Table S1; Environmental detection of ananmmox bacterial populations and activities. n.d; not determined, n.a.; not applicable, u.d; under
detection limit. ra: contribution of the anammox process to total N2 gas production.
Environments
Genus
Anammox activities
ra (%)
Methodology†
References
Marine
Sediment
<91.2 nmol
d-1
<23 ± 3 µmol NH4+
g-protein-1 min-1
Gullmar fjord
Scalindua
Gullmar fjord
Scalindua
Gullmar fjord
n.d
33.6-84 µmol L-1 d-1
Gullmar fjord
Scalindua
<0.084 µmol cm-3 d-1
Brofjorden
n.d
Skagerrak
g-1-sediment
0.3-2.4 fmol cell-1
day-1
23-47%
15N
n.d
23-40%
15N
n.d
15N
26.4 µmol L-1 d-1
18%
15N
n.d
<24.1 µmol m-2 d-1
<77%
15N
Skagerrak
n.d
13.2 µmol L-1 d-1
79%
15N
Skagerrak
n.d
<99 µmol L-1 d-1
<67%
15N
Skagerrak
n.d
<0.06 µmol cm-3 d-1
<74%
15N
Skagerrak
Scalindua
0.0206 µmol cm-3 d-1
n.d
15N
Kattegat
n.d
0.0384 µmol cm-3 d-1
15%
15N
Aarhus Bay
n.d
83 µmol L-1 d-1
<2%
15N
0.57-0.98 fmol
cell-1 day-1
0.26 fmol cell-1
day-1
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
FISH
Lipid
FISH
Lipid
FISH
PCR
(rrn)
PCR
(rrn)
FISH
Enrich
ment
Brandsma et al.,
(2011)
van de Vossenberg
et al. (2008)
Engström et al.,
(2005)
Schmid et al.,
(2007)
Engström et al.,
(2005)
Trimmer et al.,
(2013)
Engström et al.,
(2005)
Thamdrup &
Dalsgaard (2002)
Dalsgaard &
Thamdrup (2002)
Schmid et al.,
(2007)
Engström et al.,
(2005)
Thamdrup &
Dalsgaard (2002)
Environments
Methodology†
Genus
Anammox activities
ra (%)
Smeerenburg
fjorden
n.d
23-40.5 µmol cm-3 d-1
(15NH4+ cores)
5-8%
15N
Gihring et al., (2010)
Kongsfjorden
n.d
<8.5 µmol cm-3 d-1
(15NH4+ cores)
23%
15N
Gihring et al., (2010)
Kongsfjorden
Scalindua
n.d
n.d
Scalindua
0.0053 µmol cm-3 d-1
Scalindua
n.d
n.d
n.d
0.0076 µmol cm-3 d-1
10.2%
15N
n.d
5-15 µmol m-2 d-1
10-15%
15N
Disko Bay
Scalindua
0.0151 µmol cm-3 d-1
n.d
15N
Disko Bay
n.d
0.0027-0.181 µmol
cm-3 d-1
18.5-26.
7%
15N
East coasts
of Greenland
n.d
0.0018-0.0285 µmol
cm-3 d-1
1.3-34.9
%
15N
Young Sound
Scalindua
0.0122 µmol cm-3 d-1
n.d
15N
Barents Sea
Scalindua
0.0192 µmol cm-3 d-1
n.d
15N
Barents Sea
Scalindua
n.d
Greenland
Sea
Greenland
Sea
Greenland
Sea
Gulf of
Finland
0.23 fmol cell-1
day-1
0.23 fmol cell-1
day-1
0.32 fmol cell-1
day-1
0.24 fmol cell-1
day-1
n.d
n.d
15N
References
PCR
(rrn)
PCR
(rrn)
PCR
(hzs)
FISH
PCR
(rrn)
FISH
Tian et al., (2009)
Schmid et al.,
(2007)
Harhangi et al.,
(2012)
Rysgaard et al.,
(2004a)
Hietanen and
Kuparinen (2008)
Schmid et al.,
(2007)
Rysgaard et al.,
(2004a)
Rysgaard et al.,
(2004a)
PCR
(rrn)
PCR
(rrn)
PCR
(hzs)
FISH
FISH
Schmid et al.,
(2007)
Schmid et al.,
(2007)
Harhangi et al.,
(2012)
Environments
Genus
Irish Sea
Scalindua
Irish Sea
n.d
Methodology†
Anammox activities
2.1-25.7 nmol mL-1 wet
sediment
ra (%)
n.d
15N
<30.1 µmol m-2 d-1
< 61%
15N
n.d
15N
mL-1
1.3-2.8 nmol
sediment
wet
Celtic Sea
Scalindua
Celtic Sea
n.d
<18 µmol m-2 d-1
< 65%
15N
North Sea
Scalindua
n.d
n.d
15N
North Sea
n.d
2.4-68.4 µmol m-2 d-1
10-20%
15N
North Sea
n.d
<0.0528 µmol cm-3 d-1
< 32%
15N
North Sea
Scalindua
0.006-0.036 µmol cm-3
d-1
< 29%
15N
North Sea
Scalindua
n.d
n.d
Sourth Ionian
Sea
Northwest
Africa
Long Island
Sound
Scalindua
n.d
n.d
unidentifie
d
n.d
n.d
n.d
21.9-28.8 µmol L-1 d-1
4-7%
15N
Block Island
and
Rhode Island
sounds
n.d
<0.104 µmol ml-1
sediment d-1
8-42%
15N
Hanna Shoal
Scalindua
n.d
PCR
(rrn)
PCR
(rrn,
hzs)
PCR
(rrn,
hzs)
PCR
(rrn)
PCR
