Topic 2: Cells 2.1.1 Outline the cell theory. Discuss the theory that living organisms are composed of cells. The Cell Theory states that: – All organisms are composed of one or more cells. – All cells arise from pre-existing cells. – All vital functions of an organism occur within cells. – Cells are the most basic unit of life. – Cells contain hereditary information. Why? 2.1.2 Discuss the evidence for the cell theory. What is Evidence? What is a theory? Evidence for Cell theory: – Living tissues= composed of cells – Cells of an organism can sometimes survive on their own but smaller cell components can NOT. – Classic experiments showed that spontaneous generation of life= impossible. The cell theory has amassed tremendous credibility through the use of the microscope in the following: Robert Hooke- studied cork and found little tiny compartments that he called cells Antonie Van Leeuwenhoek- observed the first living cells, called them 'animalcules' meaning little animals Schleiden- stated that plants are made of 'independent, separate beings' called cells Schwaan- made a similar statement to Schleiden about animals When scientists started to look at the structures of organisms under the microscope they discovered that all living organisms where made up of these small units which they proceeded to call cells. When these cells were taken from tissues they were able to survive for some period of time. Nothing smaller than the cell was able to live independently and so it was concluded that the cell was the smallest unit of life. For some time, scientists thought that cells must arise from non-living material but it was eventually proven that this was not the case, instead they had to arise from pre-exsisting cells. An experiment to prove this can be done as follows: Take two containers and put food in both of these Sterilize both of the containers so that all living organisms are killed Leave one of the containers open and seal the other closed What will happen is that in the open container mold will start to grow but in the container that was sealed no mold will be present. The reason for this is because in the open container, cells are able to enter the container from the external environment and start to divide and grow. However, due to the seal on the other container no cells will be able to enter and so no mold will develop, proving that cells cannot arise from non-living material. Exceptions to aspects of the theory? Skeletal muscle – multinucleate cytoplasm Some fungal hyphaemultinucleate cytoplasm. Extracellular material (material outside the cell membrane), such as teeth and bone, forms a significant part of the body. Some biologists consider unicellular organisms to be acellular. Do you think these constitute exceptions to cell theory? Justify your answer. Note: this slide=not in new syllabus… 2.1.3 State that unicellular organisms carry out all the functions of life. Discussion: What are the necessary functions of life? C—Made of one or more than on cell H—Maintain Homeostasis E—Metabolize energy D—Made of DNA D—Develop and Grow A—Adapt R—Reproduce S—Respond to stimuli 2.1.4 Compare the relative sizes of molecules, cell membrane thickness, viruses, bacteria, organelles and cells, using appropriate SI units. “Molly Membrane’s Virus Backed Off Most Cells” Molecules (1 nm) (Smallest) Cell membrane thickness (10 nm) Viruses (100 nm) Bacteria (1 µm) Organelles (<10 µm) Most cells (<100 µm) (Largest) Interactive http://www.cellsalive.com/howbig.htm 2.1.5 Calculate linear magnification of drawings. – Drawings should show cells and cell ultrastructure. Include: – A scale bar: |------| = 1 µm – Magnification: ×250 To calculate magnification: – Magnification = Measured Size of Diagram ÷ Actual Size of Object 2.1.6 Explain the importance of the surface area to volume ratio as a factor limiting cell size. – The rate of exchange of materials (nutrients/waste) and energy (heat) is a function of its surface area. (Why?) – As cell size increases, the surface area to volume ratio decreases This can make the exchange rate inadequate for large cells – Cell size, therefore, remains small 2.1.7 State that multicellular organisms show emergent properties. Multicellular organisms show emergent properties. For example: cells form tissues, tissues form organs, organs form organ systems and organ systems form multicellular organisms. The idea is that the whole is greater than the composition of its parts. For example your lungs are made of many cells. However, the cells by themselves aren’t much use. It is the many cells working as a unit that allow the lungs to perform their function. Define tissue, organ and organ system. Tissue: An integrated group of cells that share stucture and are adapted to perform a similar function. Organ: A combination of two or more tissues which function as an integrated unit, performing one or more specific functions. Organ system: A group of organs that specialize in a certain function together. 