH OH MgX O R O L.A. 17 OH OH 1) PhCH3 2) Me3N(O) 60-80% H2O endo:exo 2:1-9:1 8 examples 2 examples MeO R1 130 ºC 3h R 60% dr 9:1 1 example Stork, G.; Chan, T.Y. J. Am. Chem. Soc. 1995. 117, 6595-6596. Ward, D. E.; Abaee, M.S.Org .Lett. 2000. 2, 3937-3940. Ward’s Solution OH BrMgO MeMgBr Benzene 0-25ºC 18 O O MeO O O Br Mg O O 95% Ward, D.E.; Abaee, M.S. Org. Lett. 2000. 2, 3937-3940. An Early Attempt at Olefination O O KHMDS O2, P(OEt)3 O OH O OH LiOH O LiO HO 96% H3O+ O OH HO O OH HO HO O 19 O OH O OH O HO Nicolaou, K.C.; Harrison, S.T. J. Am. Chem. Soc. 2007. 129, 429-440. A Modified Julia-Olefination Strategy O OH 1) NaSPh O 2) MeOH, H2SO4 O OH MeO 71% 20 O OH MeO SPh 82% 1) H2O2 2) TMSCl, NEt3, DMAP O OTMS 1) LiHMDS, CH2ICI MeO 2) Na (Hg) 3) aq HCl, MeOH SO2Ph 72% OH Me2Zn Br O Mg 0 ºC 5min Zn O O 5 min 0 ºC MeMgBr HO HO 0 ºC 5min O MeO S- BINOL O Zn O O O O 95% yield 93% ee 21 O Mg Br O Ward, D.E.; Souweha, M. S. Org. Lett. 2005. 7, 3533-3536. The Disadvantages Stoichiometric amount of enantiopure BINOL and ZnMe2 in the first step of the synthesis. Synthesis had become lengthy (7 steps, 38% yield). O OH MeO 22 Asymmetric Borane Reduction O MeO N O 1.5eq PhSCH3 1.5 eq DABCO 1.5 eq n-BuLi Ph S 81% 1.1 eq catecholborane H Ph 0.1 eq Ph N O B O H O PhS H 30% 23 MeMgBr Me-(R)-CBS OH Methyl Acrylate S Ph Toluene 55 ºC 95% yield, 90% ee 30%!!!! Use of “sacrificial” alcohol resulted in no increase in yield. Lewis Acid scan produced no increase of the yield (TiCl4, AlCl3, Zn(OTf)2, MgBr2•OEt2/i-Pr2NEt). But...Remember that the enantioselective Diels-Alder Reaction was faster than the racemic version... 24 Bidentate Ligands Entry Auxiliary 1 2 None (±)-Binol Base/Metal Reaction Yield (%) Time1 (h) MeMgBr (1.0 eq) 24 30 MeMgBr (1.0 eq) 24 <5 Me2Zn (1.0 eq) MeMgBr (1.0 eq) 36 35 Me2Zn (1.0 eq) 3 OH 4 OH OH 5 NH2 OH MeMgBr (2.0 eq) 24 49 MeMgBr (2.0 eq) 48 55 MeMgBr (3.0 eq) 48 MeMgBr (4.0 eq) 12 70 6 80 N 6 7 1) 25 2eq “ 3 eq “ ” ” Time required for consumption of diene as monitored by NMR. The Proposed Transition State OH Ph S N MeMgBr Methyl Acrylate Mg Toluene 55 ºC O PhS O O Mg Br O MeOH O H O PhS 26 H 80% Julia-Type Reduction O OH O H LiHMDS; O2, P(OEt)3 O H PhS H 74% PhS O- O O O OTES 97% 27 O O O 2) aq NH4Cl 66 ºC 2h MeO 3) TESCl, Imidazole DMAP dtBB O [O] O CO OH2Me HO O 0.5 eq. dtBB 9.6 eq[O]Li MeI, K2CO3 PhO2S H 99% 1) t-BuOOH VO(OEt)3 2) Ac2O O OH O OAc HO 1)2.5 eq LiHMDS MeO H 1 hr -78 to 25 ºC O 88% O O O O OH 28 O Synthesis of The Coupling Partner HO OTBS SO3 Pyridine DCM:DMSO (2:1) O OTBS 2 eq MgBr THF -78 ºC O OPMB 84% 29 1) NaH, PMBCl, TBAI, DMF 2) HCl, MeOH 3) SO3 Pyridine, DCM:DMSO (2:1) OTBS