(rrn)
FISH
Lipid
FISH
Lipid
FISH
References
Jaeschke et al.,
(2009)
Trimmer & Nicholls
(2009)
Jaeschke et al.,
(2009)
Trimmer & Nicholls
(2009)
Schmid et al.,
(2007)
Neubacher et al.,
(2011)
Neubacher et al.,
(2013)
Lipid
Bale et al., (2014)
Lipid
Lipsewers et al.,
(2014)
Lipid
Polymenakou et al.,
(2005)
Jaeschke et al.,
(2010)
Engström et al.,
(2005)
Brin et al., (2014)
PCR
(rrn)
Penton et al., (2006)
Environments
Soledad
basin
Soledad
basin
Gulf of
California
Magdalena
margin
Lesser
Antilles
Cascadia
Basin
Genus
Anammox activities
ra (%)
n.d
n.d
n.d
Scalindua
0.17-0.675 mmol m-2
d-1
57±21%
n.d
n.d
n.d
n.d
n.d
n.d
Scalindua
n.d
0.00045-0.00521 µmol
g-1 d-1
0.00078-0.0204 µmol
mL-1d-1
13-57%
12-51%
Saanich Inlet
Scalindua
n.d
n.d
Puget Sound
Scalindua
n.d
n.d
Scalindua
n.d
n.d
Scalindua
n.d
n.d
Scalindua
n.d
n.d
Golfo Dulce
Scalindua
<0.0216 µmol cm-3 d-1
South Pacific
ocean
Scalindua
n.d
n.d
Equatorial
Pacific
Ocean
Scalindua
n.d
n.d
Washington
Margin
Juan de Fuca
Ridge
East Pacific
Rise
0.08-0.23 fmol
cell-1 day-1
n.d
Methodology†
15N
S
PCR
15N
(rrn,
hdh)
15N
S
15N
S
PCR
15N
(rrn)
References
Prokopenko et al.,
(2006)
FISH
Prokopenko et al.,
(2006)
Prokopenko et al.,
(2006)
Song et al., (2014)
Engström et al.,
(2009)
15N
15N
Prokopenko et al.,
(2013)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn,
hdh)
Walsh et al., (2009)
Penton et al., (2006)
Penton et al., (2006)
Penton et al., (2006)
Santelli et al., (2008)
FISH
Schmid et al.,
(2007)
Durbin & Teske
(2011)
Hong et al., (2011a)
Environments
Genus
Anammox activities
ra (%)
Great Barrier
Reef lagoon
n.d
<117.6 µmol m-2 d-1
< 70%
Jiaozhou Bay
Scalindua
n.d
n.d
Bohai Sea
Scalindua
n.d
n.d
Yellow Sea
Scalindua
n.d
n.d
Scalindua
n.d
n.d
Scalindua
n.d
n.d
South China
Sea
Scalindua
n.d
n.d
South China
Sea
Scalindua
n.d
n.d
South China
Sea
Scalindua
n.d
n.d
South China
Sea
Scalindua
n.d
n.d
Scalindua
n.d
n.d
Scalindua
n.d
n.d
South China
Sea
South China
Sea
South China
Sea
South China
Sea
Methodology†
15N
References
Erler et al., (2013)
PCR
(rrn,
hdh)
PCR
(rrn,
hdh)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn,
hdh,
nirS)
PCR
(rrn,
hdh)
PCR
(nirS)
PCR
(rrn,
hdh)
PCR
(rrn)
PCR
(rrn)
Dang et al., (2010)
Dang et al., (2013)
Hong & Cho (2012)
Li, T. & Wang (2013)
Shu & Jiao (2008)
Li, M. et al., (2013)
Hong et al., (2011b)
Li, M. et al., (2011a)
Li, M. et al., (2010)
Han & Gu (2013)
Han et al. (2013)
Environments
East China
Sea
East China
Sea
Methodology†
Genus
Anammox activities
ra (%)
n.d
n.d
n.d
n.d
<0.12 µmol cm-3 d-1
28%
Okhotsk Sea
Scalindua
n.d.
n.d
Sagami Bay
n.d
0.21 mmol m-2 d-1
37%
Ago Bay
Scalindua
n.d
n.d
Ago Bay
Scalindua
n.d
n.d
15N
Hiroshima
Bay
Scalindua
15 µmol NH4+
g-protein-1 min-1
n.d
15N
Osaka Bay
unidentifie
d
n.d
n.d
Ryukyu
trench
Scalindua
n.d
n.d
Ogasawara
Trench
Scalindua
n.d
n.d
15N
S
Black Sea
n.d
< 11 nmol L-1 d-1
n.d
15N
Black Sea
unidentifie
d
n.d
n.d
Black sea
Scalindua
n.d
References
Lipid
Zhao et al., (2013)
15N
Song et al., (2013)
PCR
(rrn,
hdh)
Shao et al. (2014)
15N
Glud et al., (2009)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
Enrich
ment
Enrich
ment
FISH
FISH
Enrich
ment
FISH
PCR
(rrn)
PCR
(rrn)
PCR
(hdh,
hzs)
Enrich
ment
Nakajima et al.,
(2008a)
Nakajima et al.,
(2008b)
Kindaichi et al.,
(2011)
Awata et al., (2013)
Kawagoshi et al.,
(2012)
Li, L. et al., (1999)
Nunoura et al.