2.1.8 Explain that cells in multicellular organisms differentiate to carry out specialized functions by expressing some of their genes but not others. – Differentiation: becoming specialized in structure and function. – Supporting examples? – Multicellular organisms show emergent properties (What??) See Previous slide… Video: http://www.pbs.org/wgbh/nova/sciencenow/archive/title-m-z.html 2.1.9 State that stem cells retain the capacity to divide and have the ability to differentiate along different pathways. Stem cells – Retain the capacity to divide – Have the ability to differentiate along different pathways. Therapeutic Use: – Many possibilities Repair of damaged tissue – Actual uses Restore neural insulation tissue in rats. Use of umbilical cord blood stem cells for leukemia patients. – Sources and ethical issues: Embryonic placenta/umbilical cord Many other tissues have stem cells Pluripotent vs. totipotent/omnipotent Video: http://www.pbs.org/wgbh/nova/sciencenow/archive/title-m-z.html 2.1.10 Outline one therapeutic use of stem cells. Bone marrow transplants are one of the many therapeutic uses of stem cells. Stem cells found in the bone marrow give rise to the red blood cells, white blood cells and platelets in the body. These stem cells can be used in bone marrow transplants to treat people who have certain types of cancer. When a patient has cancer and is given high doses of chemotherapy, the chemotherapy kills the cancer cells but also the normal cells in the bone marrow. This means that the patient cannot produce blood cells. So before the patient is treated with chemotherapy, he or she can undergo a bone marrow harvest in which stem cells are removed from the bone marrow by using a needle which is inserted into the pelvis (hip bone). Alternatively, if stem cells cannot be used from the patient then they can be harvested from a matching donor. After the chemotherapy treatment the patient will have a bone marrow transplant in which the stem cells are transplanted back into the patient through a drip, usually via a vein in the chest or the arm. These transplanted stem cells will then find their way back to the bone marrow and start to produce healthy blood cells in the patient. Therefore the therapeutic use of stem cells in bone marrow transplants is very important as it allows some patients with cancer to undergo high chemotherapy treatment. Without this therapeutic use of stem cells, patients would only be able to take low doses of chemotherapy which could lower their chances of curing the disease . When a patient has cancer and is given high doses of chemotherapy, the chemotherapy kills the cancer cells but also the normal cells in the bone marrow. This means that the patient cannot produce blood cells. So before the patient is treated with chemotherapy, he or she can undergo a bone marrow harvest in which stem cells are removed from the bone marrow by using a needle which is inserted into the pelvis (hip bone). Alternatively, if stem cells cannot be used from the patient then they can be harvested from a matching donor. After the chemotherapy treatment the patient will have a bone marrow transplant in which the stem cells are transplanted back into the patient through a drip, usually via a vein in the chest or the arm. These transplanted stem cells will then find their way back to the bone marrow and start to produce healthy blood cells in the patient. Therefore the therapeutic use of stem cells in bone marrow transplants is very important as it allows some patients with cancer to undergo high chemotherapy treatment. Without this therapeutic use of stem cells, patients would only be able to take low doses of chemotherapy which could lower their chances of curing the disease. 2.1.10 - Outline one use of therapeutic stem cells . 1.Non-Hodgkins Lymphoma is a cancerous disease of the lymphatic system: Outline of the disease: 1. patient requires heavy does of radiation and or chemotherapy. This will destroy health blood tissue as well as the diseased tissue. 2. Blood is filtered for the presence of peripheral (blood-forming) stem cells. Cells in the general circulation that can still differentiate into different types of blood cell otherwise known as stem cells. 3. Bone marrow can be removed before treatment. 4. Chemotherapy supplies toxic drugs to kill the cancerous cells. 5. Radiation can be used to kill the cancerous cells. In time however the cancerous cells adapt to this treatment so that radiation and chemotherapy are often used together. 