Curriculum Vitae
Irina V. Dokukina
Physics Department
Clarkson University
Potsdam, 13699 NY, USA
Office Phone: 1-(315)-268-2354
E-mail: dokukina@clarkson.edu
Education
· (2007) Ph.D. in Physics and Mathematics (Cellular structures and calcium ions
signalling pathways: mathematical modelling), Department of Biophysics (in Faculty of
Biology), Lomonosov Moscow State University, Moscow, Russia
· (2004) Master Degree in Physics (Honours), Department of Computational Physics (in
Faculty of Physics), Lomonosov Moscow State University, Moscow, Russia
· (2004) Master Degree in Pedagogics (Honours), Faculty of Pedagogical Education,
Lomonosov Moscow State University, Moscow, Russia
· (2003) Extramural English Language course, Kitaigorodskaya Language School,
Moscow, Russia
Positions
· (August 2008 – present time) Research Associate, Physics Department, Clarkson
University, Potsdam, NY, USA
· (May 2007 – July 2008) Research Associate (remote collaboration), Department of
Computational Physics (in Faculty of Physics), Lomonosov Moscow State University,
Moscow, Russia
· (Apr. 2004 – Apr. 2007) Ph.D. student, Department of Computational Physics (in
Faculty of Physics), Department of Biophysics (in Faculty of Biology), Lomonosov
Moscow State University, Moscow, Russia
· (2001 – 2004) Student, Faculty of Pedagogical Education, Lomonosov Moscow State
University, Moscow, Russia
· (1998 – 2004) Student, Department of Computational Physics, (in Faculty of Physics),
Lomonosov Moscow State University, Moscow, Russia
Visiting position
July 2005 – September 2005
University: Lehigh University (Bethlehem, PA, US)
Supervisor: James D. Gunton – Joseph A. Waldschmitt Professor of Physics
Position: visiting research scientist
Project: modelling of intra- and intercellular calcium signalling
Research experience
Chemical kinetics modelling of intracellular processes, graph and network modelling of
intra- and intercellular processes, structural modelling of biological processes,
synchronization processes analysis, developing of multipoint network method of
mathematical modelling
Programming experience
MatLab (numerical modelling), Fortran, TeX, MS Office, Windows, Linux, Origin
(numerical processing of the experimental results)
Teaching experience (4 years teaching in University, undergraduate and graduate
students and 2 years teaching in High school)
· (2004-2007) Supervisor: “Associate degree work on Physics” for sophomores (8
works), Faculty of Physics, Lomonosov Moscow State University, Moscow, Russia
· (2004-2005) Instructor: “Programming, introduction in computer technology of
programming, informatics”, Faculty of Physics, Lomonosov Moscow State University,
Moscow, Russia
· (2004-2005) Supervisor: “Associate degree work on Programming for sophomores”
(50 works), Faculty of Physics, Lomonosov Moscow State University, Moscow,
Russia
· (2003-2004) Supervisor: “High school diploma work on Programming” (2 works),
Lyceum #1533 (of information technology), Moscow, Russia
· (Spring 2003) Instructor: Mini-course on “Convex figures” within the course of
T.V.Matveeva “Introduction in mathematical methods of measurement
interpretation”, Faculty of Physics, Lomonosov Moscow State University, Moscow,
Russia
· (Fall 2002) Instructor: Mini-course on “Geometrical similarity of triangles” within the
course of E.B.Gladkova “Geometry, Algebra and principles of Mathematical
analysis”, “Second School” Lyceum, Moscow, Russia
Awards
· Fellowship from European Calcium Society to attend ECS2006 meeting organized in
Illkirch from July 19th to July 22nd 2006 (2006)
www.ulb.ac.be/assoc/ecs/strasbourg_2006_fellow.html
· Graduated from Lomonosov Moscow State University with high distinction and gold
medal (2004)
· Finished high school (Lyceum #15, Sarov, Russia) with high distinction and gold medal
(1998)
· Diploma of IV International Festival “Gold needle” (Russian arts and crafts) for
individual workmanship in the field of national toy organized in Anapa from August 1st to
August 31st 1995 (1995)
Supplementary information
· Member of organizing committee of the International Conference “Mathematics,
Computer, Education” (2004-2007) www.mce.biophys.msu.ru
Publications: Peer Reviewed (3), Proceedings Volume (6), Tutorial (4)
PR. (peer reviewed publications in journals)
1. I. V. Dokukina, M. E. Gracheva, E. A. Grachev, J. D. Gunton. Role of network
connectivity in intercellular calcium signaling, Physica D (2008) Vol. 237, 745-754.