(2013)
Anoxic water
column
3-4 fmol-NH4+
cell-1 d-1
nearly
100%
15N
Jensen et al., (2008)
PCR
(rrn)
FISH
Lipid
FISH
Lipid
Wakeham et al.
(2007)
Kuypers et al.,
(2003)
Schmid et al.,
(2007)
Environments
Genus
Anammox activities
ra (%)
Black sea
Scalindua
10.55 nmol L-1 d-1
n.d
Black sea
Scalindua
n.d
n.d
Black sea
Scalindua
n.d
n.d
Black sea
Scalindua
n.d
n.d
Black sea
Scalindua
n.d
n.d
Baltic sea
Scalindua
0.005-0.05 µmol L-1 d-1
Arabian Sea
n.d
Arabian Sea
<2.3 fmol-NH4+
cell-1 d-1
Methodology†
References
15N
Lam et al., (2007)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(nirS)
Kirkpatrick et al.,
(2006)
Woebken et al.,
(2008)
Fuchsman et al.,
(2012)
Kirkpatrick et al.
(2013)
n.d
15N
<0.00432 µnmol L-1 d-1
< 13%
15N
PCR
(rrn,
nirS)
Scalindua
< 0.038 µmol L-1 d-1
41-77%
15N
PCR
(nirS)
Arabian Sea
Scalindua
n.d
n.d
PCR
(rrn)
Woebken et al.,
(2008)
Arabian Sea
Scalindua
n.d
n.d
PCR
(nirS)
Bowen et al., (2015)
nearly
100%
15N
PCR
(rrn)
FISH
15N
PCR
FISH
4.5 fmol-NH4+ cell-1
d-1
Namibian
OMZ
Scalindua
n.d
Namibian
OMZ
n.d
< 0.248 µmol L-1 d-1
n.d
Namibian
Scalindua
n.d
n.d
FISH
Hannig et al., (2007)
Ward et al., (2009)
FISH
Jensen et al., (2011)
Lipid
Kuypers et al.,
(2005)
Schmid et al.,
(2007)
Kalvelage et al.,
(2011)
Woebken et al.,
Environments
OMZ
Methodology†
(rrn)
Genus
Anammox activities
ra (%)
Namibian
OMZ
Scalindua
n.d
n.d
PCR
(rrn)
Off southern
Mexico-Costa
Rica OMZ
unidentifie
d
n.d
n.d
PCR
(rrn)
Off southern
Mexico-Costa
Rica OMZ
unidentifie
d
n.d
n.d
Colombian
OMZ
Scalindua
n.d
n.d
Golfo Dulce
n.d
21-30.5 mmol m-2 d-1
19-35%
15N
Golfo Dulce
Scalindua
0.36 nmol cm-3 d-1
n.d
15N
Scalindua
16 mmol-NO2- m-2 d-1
Peruvian
OMZ
Peruvian
OMZ
Peruvian
OMZ
Peruvian
OMZ
Peruvian
OMZ
Peruvian
ODZ
Peruvian-Nort
hern Chilean
OMZ
Scalindua
<17 mmol m-2 d-1
n.d
< 0.054 µmol L-1 d-1
Scalindua
n.d
<0.1135 µmol L-1 d-1
Scalindua
n.d
n.d
<0.0216 µmol L-1 d-1
<2.4 fmol-N
d-1
15N
n.d
15N
< 35%
Lipid
15N
15N
PCR
(rrn)
PCR
(nirS)
PCR
(rrn)
PCR
(rrn)
PCR
(hdh)
PCR
(nirS)
Rush et al., (2012)
Podlaska et al.,
(2012)
PCR
(rrn)
nearly10
0%
< 100%
Woebken et al.,
(2008)
FISH
15N
cell-1
References
(2007)
Castro-González et
al. (2014)
Dalsgaard et al.,
(2003)
Schmid et al.,
(2007)
FISH
Lam et al., (2009)
FISH
Lipid
Hamersley et al.,
(2007)
Kalvelage et al.,
(2011)
Woebken et al.,
(2008)
Kalvelage et al.,
(2013)
Bowen et al., (2015)
Dalsgaard et al.,
(2012)
Environments
Northern
Chilean OMZ
Northern
Chilean OMZ
Northern
Chilean OMZ
Northern
Chilean OMZ
Hypersaline
basins
Mediterranea
n Sea
ra (%)
nearly
100%
Methodology†
Genus
Anammox activities
n.d
<0.0168 µmol L-1 d-1
Scalindua
<0.00575 µmol L-1 d-1
n.d
15N
n.d
0.6-1.47 mmol m-2 d-1
82-90%
15N
Scalindua
n.d
n.d
Scalindua
n.d
n.d
Mediterranea
n Sea
Scalindua
0.00252-0.04965 µmol
L-1 d-1
<85.5%
15N
Hydrothermal
vent
Mid-Atlantic
Ridge
Juan de Fuca
Ridge
Guaymas
basin
Kuenenia,
Scalindua
unidentifie
d
<0.03 µmol L-1 d-1
n.d
15N
< 0.0025 µmol L−1 d-1
<1%
15N
Scalindua
n.d
n.d
West coast of
Norway
Scalindua
0.0015 µmol
cm-3-sponge d-1
3.2%
Conch Reef
Kuenenia
n.d
n.d
n.d
1.5-2.5 µmol m-2 d-1
<7%
References
Thamdrup et al.,
(2006)
15N
PCR
(rrn)
FISH
Galán et al., (2009)
Brabandere et al.,
(2014)
Stevens & Ulloa
(2008)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn,
hzs)
PCR
(rrn)
PCR
(rrn)
PCR
(hzs)
van der Wielen et
al., (2005)
FISH
Lipid
Borin et al., (2013)
Lipid
Byrne et al., (2009)
Bourbonnais et al.,
(2012)
Lipid
Russ et al., (2013)
Marine sponge
15N
PCR
(rrn)
PCR
(rrn)
Hoffmann et al.,
(2009)
Mohamed et al.,
(2010)
Sea ice
Young
Sound,
15N
Rysgaard et al.,
(2008)
Environments
Franklin Bay,
Greenland
Sea, Disco
Bay, Arctic
ocean
Young
Sound,
Greenland
Sea
Marine
Aquaculture
marine
recirculating
aquaculture
system
Methodology†
Genus
Anammox activities
ra (%)
n.d
<1.15 µmol m-2 d-1
<19%
Brocadia
2.352 µM-NH3 bead-1
d-1
<10%
Scalindua
<0.132 µmol cm-3 d-1
5-26.4%
15N
n.d
undetectable
<1%
15N
n.d
3.09-10.