6. Post radiation/ chemotherapy means that the patients health blood tissues is also destroyed by the treatment. 7. Health stem cells or marrow cells can be transplanted back to produce blood cells again Bone marrow transplants only work because what you are actually transplanting is the hematopoietic (blood cells that give rise to all the other blood cells) stem cells in the marrow. peripheral blood stem cells-- method of replacing blood-forming stem cells destroyed, for example, by cancer treatment. Immature blood cells hematopoietic (blood cells that give rise to all the other blood cells) stem cells in the circulating blood that are similar to those in the bone marrow are collected by apheresis from a potential donor. Cord blood stem cells, can be used in lieu of bone marrow, making being a donor FAR easier today than in decades past. 2.2.1 Draw and Label a diagram of the Ultrastructure of Eschrichia coli (E. coli) as an example of a Prokaryote Draw a generalized prokaryotic cell as seen in electron micrographs The diagram should include: – the cell wall, – plasma membrane, – cytoplasm, – Pili – Flagella – Ribosomes – nucleoid ( region containing naked DNA). 2.2.2 Anotate the diagram from 2.2.1 with the function of each named structure Cell Wall: Maintains the cell's shape and give protection. Plasma Membrane: Regulates the flow of materials (nutrients, waste, oxygen, etc.) into and out of the cell. Mesosome: A tightly folded region of cell membrane. (has attached proteins for respiration/photosynthesis) Cytoplasm: Holds and suspends the cell's ribosomes and enzymes. Region where glycolysis occurs. Ribosome: Protein synthesis. Nucleoid region: Contains the cell's genetic material (naked DNA) Slime capsule: Used as energy storage Flagella: Mobility Pili: Interacting with other cells Plasmid: Extra DNA which helps with adaptations to the environment 2.2.3 Identify the structures from 2.2.1 in electron micrographs of E.Coli 2.2.4 State that prokaryote cells divide by Binary Fission Prokaryotic cells divide by binary fission – Asexual – splits directly into two equal-sized offspring, each with a copy of the parent's genetic material. FYI for future reference State that prokaryotes show a wide range of metabolic activity including fermentation, photosynthesis and nitrogen fixation. EX. Cyanobacteria (blue-green algae)--photosynthesis. Bacteria can convert organic substances into other organic substances. (i.e., glucose to lactic acid during anaerobic respiration) Nitrogen fixation– convert N2 in air to ammonia. Cyanobacteria Video: http://www.pbs.org/wgbh/nova/sciencenow/3 401/04.html Bacteria Harvard Animation Why are cells cool? http://multimedia.mcb.harvard.edu/ Eukaryotic Cells 2.3.1Draw a diagram to show the ultrastructure of a generalized animal cell (liver cell) as seen in electron micrographs. Should include free ribosomes rough smooth ER Lysosome Golgi apparatus mitochondria nucleus. An Animal Cell Define organelle. An organelle is a discrete structure within a cell, and has a specific function. 2.3.2 Annotate the diagram from 2.3.1 with the funciton of each named structure – mitochondrion – golgi body – endoplasmic reticulum – vacuole – lysosome – ribosome In contrast to the other organelles, they are not surrounded by a membrane. – centriole (Unique to animal cells) – chloroplast EUKARYOTE CELL ULTRASTRUCTURE Practice: What are the respective magnifications of the cell as a whole and of each of its organelles in the following cell picture? Summary of the major cell organelles: ORGANELLE MAIN FUNCTIONS DIMENSIONS Nucleus Cell division, protein synthesis 10 µm diameter Mitochondrion Respiration pathways Chloroplast Photosynthetic pathways Lysosome Digestion, recycling & isolation Golgi apparatus Secretion, reprocessing, lysosome synthesis Cisternae: 0.5µm thick, l3µm diameter Endoplasmic Reticulum (ER) Support, Golgi apparatus synthesis. 26 to 56 nm thick Ribosome Protein synthesis 1.0 to 12.5 µm 5 to 10 µm diameter 0.5 to 3.0 µm diameter 20 nm diameter State one function of each of these organelles: ribosomes, rough endoplasmic reticulum, lysosome, Golgi apparatus, mitochondrion and nucleus. Ribosomes: protein synthesis Rough endoplasmic reticulum (rER): Packages proteins Lysosome: digests old cell parts, macromolecules (food) and engulfed viruses/bacteria Golgi apparatus: Modifies, stores and routes products of the endoplasmic reticulum. Mitochondrion: cellular respiration. Nucleus: contains genetic material –transcription occurs here. Ribosomes: Found either floating free in the cytoplasm or attached to the surface of the rough endoplasmic reticulum and in mitochondria and chloroplast. Ribosomes are the site of protein synthesis as they translate messenger RNA