OH 74% (two steps) O OH O 1) t-BuLi, THF 2) O O OPMB O O O OTES OPMB OTES 61% 3 eq DDQ DCM: NaHCO3 saturated (10:1) OH 5 mol% mol% Grubbs Grubbs 2 2 HO O Various homodimerised and 5 polymerised by-products O O OTES 30 HO OH O O O OTES 96% HO HO OH O 1 mol% HCl MeOH 25 ºC, 1 h O O OH O O O OH 94% OTES 5 mol% Grubbs 2 OH O Covers O blue O O IBX MnO2 OH 31 O OH HO O O O O OH 78% Dess-Martin PDC Swern O O O O A New Approach OH AcO O O O 1) 1.2 eq t-BuLi 2) O AcO O O O O AcO O IBX DMSO 25 ºC 45 min O O OTES OTES 90% OTES 75% 5 eq (CH2SH)2 5 eq BF3 OEt2 DCM, 12 h S S HO O O O OH 90% 32 S S AcO O 3.4 eq K2CO3 MeOH 25 ºC O O OH 90% S S HO O O O OH S S HO 1) IBX 2) MgBr O 5 mol% Grubbs 2 O O OH 65% HO S S HO O 2.5 eq IBX DMSO O H OH 85% S S O O HO O O HO O O H H 33 3 eq PhI(OTFA)2 O CH3CN/H2O (10:1) 25 ºC 10 min OH 73% OH 50% 5.6% overall yield, 19 steps from Weinreb Amide The NMR did not match that of the previously isolated natural compound. After 18 hours in CDCl3 a new set of peaks appeared. The new peaks matched those of the previously isolated abyssomicin C. O MeO 34 N Generation of Possible Atropisomers HO H O LnRu H H O S S O 5 mol% Grubbs 2 0.002M DCM 40 ºC 1hr N Mes Cl Ru Cl Ph PCy3 O O [re] O LnRu O H O O HO H OH S S HO si approach S S OH re approach O O S S O H O O HO LnRu H [si] OH 35 O Mes N OH HO O O O H S S HO S S OH OH 36 Nicolaou and Harrison J. Am. Chem. Soc. 2006, 129, 430-440. The Differences O O O H O O CDCl3 O O O H O O OH OH 2 1 O O O H O O OH 1 37 CDCl3 O O O H O O OH 2 Nicolaou and Harrison J. Am. Chem. Soc. 2006, 129, 430-440. Nicolaou’s Proposed Mechanism O O O H+ O O O O O O OH H+ O O O OH 38 O O O O O O H O OH O O O+ O+H O O O OH H+O O O O O O+ O H O OH O OH O O O O OH H O O O O O O OH HO OH O H+ O O O O O OH OH OH O OH O O O O O O HO OH O O+H OH O O CDCl /HCl 3O O O O O+ O O H+ O O OH O Biosynthetic Ramifications O O O L-selectride O O O OH atrop-abyssomicin C O O O O L-selectride O OH abyssomicin C 39 -O O H O H3O+ HO O O H O O OH OH Abyssomicin D Z-enolate OO H O O H3O+ O OH E-enolate O HO O O H O O O O OH O H O O OH Iso-abyssomicin D Figure modified from Nicolaou et Harrison J. Am. Chem. Soc 2007. 129, 429-440. H H O Biosynthetic Ramifications NH2 N HO % Starting Material Remaining O Abyssomicin C OH OH NADH EtO2C Me Atrop-abyssomicin C CO2Et N H Me Time (h) 40 Figure modified from Nicolaou et Harrison J. Am. Chem. Soc. 2007. 129, 429-440. Minimum Inhibitory Concentrations for the analogues O O H O O O H O H O O O H S S O O O H O O O H O H O O O H OAc OH OH OH Abyssomicin C atrop-Abyssomicin C Ac-Abyssomicin C Dithiane 20 µM 20 µM 15 µM atrop-Abyssomicin C 70 µM S O O S O O HO O O H O O H MeO O O O H C OH OH -O O COOOH >500 µM >500 µM Dithiane-hydroxy Abyssomicin C >500 µM 41 OH Proposed Mechanism of Action 42 Figure adapted from Parsons, J. F. et. al. Biochem. 