93%
15N
Scalindua
< 37%
15N
Colne estuary
n.d
0.7-7.85
%
15N
Colne estuary
Scalindua
<30%
15N
<7.82%
15N
<82%
15N
References
Rysgaard & Glud
(2004b)
15N
PCR
(rrn)
FISH
PCR
(rrn)
FISH
Tal et al., (2006)
Brackish water
Randers fjord
Norsminde
Fjord
Medway
estuary
Medway
estuary
Thames
estuary
Thames
estuary
n.d
n.d
<1884 µmol m-2 d-1
<0.24 µmol
ml-1-sediment d-1
<2.6 nmol ml-wet
sediment-1
FISH
Risgaard-Petersen
et al., (2004)
Risgaard-Petersen
et al., (2004)
Nicholls & Trimmer
(2009)
Rooks et al., (2012)
Nicholls & Trimmer
(2009)
PCR
(rrn)
Dong et al., (2009)
Trimmer et al.,
(2003)
Trimmer et al.,
(2005)
Environments
Thames
estuary
Swale
estuary
Roach
estuary
Crouch
estuary
Blackwater
estuary
Stour estuary
Orwell
estuary
Cavado River
estuary
Lake
Rassnitzer
Gulf of Fos
Plum Island
Sound
estuary
Great
Sippewissett
marsh
Chesapeake
Bay tidal
Choptank
River estuary
New River
Estuary
Genus
Anammox activities
ra (%)
1.45-7.4
4%
1.57-2.4
1%
0.57-1.9
%
1.37-2.9
2%
0.45-7.3
2%
1.55-8.0
3%
0.89-3.5
7%
n.d
n.d
n.d
n.d
n.d
n.d
n.d
Scalindua
<0.04 µmol cm-3 d-1
Brocadia,
Scalindua
0.504 µmol L-1 d-1
n.d
Methodology†
15N
15N
15N
15N
15N
15N
15N
PCR
(rrn)
PCR
(rrn)
References
Nicholls & Trimmer
(2009)
Nicholls & Trimmer
(2009)
Nicholls & Trimmer
(2009)
Nicholls & Trimmer
(2009)
Nicholls & Trimmer
(2009)
Nicholls & Trimmer
(2009)
Nicholls & Trimmer
(2009)
Teixeira et al.,
(2012)
Hamersley et al.,
(2009)
Minjeaud et al.,
(2009)
< 72%
15N
<50%
15N
<36.3 µmol L-1 d-1
<39%
15N
n.d
<0.0024 µmol
g-1-sediment d-1
< 3%
15N
Koop-Jakobsen &
Giblin (2009)
n.d
<0.0006 µmol
g-1-sediment d-1
<1%
15N
Koop-Jakobsen &
Giblin (2009)
Scalindua
<0.0038 µmol cm-3 d-1
< 22%
15N
n.d
<0.0011 µmol cm-3 d-1
< 10%
15N
Jettenia
0.02 – 1.4 nmol
g-sediment -1 h-1
<14.1%
15N
0.04-0.3 fmol cell-1
d-1
PCR
(rrn)
PCR
(rrn)
PCR
(hdh)
FISH
Rich et al., (2008)
Rich et al., (2008)
Lisa et al., (2014)
Environments
Baltimore
Inner Harbor
Cape Fear
River estuary
Providence
River estuary
and
Narragansett
Bay
Satilla River
and Okatee
River estuary
Logan and
Albert River
Genus
unidentifie
d
Kuenenia,
Jettenia,
Scalindua,
Brocadia
n.d
ra (%)
0.00156-0.0158 µmol
g-1-sediment d-1
3.8-16.5
%
15N
<0.024 µmol ml-1
sediment d-1
<4%
15N
Brin et al., (2014)
>2.2%
15N
Porubsky et al.,
(2009)
<9%
15N
Meyer et al., (2005)
<0.096 nmol cm-3 d-1
Yellow River
estuary
Scalindua
n.d
Pearl River
estuary
Kuenenia,
Brocadia,
Jettenia
<31.2 nmol cm-3 d-1
n.d
Tai O
n.d
n.d
n.d
Mandovi and
Chapora river
estuaries
Van Uc and
Lach Tray
River
estuaries
Methodology†
PCR
15N
(rrn)
Anammox activities
0.2 µmol g-sediment-1
d-1
<0.58 fmol cell-1 d-1
< 7%
15N
<2.42 µmol g-1 d-1
< 67%
15N
Scalindua,
Brocadia,
Kuenenia
<0.0168 µmol cm-3 h-1
<2.6%
15N
Scalindua
n.d
n.d
PCR
(rrn)
PCR
(rrn,
hdh)
PCR
(rrn,
hzs)
References
FISH
Tal et al., (2005)
Dale et al., (2009)
Dang et al., (2013)
Wang S.Y. et al.,
(2012)
Fernandes et al.,
(2012)
PCR
(rrn)
Amano et al., (2011)
PCR
(rrn)
Wang, Y.F. & Gu
(2013)
Environments
Mai Po
Nature
Reserve
Mai Po
Nature
Reserve
Methodology†
PCR
(rrn,
hdh)
Genus
Anammox activities
ra (%)
Scalindua
n.d
n.d
Scalindua,
Kuenenia
n.d
n.d
PCR
(nirS)
Li, M. et al., (2011a)
Mai Po
Nature
Reserve
Scalindua,
Kuenenia,
Brocadia,
Jettenia
n.d
n.d
PCR
(rrn,
hdh)
Li, M. et al., (2011b)
Mai Po
Nature
Reserve
Scalindua,
Kuenenia
n.d
n.d
PCR
(rrn,
hdh)
Li, M. et al., (2011c)
Mai Po
Nature
Reserve
Scalindua,
Brocadia,
Kuenenia
n.d
n.d
PCR
(rrn)
Han et al. (2013)
Mai Po
Nature
Reserve
Scalindua,
Brocadia,
Kuenenia,
Jettenia
n.d
n.d
PCR
(rrn)
Han & Gu (2013)
Mai Po
Nature
Reserve
Scalindua,
Kuenenia
n.d.