to produce proteins. Rough endoplasmic reticulum: Can modify proteins to alter their function and/or destination. Synthesizes proteins to be excreted from the cell. Lysosome: Contains many digestive enzymes to hydrolyze macromolecules such as proteins and lipids into their monomers. Golgi apparatus: Receives proteins from the rough endoplasmic reticulum and may further modify them. It also packages proteins before the protein is sent to it’s final destination which may be intracellular or extracellular. Mitochondrion: Is responsible for aerobic respiration. Converts chemical energy into ATP using oxygen. Nucleus: Contains the chromosomes and therefore the hereditary material. It is responsible for controlling the cell. Transcription occurs here. 2.3.3 Identify structures from 2.3.1 in electron micrographs of liver cells 1. 2. 3. 4. 5. Nucleus Mitochondria Cell border Nucleoli Red blood cell Another example Prokaryotic cells vs. Eukaryotic cells Contain naked DNA vs. DNA associated with protein DNA in cytoplasm vs. DNA enclosed in a nuclear envelope No membrane-enclosed organelles vs. membrane-enclosed organelles (e.g., mitochondria, chloroplasts) 70S vs. 80S ribosomes No mitochondria vs. Mitochondria Circular DNA vs. Linear DNA Flagella lack internal microtubules vs. Flagella have microtubules. No mitosis/Meiosis (Reproduce via Binary fission vs. Mitosis/Meiosis 2.3.5 State three differences between plant and animal cells. Only plant cells have: Cell walls Chloroplasts Large central vacuoles and tonoplast Plasmodesmata (microscopic channels which traverse the cell walls of plan cells and some algal cells, enabling transport and communication between them Starch granules for storage of carbohydrates Only animal cells have: Centrioles Lysosomes—careful, I have read where some plants have lysosomes. Glycogen for storage of carbohydrate Also: Plant cells usually have much less cholesterol in their plasma membranes. Remember--Cholesterol is required to build and maintain membranes; it modulates membrane Said a little differently Animal cells only have a plasma membrane and no cell wall. Whereas plant cells have a plasma membrane and a cell wall. Animal cells do not have chloroplasts whereas plant cells do for the process of photosynthesis. Animal cells store glycogen as their carbohydrate resource whereas plants store starch. Animal cells do not usually contain any vacuoles and if present they are small or temporary. On the other hand plants have a large vacuole that is always present. Animal cells can change shape due to the lack of a cell wall and are usually rounded whereas plant cells have a fixed shape kept by the presence of the cell wall. 2.3.6 Outline two roles of extracellular components Animal cells – Extracellular matrix (secreted glycoproteins) Support Adhesion Movement 2.3.6 Outline two roles of extracellular components Plant cell wall – Main component= cellulose Cellulose molecules are arranged in bundles give the cell wall great tensile strength and allow high pressures to develop inside the cell. Functions= structure, support, protection. …State the composition and function of the plant cell wall. (Just an FYI—not an IB component) Three layers: – middle lamella (between adjacent cells– attachment) – primary cell wall – secondary cell wall (stronger– has lignin for strength) Functions= structure, support, protection. Membranes 2.4.1 Draw a diagram of the fluid mosaic model. http://www.youtube.com/watch?v=Qqsf_UJcfBc Diagram should show – the phospholipid bilayer, – cholesterol, – glycoproteins, – Integral proteins – peripheral proteins. – Be sure you use the term “phospholipid bi-layer, NOT cell membrane 2.4.2 Explain how the hydrophobic and hydrophilic properties of phospholipids help to maintain the structure of cell membranes. Hydrophilic -”water loving” -phosphate heads Hydrophobic -”water-fearing” -fatty acid tails Phospholipid molecules make up the cell membrane and are hydrophilic (attracted to water) as well as hydrophobic (not attracted to water but are attracted to other hydrophobic tails). They have a hydrophilic phosphate head and two hydrophobic hydrocarbon tails. Cell membranes are made up of a double layer of these phospholipid molecules. This is because in water the hydrophilic heads will face the water while the hydrophobic tails will be in the center because they face away from the water. The phospholipid bilayer makes the membrane very stable but also allows flexibility. The phospholipid in the membrane are in a fluid state which allows the cell to change it’s shape easily. Functions of membrane proteins Hormone binding sites. Enzymes Cell adhesion – Attachment to the cytoskeleton and extracellular matrix Cell communication – Signal transduction – Cell-cell recognition Channels for passive transport Pumps for active transport. Electron carriers Define diffusion Diffusion: the passive movement of particles from a region of higher concentration to a region of lower concentration, as a result of the random motion Animation of particles. http://www.indiana.edu/~phys215/lecture/lecn es/lecgraphics/diffusion2.gif Define Osmosis Osmosis: the passive movement of water molecules, across a selectively permeable membrane, from a region of lower solute concentration to a region of higher solute concentration. (i.e. the diffusion of water) Remember: Lowers solute concentration = higher water concentration!!! Hypertonic (hyperosmotic) Hypotonic (hypoosmotic) Isotonic (isoosmotic) http://www.tvdsb.on.ca/westmin/sci ence/sbi3a1/Cells/Osmosis.htm effect of osmosis on cell animation 2.4.5 Explain passive transport across membranes in terms of diffusion. Simple diffusion facilitated diffusion. – No ATP used – Channel proteins (integral membrane proteins) – Down concentration/electrochemical gradient – Specific ex. Ion Channels in neurons 2.4.6 Explain the role of protein pumps and ATP in active transport across membranes. Active transport is the movement of substances across membranes using energy from ATP. – moves substances against a concentration gradient. Active transport animations:http://www.bbc.co.uk Carrier proteins– protein pumps Types of transport 2.4.6 Active transport involves the movement of substances through the membrane using energy from ATP. The advantage of active transport is that substances can be moved against the concentration gradient, meaning from a region of low concentration to a region of high concentration. This is possible because the cell membrane has protein pumps embedded it which are used in active transport to move substances across by using ATP. Each protein pump only transports certain substances so the cell can control what comes in and what goes out. 2.4.7 Explain how vesicles are used to transport materials within a cell between the rough endoplasmic reticulum, Golgi apparatus, and plasma membrane. Proteins synthesized by ribosomes enter the rough endoplasmic reticulum to be modified Vesicles bud from rER and carry the proteins to the Golgi apparatus. Golgi apparatus modifies the proteins. Vesicles bud off from the Golgi apparatus and carry the modified proteins to the plasma membrane – This is a process called exocytosis. Endocytosis is a similar process which involves the pulling of the plasma membrane inwards so that the pinching off of a vesicle from the plasma membrane occurs and then this vesicle can carry its content anywhere in the cell. Describe how the fluidity of the membrane allows it to change shape, break and reform during exocytosis. In exocytosis vesicles fuse with the plasma membrane. The contents of the vesicles are then expelled. The membrane flattens out again. animations:http://www.bbc.co.uk/education/asguru/biology /01cellbiology/05pathways/09endoexo/index.shtml In Describe how the fluidity of the membrane allows it to change shape, break and reform during endocytosis endocytosis part of the plasma membrane is pulled inwards. A droplet of fluid becomes enclosed when a vesicle is pinched off. Vesicle can then move through the cytoplasm carrying its contents. Cell Division State that the celldivision cycle involves interphase, mitosis, and cytokinesis. New cells are produced by the division of existing cell, remember the cell theory. Interphase: DNA replication and transcription occurs. Also, normal cell life. Mitosis: Cell begins to divide. Cytokinesis: The cell finishes dividing and the cytoplasm splits between them. Mitosis 2.5.1Outline the stages in the cell cycle Must include – Interphase (G1, S, G2) – Mitosis – Cytokinesis 2.5.1 The first stage of cell division is interphase which is divided into 3 phases; G1, S and G2. The cell cycle starts with G1 (Gap phase 1) during which the cell grows larger. This is followed by phase S (synthesis) during which the genome is replicated. Finally, G2 (gap phase 2) is the second growth phase which separates the newly replicated genome and marks the end of interphase. 2.5.1 The fourth stage is mitosis which is divided into prophase, metaphase, anaphase and telophase. During mitosis the spindle fibers attach to the chromosomes and pull sister chromatids apart. This stage separates the two daughter genomes. Finally, cytokinesis is the last stage during which the cytoplasm divides to create two daughter cells. In animal cells the cell is pinched in two while plant cells form a plate between the dividing cells. 2.5.2 State that tumours (cancers) are the result of uncontrolled cell division and that these can occur in any organ or tissue. Tumors are formed when cell division goes wrong and is no longer controlled. This can happen in any organ or tissue. 