Genetics Mendel and the Gene Idea Multifactorial Inheritance Genotype does not rigidly define the phenotype, but a range of possibilities over which the environment can influence genes + environment & diet phenotype Phenotype depends on environment and genes Tree: leaves that vary in size, shape, and greenness, depending on exposure to wind and sun. Humans: nutrition influences height, exercise alters build, sun-tanning darkens the skin, and experience improves performance on intelligence tests. Identical twins: genetic equals, accumulate phenotypic differences as a result of their unique experiences. Environment contributes to the phenotype acidic soil basic soil Early Ideas about Heredity Before Mendel basic facts of heredity studied garden pea plant formed hybrids found recessive traits in some offspring Gregor Mendel father of genetics mentors - physics, botany quantified results subject - garden pea plant 1843 – entered monastery 1851-53 – studied at U of Vienna 1857 – began breeding pea plants Advantages of peas Mendel had strict control over which plants mated with which Each pea plant has male (stamens) and female (carpal) sexual organs. Mendel could allow selfpollination or also move pollen from one plant to another to cross-pollinate Mendel’s Seven Characters and Alleles Mendel’s Experimental Design self-pollinate crossed alternative traits to produce hybrids (hybrids expressed only dominant traits) hybrids were self-pollinated (produced 3:1 ratio) Reginald Crundall Punnett Punnett square Symbols P = parental generation F1 = first filial generation F2 = second filial generation Terminology homozygous homozygous dominant = RR homozygous recessive= rr heterozygous = Rr genotype and phenotype complete dominance Monohybrid Cross parental varieties differ in a single character character = flower color (using letter P) allelles purple, dominant (PP, Pp) white, recessive (pp) Flower Color (Pea plant) topveg.com/wp-content/uploads/2009/03/pea-flower-ambience-300x286.jpg Monohybrid Cross F1 purple (PP) X white (pp) dominant x recessive F1 are all purple (Pp) all Pp = hybrid Monohybrid Cross Ratio in F2 phenotypic ratio 3:1 3 dominant: 1 recessive PP & Pp are indistinguishable in complete dominance genotypic ratio 1:2:1 1 homozygous dominant (PP) 2 heterozygous (Pp) 1 homozygous recessive (pp) Testcross (Pedigree Analysis) to determine unknown genotype utilizes a homozygous recessive phenotypic ratio of offspring determines genotype F2 F1 P Example F2 75% are black (B_) 25% are brown (bb) B_ B_ B_ bb B B b bb B_ b BB Bb Bb bb F1 all black (Bb) B B b Bb Bb b Bb Bb Parent generation (P) Black Labrador (BB) Brown Labrador (bb) Mendel’s First Law "Law of Segregation" allele pairs separate during gametogenesis then randomly reform pairs at fertilization Dihybrid Cross parental varieties differ in two characters characters: seed color (Y) seed shape (R) seed color alleles yellow: dominant (YY, Yy) green: recessive (yy) seed shape alleles round: dominant (RR, Rr) wrinkled: recessive (rr) P: yellow/round X green/wrinkled F1 : dihybrid (YyRr) P1 F1 F2 : offspring (9:3:3:1) 9 Y_R_ 3 Y_rr 3 yyR_ 1 yyrr F2 How do I know my Punnett is done correctly? all four are homozygous on both genes look at the diagonals! all four are heterozygous on both genes (YyRr) Mendel’s Second Law "Law of Independent Assortment" each allele pair assorts independently from one another during gamete formation Patterns of Inheritance not described by Mendel still follow Mendel’s laws Incomplete dominance Codominance Pleiotropy Epistasis Polygenic inheritance Incomplete Dominance Blends are formed examples: Snapdragons Tay-Sachs disease Snapdragon Intermediate phenotype Red = CRCR Pink = CRCW White = CWCW Codominance Both alleles are expressed examples: Landsteiner blood groups shorthorn cattle (A x B = AB) (white x red = roan) calico cat (orange-yellow x black) Blood groups: Codominance & multiple alleles http://health.stateuniversity.com/article_images/gem_01_img0116.jpg Blood type Test coagulates when it has the antibody for that type of blood same happens with the Rh group Blood Genotypes IAIA IAi IBIB IB i IAIB ii homozygous heterozygous homozygous heterozygous Rh group functions independently by complete dominance rules: DD or Dd is Rh positive dd is Rh negative Blood type A Blood type B Blood type AB Blood type O Examples : IAiDd IBIBdd iiDD A+ BO+ Class Activity A X B = O is it possible? What are the genotypes of the parents? AB X O = O is it possible? Give the genotypes of the possible children Shorthorn Cattle Codominance Red White Roan Calico Cat Codominance B = black R = red XBXR black XB red XR Barr body Barr body is an inactive strand of DNA Pleiotropy single gene has multiple effects example: in Siamese cats, one gene causes abnormal fur pigmentation and esophoria (crossed-eyed) Waardenburg syndrome white forelock pale iris deafness http://dermatology.cdlib.org/123/case_presentations/waardenburg/1.jpg Epistasis one gene alters the expression of another that is independently inherited example: albinism in animals (mice) 9 B_ C_ = black 3 B_ cc = albino 3 bb C_ = brown 1 bb cc = albino 9:3:4 instead of 9:3:3:1 Polygenic Inheritance An additive effect of 2 or more genes on one character example skin pigmentation at least 3 genes hair color at least 4 genes Rule of Addition The probability of an event that can occur in 2 or more different ways is the sum of the separate probabilities of those ways Rule of multiplication Multiply individual probabilities to get overall probability Rules of Addition and Multiplication Female roll tongue (Rr) long eyelashes (Ll) cleft chin (Cc) Probability of having a Male no roll tongue (rr) short eyelashes (ll) cleft chin (Cc) daughter 2/4 (xx, xx, xy, xy) roll tongue 2/4 (Rr, Rr, rr, rr) long eyelashes 2/4 (Ll, Ll, ll, ll) cleft chin 3/4 (CC, Cc, Cc, cc) 2/4 x 2/4 x 2/4 x 3/4 = 24/256 = 9.375% Activity Eye color Tongue rolling small finger widow's peak hand clasping earlobe Hitchhiker's thumb PTC tasting The End dark/light yes/no crooked/straight yes/no right/left free/attached no/yes yes/no P_/pp R_/rr B_/bb W_/ww C_/cc A_/aa H_/hh D_/dd