n.d
PCR
(rrn,
hdh)
Wang, Y.F. et al.
(2014)
Yodo river
estuary
Scalindua,
Kuenenia,
Brocadia
< 16.6 µmol L-1 slurry
d-1
n.d
PCR
(rrn)
Amano et al., (2007)
Freshwater
Lake, river, ditch
15N
References
Li, M. et al., (2010)
Environments
River Leith;
sediments in
hyporheic
zone
Boerenlandp
ad and
Leeuwsweidj
e ditches
Lake Lugano;
stratified
water column
Genus
Anammox activities
ra (%)
n.d
< 2%
Methodology†
Lansdown et al.,
(2012)
15N
Brocadia,
Jettenia
n.d
n.d
Lake
Lugano
cluster
< 0.0145 µmol L- 1 d-1
<30%
Lake
Zwischenahn
er Meer
Brocadia
n.d
n.d
PCR
(rrn)
Manure pond;
sediment
Jettenia
n.d
n.d
PCR
(rrn)
Scalindua
<0.24 µmol L-1 d-1
n.d
undetectable
Wintergreen
lake sediment
Scalindua
n.d
Sheriff’s
marsh
sediment
Scalindua
n.d
Honghe
freshwater
mars
Kuenenia,
Scalindua
n.d
Lake
Tanganyika;
water column
Patuxent
River
<18 fmol-NH4+
cell-1 d-1
References
15N
PCR
(hzs)
Harhangi et al.,
(2012)
PCR
(rrn)
Wenk et al., (2013)
FISH
Enrich
ment
Musat et al., (2010)
Sher et al., (2012)
15N
PCR
(rrn)
15N
PCR
(rrn)
Rich et al., (2008)
n.d
PCR
(rrn))
Penton et al., (2006)
n.d
PCR
(rrn)
Penton et al., (2006)
< 13%
PCR
(rrn,
hdh)
FISH
Schubert et al.,
(2006)
Environments
Fuhe River;
sediments in
hyporheic
zone
Baiyangdian
Lake;
sediments in
riparian
zones
Lake
Baiyangdian;
sediment
Dongjiang
River;
sediments
Dongjiang
River; water
column
Lake Kitaura;
sediments
Koisegawa
river;
sediment
Methodology†
Genus
Anammox activities
ra (%)
Brocadia,
Jettenia
n.d
n.d
Brocadia,
Kuenenia
<0.082-0.238 µmol g-1
d-1
<19-24 fmol-N
cell-1 d-1
< 35%
(locally
up to
94%)
15N
PCR
(rrn,
hzs)
Zhu et al., (2013)
Brocadia
<0.22 µmol g-1 d-1
0.73-2.25 fmol
cell-1 d-1
n.d
15N
PCR
(rrn)
Wang, Z.Y. et al.,
(2013)
Brocadia
n.d
n.d
PCR
(rrn,
hdh)
Sun et al., (2014a)
n.d
n.d
PCR
(rrn,
hdh)
Sun et al., (2014b)
<0.36 µmol cm-3 d-1
<40%
15N
PCR
(rrn)
Yoshinaga et al.,
(2011)
<0.048 µmol g-1 slurry
d-1
n.d
15N
Jettenia,
Brocadia,
Kuenenia,
Scalindua
Brocadia,
Kuenenia,
Jettenia/A
nammoxo
globus-line
age
relating
anammox
bacteria
n.d
PCR
(rrn)
References
FISH
Wang, Z. et al.,
(2012)
Zhou et al., (2014)
Environments
Methodology†
Genus
Anammox activities
ra (%)
Brocadia
n.d
n.d
PCR
(rrn)
Hirayama et al.,
(2005)
Marshes and
lakeshores;
sediments
Kuenenia,
Scalindua
n.d
n.d
PCR
(rrn)
Humbert et al.,
(2010)
natural
wetland
Kuenenia,
Scalindua,
Brocadia,
Jettenia,
Anammox
oglobus
n.d
n.d
PCR
(rrn)
Humbert et al.,
(2012)
Florida
everglades
water
conservation
area
Scalindua
n.d
n.d
PCR
(rrn)
Penton et al., (2006)
freshwater
marsh
Kuenenia,
Scalindua
n.d
n.d
PCR
(rrn,
hdh)
Lee et al., (2014)
n.d
n.d
PCR
(rrn)
Dong & Reddy
(2010)
Hishikari gold
mine
References
Wetland
Constructed
wetland
Constructed
wetland
Constructed
wetland
planctomy
cete
JMK-1
Jettenia,
Brocadia,
Anammox
oglobus
Scalindua
19.2-216 nmol g-1-soil
d-1
n.d
5.1-12.8 fmol cell-1
d-1
< 33%
15N
PCR
(rrn)
PCR
(rrn)
Enrich
ment
Zhu et al., (2011a)
Wang, Y.F. & Gu
(2013)
Environments
Anammox activities
Constructed
wetland
n.d
n.d
PCR
(hzs)