2002. 41, 2198-2208. Narrowing the Search Ser266 Thr270 Thr276 Cys263 Ser256 Ser254 Ser422 Cys421 43 Active Site OO CC -O -O Ser342 Thr343 Thr345 OO COO- COO OH OH Thr408 Thr411 Ser366 Thr368 Cys391 Ser393 Identifying the nucleophile 44 Keller, H. et. al. Angew. Chem. Intl. Ed. 2007. 46, 8284-8286. O HO H O O O H O O Cys O -O O O Cys O O O Cys OH O OH OH OH HO O O Cys SH HO SH HN O 45 CO2H OH O Minimum Inhibitory Concentrations for the analogues O O H O O O H O H O O O H S S O O O H O O O H O H O O O H OAc OH OH OH Abyssomicin C atrop-Abyssomicin C Ac-Abyssomicin C Dithiane 20 µM 20 µM 15 µM atrop-Abyssomicin C 70 µM S O O S O O HO O O H O O H MeO O O H OH OH OH >500 µM >500 µM Dithiane-hydroxy Abyssomicin C >500 µM 46 In Conclusion Examined the Folate Biosynthesis pathway. Examined Nicolaou’s application and modification to Ward’s LACASA approach to Diels-Alder Reactions using an allylic alcohol diene. Delved into Nicolaou’s Approach for the total synthesis of Abyssomicin C. Demonstrated how Nicolaou’s synthetic work uncovered the potent inhibitor, atrop-abyssomicin C, leading to a better understanding of the abyssomicin mechanism of action. 47 Acknowledgements Roger Tam Pawel Czechura Jennifer Chaytor Elisabeth Von Moos Tahir Rana Wendy Campbell Sandra Ferreira Ruoying “Gloria” Gong Jaqueline Tokarew Ivan Petrov Dr. Michael Souweha Dr. Matthieu Leclere Dr. Robert Ben And NSERC for providing funding to make this possible 48 Couladouros’ Retrosynthesis of 2 O O MeO O O OH O HOMeO OH O MeO O O O 2 I 3 4 AcO O AcO O O OH MeO O O O O O O OMe OMe 49 O EtO2C CO2Et 5 O OMe O Synthesis of Building Block 5 (NMe2)2CHOMe MeO MeO O NaCNBH4 O MeO O O O O N N MeI MeO MeO O O 5 NaHCO3 O O NMe3 Takeda et al. J. Org. Chem. 1987, 52, 4135-4137 50 Synthesis of 4 65% total yield CO2Et 1) NaOEt 25ºC 2) HCl, AcOH 105ºC EtO2C 3) Ac2O, reflux O O OMe O 7 O O : O 3 NEt3, THF, Reflux AcO O (COCl)2, DMSO AcO DCM NEt3 51 OH O 1) LiAlH4, THF 0ºC 2) AcOCHCH2, Amino Lipase AK THF 0ºC Putting The Pieces Together MeO O O 5 AcO 1) LDA, THF -100 C OH MeO 2) O AcO 4 O O 45-58% 1) IBX DMSO HO 2) Novozyme 435, Toluene phosphate buffer O IBX DMSO MeO HO O 70% MeO O O O 41% O I CrCl2 HO O MeO O O 52 Putting The Pieces Together Take 2 MeO O AcO 1) LDA, THF -100 C O 5 OH MeO 2) O O AcO TBSCl Imidazole DMF AcO MeO O O 45-58% 4 OTBS HO Guanidine HCl EtOH/4M NaOH OTBS MeO O O O 85% 78% 1) IBX DMSO 2) CrCl2, NiCl2 THF/DMSO I O O O O O O O O O O Toluene 100ºC 70% O O O 