2. I. V. Dokukina, A. A. Tsukanov, M. E. Gracheva, E. A. Grachev. Influence of tissue
architecture on cell-to-cell calcium signaling in tissues. Biophysics (2008) Vol. 53, No. 2,
pp. 305-314 (Russian).
3. I. V. Dokukina, M. E. Gracheva, E. A. Grachev. Modulation of the Dynamics of
Mitochondrial Calcium by Buffer Cytosolic Proteins and Plasma Membrane Fluxes.
Moscow University Physics Bulletin (2007) Vol. 62, No. 2, pp. 86–89.
PV. (proceedings and other publications)
4. I. D. Zharkov, I. V. Dokukina, E. A. Grachev, M. E. Gracheva. Computer-aided design
of cellular systems with predefined properties, in Proceedings of the Fourteenth
International Conference “Mathematics, Computer, Education” (2007) Pushino, January
22-27, vol. 2, pp. 139-149 (Russian).
5. I. V. Dokukina. Cellular structures and calcium ions signalling pathways: mathematical
modelling. (2007) Ph. D. thesis, Moscow, Russia, 134 pages (Russian).
6. I. V. Dokukina. Modeling of nonlinear dynamics of signaling calcium in cell and
multicellular structures, in Proceedings of the Forth Scientific and Technical Conference
“Youth in Science” (2005) Sarov, November 1-3, pp. 54-60 (Russian).
7. A. A. Tsukanov, I. V. Dokukina, O. S. Petrova, E. A. Grachev, M. E. Gracheva.
Structure modeling in biophysics, in Proceedings of the Twelfth International Conference
“Mathematics, Computer, Education” (2005) Pushino, January 17-22, vol. 2, pp. 770778 (Russian).
8. I. V. Dokukina, E. A. Cheremukhin, L. D. Tjorlova, A. C. Slizkov, E. A. Grachev.
Computing experiment and problems of nonlinear dynamics in computer practical work,
in Proceedings of the Eleventh International Conference “Mathematics, Computer,
Education” (2004) Dubna, Russia, January 26-31, vol. 1, pp. 288-297 (Russian).
9. I. V. Dokukina, E. A. Cheremukhin, E. A. Grachev. Procedure of training second-year
students of physical specialityes for implementation of student thesis in computer
practical work, in Proceedings of the Eleventh International Conference “Mathematics,
Computer, Education” (2004) Dubna, Russia, January 26-31, vol. 1, pp. 156-165
(Russian).
T. (booklets)
10. S. S. Borisov, E. A. Grachev, I. V. Dokukina, T. S. Misutina. Computer practical work:
modelling of physical processes of interaction of nonrelativistic electrons with matter by
Monte Carlo methods. Tutorial for students of physics specializations. Volume 5 (2006)
Moscow, Moscow State University, 48 pages (Russian).
11. I. V. Dokukina, T. V. Matveeva, P. S. Gudtsov, A. I. Chulichkov, T. S. Misutina, E. A.
Grachev. Computer practical work: mathematical methods of analysis and interpretation
of outcomes of experiment. Tutorial for students of physics specializations. Volume 2
(2005) Moscow, Moscow State University, 40 pages (Russian).
12. I. V. Dokukina, E. A. Cheremukhin, A. I. Chulichkov, E. A. Grachev. Computer practical
work: mathematical models of nonlinear dynamics. Tutorial for students of physics
specializations. Volume 3 (2005) Moscow, Moscow State University, 24 pages (Russian).
13. I. V. Dokukina, V. V. Rgevsky, E. A. Grachev. Computer practical work. Tutorial for
students of physics specializations. Volume 1 (2003) Moscow, Moscow State University,
48 pages (Russian).
Participation in conferences (11)
1. I. D. Zharkov, I. V. Dokukina, M. E. Gracheva, E. A. Grachev. Interrelation of
intracellular metabolism with structure of intercellular connectivity, the Fourteenth
International Conference “Mathematics, Computer, Education”, Pushino, 22-27 January
2007 (Russian).
2. I. V. Dokukina, M. E. Gracheva, E. A. Grachev, J. D. Gunton. Topology of cellular
networks in calcium signaling, 9th European symposium on calcium-binding proteins in
normal and transformed cells (9th European Calcium Society meeting), Strasbourg,
France, 19-22 July 2006.