Jasper et al., (2014)
Constructed
wetland
Brocadia,
Kuenenia
Not found
PCR
(hzs)
Coban et al., (2015)
Constructed
wetland
n.d
n.d
PCR
(rrn)
Zhi et al., (2015)
PCR
(rrn)
Zhu et al., (2011b)
paddy soil
paddy soil
paddy soil
Brocadia,
Kuenenia,
Anammox
oglobus,
Jettenia
Brocadia,
Kuenenia
Anammox
oglobus,
Jettenia
<0.006-0.0348 µmol
g-1 d-1
<1.68 µmol g-VS-1 d-1
ra (%)
Methodology†
Genus
2.9-21 fmol cell-1
d-1
4-37%
15N
<5%
15N
paddy soil
Scalindua
n.d
n.d
paddy soil
n.d
n.d
n.d
Kuenenia,
Brocadia
Kuenenia,
Brocadia
Kuenenia,
Brocadia
0.0056-0.0227 µmol
g-1 d-1
0.0032-0.063 µmol g-1
d-1
0.0019-0.015
µmol g-1 d-1
paddy soil
paddy soil
paddy soil
15N
0.6-15%
2-41%
15N
15N
PCR
(rrn)
PCR
(rrn,
hzs)
PCR
(rrn,
hdh)
PCR
(hdh)
PCR
(rrn)
PCR
(hzs)
PCR
(rrn)
References
Sato et al., (2012)
FISH
Enrich
ment
Hu et al., (2013)
Wang, J. & Gu
(2013)
Wang, J. et al.,
(2014)
Shen et al., (2014)
Yang X.R. et al.,
(2015)
FISH
Nie, S. et al., (2015)
Environments
Genus
Anammox activities
ra (%)
Kuenenia,
Brocadia
n.d
n.d
Jettenia
<0.074 nmol g-1 d-1
32.177.9%
n.d
n.d
0.0021-0.023 µmol g-1
d-1
5.920.5%
n.d
Methodology†
References
Soil
agricultural
soil
agricultural
soil
agricultural
soil
agricultural
soil
glassland soil
rhizosphere
and
non-rhizosph
ere
sediments
peat soil
permafrost
soil
Siberian
permafrost
sediments
mesothermic
oil field
Brocadia,
Kuenenia,
Anammox
oglobus,
Jettenia
Brocadia,
Kuenenia,
Anammox
oglobus,
Jettenia
Kuenenia,
Brocadia
15N
PCR
(rrn)
PCR
(hdh)
Humbert et al.,
(2010)
Long et al., (2013)
PCR
(rrn,
hzs)
Shen et al., (2013)
PCR
(rrn)
Shen et al., (2015)
n.d
PCR
(rrn)
Humbert et al.,
(2010)
n.d
n.d
PCR
(rrn)
Chu et al., (2015)
Jettenia,
Brocadia
Kuenenia,
Brocadia,
Jettenia
22.56 mmol-NH4+
g-dry-1 d-1
n.d
PCR
(rrn)
n.d
n.d
PCR
(rrn)
Humbert et al.,
(2010)
Scalindua
n.d
n.d
PCR
(rrn)
Penton et al., (2006)
Kuenenia,
Brocadia
n.d
n.d
PCR
(rrn)
Shartau et al.,
(2010)
Kuenenia,
Brocadia,
Jettenia
15N
FISH
Lipid
Enrich
ment
Hu et al., (2011)
Environments
petroleum
reservoirs
Genus
Scalindua,
Brocadia,
Kuenenia,
Jettenia
Anammox activities
ra (%)
n.d
n.d
319-751 nmol L-1 d-1
< 36%
n.d
n.d
Methodology†
References
PCR
(rrn)
Li, H. et al., (2010)
PCR
(rrn)
Moore et al., (2011)
PCR
(rrn)
Smits et al., (2009)
PCR
(rrn)
Robertson et al.,
(2012)
Groundwater
ammonium-c
ontaminated
aquifer
ammonium-c
ontaminated
aquifer
septic system
plume
contaminated
municipal
aquifer
porous
aquifer
Activated sludge
(AS)
Brocadia,
Scalindua,
Kuenenia,
Jettenia
Kuenenia,
Brocadia,
Jettenia
Brocadia,
Jettenia
n.d
15N
n.d
15N
S
n.d
15N
S
Brocadia
n.d
AS
Jettenia,
Brocadia
1.2-336 µmol g-VSS
d-1
< 15%
15N
AS
n.d
<619 µmol g-VSS-1 d-1
<100%
15N
AS
Brocadia
540 µmol g-1-VSS d-1
8.7%
15N
AS
Brocadia
n.d
AS
Brocadia
1.6 kgN m-3 d-1
Clark et al, (2008)
PCR
(rrn)
Humbert et al.,
(2010)
PCR
(rrn)
Yamagishi et al.,
(2013)
Waki et al., (2010)
PCR
(rrn)
PCR
(hzs)
PCR
(rrn)
Waki et al., (2009)
Harhangi et al.,
(2012)
FISH
Enrich
ment
Lopez et al., (2008)
Environments
Genus
Anammox activities
AS
Brocadia