53 O O OMe I O I- O O OMe OTBS MeO I2 OMe I O OMe I HO O MeO 1) TBAF, THF O O 2) IBX, DMSO 44% O O O 1 eq DMDO OMe Acetone 0º-23ºC 18 h O O O O O OMe 67% O 10 eq. LiCl DMSO 50ºC O O O O OH 50% 54 O 1.2 eq. PTSA 5 eq. LiCl AcN 50ºC 2h. O O O O OH O quantitative Synthesis of Vinyl Iodide 3 O Entry 1 1 22 33 1 I Conditions Solvents E/Z Yield (%) CrCI2, CH3I, 0°C CrCI2, CH3I, 0°C Ph3P+(I-)CH2I, NaHMDS, -78°C THF THF:Dioxane; 6:1 THF 2:1 2:1 1.2:1 85 75 87 Takai’s Conditions (Takai, K. et al. J. Am. Chem. Soc. 1986, 108, 7408-7410. Evans’ Conditions (Evans, D.A. et al. J. Am. Chem. Soc.1993, 115, 4497-4513. 3 Stork’s conditions (Stork, G. et al. Tet. Lett. 1989, 30, 2173-2174. 2 55 Isomerisation Conditions O O O H O O CDCl3 OH 1 Entry 1 2 3 4 5 6 7 8 9 56 Conditions Unstabalised CDCl3 Xylenes 180°C TFA/DCM (1:1) 1 eq. BF3• OEt2 DCM 1 eq. CSA, DCM 1 M aq HCl:THF (3:1) 1M HCl in Et2O (0.2 eq.)/d6-THF 1M HCl in Et2O (0.2 eq.)/CDCl3 1 eq. p-TsOH, 5 eq. LiCl CD3CN, 50°C O O O H O O OH 2 Time (h) 24 12 24 24 24 24 1 1 2 Ratio (1:2) 2:1 No isomerisation No isomerisation No isomerisation No isomerisation No isomerisation 1.0:1.6 2.5:1.0 1.0:2.0 Isolation and Identification Isolated in 2004 by Süssmuth from an actinomycete of genus Verrucosipora, discovered in a sediment sample from the Japanese Sea. Investigated because of pABA inhibition identified by an agar-plate diffusion assay Structure determination by NMR and X-Ray 57 Whoopdeedoo Folic acid, Vitamin B12 is an essential vitamin. Not synthesised in vertebrates Fungi, Bacteria, Plants, Achaea, and insects and anthropods all synthesise it. So it has the possibility of providing broad spectrum antibiotics. Sulfonamides and Trimethoprim are existing antibiotics that inhibit the Folate Synthesis Pathway 58 Andrus’ Lactone 59 Agar Plate Diffusion Assay Screened 930 extracts. Lives 60 No Activity Dies Metabolic Activity B. subtilis in simple medium B. subtilis in complex medium Dies Lives General Toxin Riedlinger, J. et al. J. Antibiotics. 2004. 57, 271-279 pAba+Trp +Phe+Tyr Verrucosispora AB-18-032 Phe+Tyr B. Subtilis in simple medium pAba Trp 61 ibid Borane Transition State Ph Ph N O B Me O L2B H SPh 62 A Shorter Route AcO O O 1) 1.2 eq. t-BuLi 2) O AcO O AcO OH O O O O O IBX DMSO 25ºC 45 min O O OTES 1.2 eq t-BuLi 1.1 eq O HO O O OTES 63 5 eq(CH2SH)2 5 eq BF3 OEt2 DCM 12 h O S S HO O O OTES 90% OTES 75% O (CH2SH)2 TMSOTf O O OH 76% over 2 steps S S AcO O 3.4 eq K2CO3 MeOH 25ºC O O OH 90% O O O O Kinetic Studies O OH Irreversible Inhibition: KIapp=390μM; kinact=0.8 min-1 O O O O O OH 64 Keller, H et. al. Angew. Chem. Intl. Ed. 2007. 46, 8284-8286 Ward’s DA evidence 65