3. V. A. Dobrozhansky, I. V. Dokukina. Reconstruction of spatial pattern of living cell by
observations in the laser interference microscope, the Thirteenth International
Conference “Mathematics, Computer, Education” (2006) Dubna, Russia, January 23-28
(Russian).
4. A. S. Boiko, I. V. Dokukina, N. E. Grachev, N. E. Drozhzhina, M. E. Gracheva, E. A.
Grachev. Three-dimensional model of cell and distributed models of intracellular calcium
signaling, the Thirteenth International Conference “Mathematics, Computer, Education”
(2006) Dubna, Russia, January 23-28 (Russian).
5. I. V. Dokukina. Investigation of synchronization mechanisms during intercellular calcium
signaling, the International Conference of Graduate and Postgraduate Students
“Lomonosov-2006”, Moscow State University, Moscow, 15 April 2006 (Russian).
6. T. S. Misyutina, I. V. Dokukina. Modeling of intracellular signaling in sea urchin sperm
during chemotaxis, the International Conference of Graduate and Postgraduate Students
“Lomonosov-2006”, Moscow State University, Moscow, 15 April 2006 (Russian).
7. I. V. Dokukina, M. E. Gracheva, A. A. Tsukanov, E. A. Grachev, A. I. Chulichkov.
Structural point of view on modeling of intracellular Са2+ signaling in airway epithelial
cells, the Twelfth International Conference “Mathematics, Computer, Education”,
Pushino, 11-22 January 2005 (Russian).
8. M. M. Lebedev, A. A. Nazarov, I. V. Dokukina, L. D. Tjorlova, G. Yu. Riznichenko.
Modeling of self-sustained dissipative structure formation process in active medium by
cellular automata method. the Twelfth International Conference “Mathematics,
Computer, Education”, Pushino, 11-22 January 2005 (Russian).
9. D. A. Simakov, I. V. Dokukina. Particles movement analysis using their trajectory
puctures, the International Conference of Graduate and Postgraduate Students
“Lomonosov-2005”, Moscow State University, Moscow, 13 April 2005 (Russian).
10. I. V. Dokukina. Biophysical models in computer practical work, the International
Conference of Graduate and Postgraduate Students “Lomonosov-2004”, Moscow State
University, Moscow, 13 April 2004 (Russian).
11. B. L. Sergan, I. V. Dokukina. Cellular automata – data processing in computer practical
work, the International Conference of Graduate and Postgraduate Students
“Lomonosov-2004”, Moscow State University, Moscow, 13 April 2004 (Russian).
Invited talks at Universities, seminars and small workshops (4)
1. I. V. Dokukina. Cellular structures and calcium ions signalling pathways: mathematical
modelling. Seminar of Department of Prospective Information Technologies, Institute of
Mathematical Problems of Biology RAS, Pushchino, 25 January 2007.
2. I. V. Dokukina. New method for modeling of spatially extended systems: application to
calcium signaling. Seminar of Laboratory of Informatics and Biophysics of Complex
Systems, Department of Biophysics, Lomonosov Moscow State University, 14 December
2006.
3. I. V. Dokukina. New approaches to modeling some physical and biological processes.
Seminar of Department of Physics, Lehigh University, 9 September 2005.
4. I. V. Dokukina. Perspective directions of biophysical research. Seminar of Laboratory of
Informatics and Biophysics of Complex Systems, Department of Biophysics, Lomonosov
Moscow State University, 6 December 2004.
References
1.
Prof. Maria E. Gracheva
Physics Department
Clarkson University
Potsdam, 13699 NY, USA
Phone: 1-(315)-268-7757
gracheva@clarkson.edu
http://wwww.clarkson.edu/~gracheva
2.
Prof. Alexey I. Chulichkov
Department of Computational Physics
Faculty of Physics
Lomonosov Moscow State University
Leninskie gory, 1/2
119992 Moscow, Russia
Phone: 8-(495)-939-4178
achulichkov@gmail.com
3.
Prof. Andrey A. Polezhaev
I.E.Tamm Theoretical Physics Department
P.N.Lebedev Physical Institute
Leninsky prosp., 53
119991 Moscow, Russia
Phone: 8-(499)-132-6977
FAX: 8-(499)-135-8533
E-mail: apol@lpi.ru