n.d
AS
Brocadia
11.7 kgN m-3 d-1
AS
Brocadia
n.d
AS
Brocadia,
Kuenenia
n.d
Brocadia,
Kuenenia
Brocadia,
Kuenenia
<1.08 mmol g-1-VSS
d-1
AS
Kuenenia
<2 kgN m-3 d-1
AS
Kuenenia
AS
Kuenenia
AS
Kuenenia,
Jettenia
<9.2 kgN m-3 d-1
AS
Jettenia
n.d
AS
AS
AS
AS
AS
Jettenia,
Anammox
oglobus
Kuenenia,
Brocadia
Anammox
oglobus
Scalindua
n.d
<1.4 kgN m-3 d-1
13 mmol-NH4+ g-VSS-1
d-1
26.5 µmol g-protein-1
min-1
ra (%)
Methodology†
PCR
(rrn)
PCR
(rrn)
FISH
FISH
PCR
(rrn,
hdh)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
<0.16 gN g-VSS-1 d-1
PCR
(rrn)
Araujo et al., (2011)
Tang et al., (2010)
Toh et al., (2002)
Hu et al., (2010)
Enrich
ment
Enrich
ment
Enrich
ment
FISH
<1.5 kgN m-3 d-1
5.0 µmol g-protein-1
min-1
References
Enrich
ment
Enrich
ment
Enrich
ment
FISH
FISH
Enrich
ment
Enrich
ment
Enrich
ment
Enrich
ment
Sun et al., (2011)
Tao et al., (2012)
Tao et al., (2013)
Dapena-Mora et al.,
(2004)
Egli et al., (2001)
Wang, T. et al.,
(2013)
Bae et al., (2010)
Viancelli et al.,
(2011)
FISH
Enrich
ment
Shen et al., (2012)
Enrich
ment
Schmid et al.,
(2003)
Environments
Genus
Anammox activities
ra (%)
Methodology†
References
AS
n.d
<2.09 kg m-3 d-1
AS
n.d
13.6 mmol-NH4+ L-1 d-1
FISH
AS
n.d
25 mmol g-VSS-1 d-1
FISH
AS
n.d
AS
Brocadia,
Kuenenia
AS
Brocadia
AS
n.d
0.0146 kg-N NH4
d-1
+
m-3
n.d
FISH
6.24 mmol-NH4+ g-1 h-1
2.3 µmol g-protein-1
min-1
<36 mmol-NH4+ g-VS-1
d-1
n.d
AS
n.d
AS
Brocadia
AS
Brocadia
AS
n.d
AS
n.d
AS
Brocadia
45 µmol NH4+
g-protein-1 min-1
25 µmol NH4+
g-protein-1 min-1
8.01-8.3 mmol-NH4+
g-VSS-1 d-1
<26 kgN m-3 d-1
75 µmol-NH4+
g-protein-1 min-1
<57.1 kgN m-3 d-1
<32.3 mmol-NH4+
g-VSS-1 d-1
<76.7 kgN m-3 d-1
<400 mmol g-VSS-1 d-1
15 µmol NH4+
g-protein-1 min-1
Enrich
ment
FISH
PCR
(rrn)
>0.8 kg-NO2--N m-3 d-1
AS
Enrich
ment
Enrich
ment
Enrich
ment
Enrich
ment
Enrich
ment
Enrich
ment
Enrich
ment
Enrich
ment
Enrich
ment
Enrich
ment
FISH
2-20 fmol N cell-1
day-1
PCR
(rrn)
PCR
(rrn)
PCR
(rrn)
FISH
FISH
Lipid
Tang et al., (2013)
Wang, T. et al.,
(2011)
Wang, T. et al.,
(2009)
Liao et al., (2007)
Chamchoi &
Nitisoravut (2007)
Third et al., (2005)
van de Graaf et al.,
(1996)
van der Star et al.,
(2008)
Strous et al., (1998)
Strous et al., (1999)
Puyol et al., (2013)
Enrich
ment
Tsushima et al.,
(2007)
Oshiki et al., (2011)
Enrich
ment
Chen et al., (2011)
Enrich
ment
Enrich
ment
Tang et al., (2011)
Kartal et al. (2008)
Environments
AS
†
15
Genus
Anammox
oglobus
Anammox activities
15 µmol NH4+
g-protein-1 min-1
15
ra (%)
Methodology†
PCR
(rrn)
References
FISH
Lipid
Enrich
ment
Kartal et al., (2007)
15N; N isotope pairing techniqes, NS; isotopic signature analysis, FISH; fluorescence in-situ hybridization analysis, PCR;
polymerase chain reaction, genes are indicated with parentheses.
1
References.
2
Amano, T., Yoshinaga, I., Okada, K., Yamagishi, T., Ueda, S., Obuchi, A. et al. (2007)
3
Detection of anammox activity and diversity of anammox bacteria-related 16S
4
rRNA genes in coastal marine sediment in Japan. Microbes Environ. 22: 232-242.