2.5.3 State that interphase is an active period in the life of a cell when many metabolic reactions occur, including protein synthesis, DNA replication and an increase in the number of mitochondria and/or chloroplasts. Interphase continued… Phases of Interphase – G1 = growth of cell, protein synthesis – S = replication of DNA – G2 = growth of cell, increase in organelles, preparation for cell division. 2.5.4 Describe the events that occur in the four phases of mitosis… Prophase the mitotic spindle (made from microtubules) starts growing (going from pole to pole). Chromatin coils up to form distinct chromosomes. (Each chromosome contains two identical sister chromatids, attached to each other at the centromere region.) The nuclear envelope starts breaks down. …Describe the events that occur in the four phases of mitosis… each chromosome attaches to two spindle microtubules (one going to each pole) at the centromere. line up at the equator mitotic spindle is fully developed some microtubules are attached to chromosomes and reach to the equator; others go from pole to pole. …Describe the events that occur in the four phases of mitosis… Anaphase – the spindle microtubules pull the sister chromatids to opposite poles – each sister chromatid becomes one new chromosome of the daughter cell. Telophase – each sister chromatid reaches its pole (becoming a chromosome). – nuclear envelope starts to reform. Spindle microtubles deteriorate. Cytokinesis (division of the cytoplasm) takes place. Summary of Mitosis Summary of mitosis continued 2.5.5 Explain how mitosis produces two genetically identical nuclei. (an IB standard) Mitosis is divided into four stages; prophase, metaphase, anaphase and telophase. During prophase, the chromosomes become visible under a light microscope as they super coil and therefore they get shorter and more bulky. The nuclear envelope disintegrates and the spindle microtubules grow and extend from each pole to the equator. At metaphase the chromatids move to the equator. The sister chromatids are two DNA molecules formed by DNA replication and are therefore identical. These sister chromatids are then separated in anaphase as the spindle microtubules attaches to centromere and pulls the sister chromatids to opposite poles. As the sister chromatids separate they are called chromosomes. This means that each pole has the same chromosomes (same genetic material). Finally the microtubules break down, the chromosomes uncoil and the nuclear membrane reforms. The cell then divides into two daughter cells with genetically identical nuclei. 2.5.6 State that growth, embryonic development, tissue repair, and asexual reproduction involve mitosis. Greater Tracy Area Outline the differences in mitosis and cytokinesis between animal and plant cells. (limit this to the lack of the centrioles in plant cells and the formation of the cell wall.) Animals: – Centrioles – No cell wall Plants: – No centrioles – Cell wall (cell plate) is formed between cells as vesicles transport cell wall materials to middle. State that tumors are the result of uncontrolled cell division and that these can occur in any organ. Cancer cells do not respond to cell cycle regulation Transformation– results from successive mutations – mutagens Tumor: benign (don’t spread) or malignant (do spread) – Clonal Metastasis – spreading of cancer cells to other areas http://www.pbs.org/wgbh/nova/cancer/ (Cancer Warrior– angiogenesis resources) http://www.pbs.org/wgbh/nova/cancer/progra m.html (Video: Cancer Warrior-- angiogenesis) http://www.pbs.org/wgbh/nova/cancer/grows.html End of IB stuff State that a virus is a non-cellular structure consisting of DNA or RNA surrounded by a protein coat. Characteristics of Viruses – not considered living – no metabolism. – Unable to reproduce without a host – Others? Explain three advantages of using light microscopes. – color instead of monochrome (black and white) images. – large field of view. – Facilitate preparation of sample material. – Allow for the examination of living material and the observation of movement. – Relatively inexpensive Outline the advantages of using electron microscopes. 1) higher resolution and magnification than light microscopes. – Resolution refers to the ability to distinguish two objects as seperate entities. – Magnification refers to the ability to increase the size of a viewed object. 2) May provide a three dimensional view. Scanning Electron Microscopes (SEM) provide images of the specimen's surface Transmission Electron Microscopes (TEM) provide images of a sample's interior. The resolution of an SEM is approximately half that of a TEM. TEM SEM