5
Amano, T., Yoshinaga, I., Yamagishi, T., Chu, V.T., Pham, T.T., Ueda, S. et al. (2011)
6
Contribution of anammox bacteria to benthic nitrogen cycling in a mangrove forest
7
and shrimp ponds, Haiphong, Vietnam. Microbes Environ. 26: 1-6.
8
9
10
11
Araujo, J.C., Campos, A.C., Correa, M.M., Silva, E.C., Matte, M.H., Matte, G.R. et al.
(2011) Anammox bacteria enrichment and characterization from municipal
activated sludge. Water Sci. Technol. 64: 1428-1434.
Bae, H., Park, K.S., Chung, Y.C. and Jung, J.Y. (2010) Distribution of anammox
12
bacteria in domestic WWTPs and their enrichments evaluated by real-time
13
quantitative PCR. Process Biochem. 45: 323-334.
14
Bale, N.J., Villanueva, L., Fan, H., Stal, L.J., Hopmans, E.C., Schouten, S. and
15
Sinninghe Damsté, J.S. (2014) Occurrence and activity of anammox bacteria in
16
surface sediments of the southern North Sea. FEMS Microbiol. Ecol. 89: 99-110.
17
Borin, S., Mapelli, F., Rolli, E., Song, B., Tobias, C., Schmid, M.C. et al. (2013)
18
Anammox bacterial populations in deep marine hypersaline gradient systems.
19
Extremophiles 17: 289-299.
20
Bourbonnais, A., Juniper, S.K., Butterfield, D.A., Devol, A.H., Kuypers, M.M.M.,
21
Lavik, G. et al. (2012) Activity and abundance of denitrifying bacteria in the
22
subsurface biosphere of diffuse hydrothermal vents of the Juan de Fuca Ridge.
23
Biogeosciences 9: 4661-4678.
24
Bowen, J.L., Weisman, D., Yasuda, M., Jayakumar, A., Morrison, H.G. and Ward, B.B.
25
(2015) Marine oxygen-deficient zones harbor depauperate denitrifying
26
communities compared to novel genetic diversity in coastal sediments. Microb.
27
Ecol. 70: 311-321.
28
Brabandere, L.D., Canfield, D.E., Dalsgaard, T., Friederich, G.E., Revsbech, N.P., Ulloa,
29
O. et al. (2014) Vertical partitioning of nitrogen-loss processes across the
30
oxic-anoxic interface of an oceanic oxygen minimum zone. Environ. Microbiol.
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16: 3041-3054
32
Brandsma, J., van de Vossenberg, J., Risgaard-Petersen, N., Schmid, M.C., Engstrom, P.,
33
Eurenius, K. et al. (2011) A multi-proxy study of anaerobic ammonium oxidation
34
in marine sediments of the Gullmar Fjord, Sweden. Environ. Microbiol. Rep. 3:
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360-366.
36
Brin, L.D., Giblin, A.E. and Rich, J.J. (2014) Environmental controls of anammox and
37
denitrification in southern New England estuarine and shelf sediments. Limnol.
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Oceanogr. 59: 851-860.
39
Byrne, N., Strous, M., Crepeau, V., Kartal, B., Birrien, J.L., Schmid, M. et al. (2009)
40
Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea
41
hydrothermal vents. ISME J. 3: 117-123.
42
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44
Chamchoi, N. and Nitisoravut, S. (2007) Anammox enrichment from different
conventional sludges. Chemosphere 66: 2225-2232.
Chen, C.J., Huang, X.X., Lei, C.X., Zhu, W.J., Chen, Y.X. and Wu, W.X. (2012)
45
Improving Anammox start-up with bamboo charcoal. Chemosphere 89:
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1224-1229.
47
Chu, J., Zhang, J., Zhou, X., Liu, B. and Li, Y. (2015) A comparison of anammox
48
bacterial abundance and community structures in three different emerged
49
plants-related sediments. Curr. Microbiol. doi 10.1007/s00284-015-0851-5.
50
Clark, I., Timlin, R., Bourbonnais, A., Jones, K., Lafleur, D. and Wickens, K. (2008)
51
Origin and fate of industrial ammonium in anoxic ground water 15N evidence for
52
anaerobic oxidation (anammox). Ground Water Monit. R. 28: 73-82.
53
Castro-González, M., Molina, V., Rodríguez-Rubio, E. and Ulloa, O. (2014) The first
54
report of a microdiverse anammox bacteria community in waters of Colombian
55
Pacific, a transition area between prominent oxygen minimum zones of the eastern
56
tropical pacific. Environ. Microbiol. Rep. 6: 595-604.
57
Coban, O., Kuschk, P., Kappelmeyer, U., Spott, O., Martienssen, M., Jetten, M.S.M. et
58
al. (2015) Nitrogen transforming community in a horizontal subsurface-flow
59
constructed wetland. Water Res. 74: 203-212.
60
Dale, O.R., Tobias, C.R. and Song, B.K. (2009) Biogeographical distribution of diverse
61
anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary.
62
Environ. Microbiol. 11: 1194-1207.
63
Dalsgaard, T., Canfield, D.E., Petersen, J., Thamdrup, B. and Acuña-González, J. (2003)
64
N2 production by the anammox reaction in the anoxic water column of Golfo
65
Dulce, Costa Rica. Nature 422: 606-608.
66
Dalsgaard, T., Thamdrup, B., Farias, L. and Revsbech, N.P. (2012) Anammox and
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