MARLIN J. ATKINSON
PUBLICATIONS (Peer-Reviewed)
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Atkinson, M.J.; S.V. Smith; E.D. Stroup 1981 Circulation in Enewetak Atoll Lagoon.
Limnology and Oceanography 26(6):1074-1083.
Atkinson, M.J. 1982 Phosphate flux as a measure of net community productivity of coral
reef flats. Proceedings of the 4th International Coral Reef Symposium.Manila, Philippines.
May 1981 Vol. 1:417-418.
Atkinson, M.J.; S.V. Smith; E.D. Stroup 1982 Circulation in Enewetak Atoll lagoon.
Proceedings of the 4th International Coral Reef Symposium. Manila, Philippines. May 1981
Vol 1:335-338.
Atkinson, M.J.; S.V. Smith 1983 C:N:P ratios of benthic marine plants. Limnology and
Oceanography 28(3):568-574.
Smith, S.V.; M.J. Atkinson 1983 Mass balance of carbon and phosphorus in Shark Bay,
Western Australia. Limnology and Oceanography 28(4):625-639.
Crossland, C.J.; B.G. Hatcher; M.J. Atkinson; S.V. Smith 1984 Dissolved nutrients of a
high latitude coral reef, Houtman Abrolhos Islands, Western Australia. Marine Ecology
Progress Series 14:159-163.
Smith, S.V.; M.J. Atkinson 1984 Phosphorus limitation of net production in a confined
aquatic ecosystem. Nature 307(5952):626-627.
Atkinson, M.J.; R. Grigg 1984 Model of a coral reef ecosystem: Part II Gross and net
primary production at French Frigate Shoals, Hawaii. Coral Reefs 3:13-22.
Grigg, R.; J.J. Polovina; M.J. Atkinson 1984 Model of a coral reef ecosystem: Part III
Community regulation, fisheries yield, and resource management. Coral Reefs 3:23-29.
Vink, S; M.J. Atkinson 1984 High dissolved C:P excretion ratios for large benthic marine
invertebrates. MarineEcology Progress Series 21: 191-195.
Kimmerer, W.J.; A.D. McKinnon; M.J. Atkinson; J. Kessell 1985 Plankton spatial
distributions in Shark Bay, Western Australia. Australian Journal Marine and Freshwater
Research 36:421-32.
Holloway, P.E.; S. Humphries; M.J. Atkinson; J. Imberger 1985 Mechanisms of nitrogen
supply to the North West shelf, Australia. Australian Journal Marine and Freshwater
Research 36:753-64.
Atkinson, M.J. 1987 Low phosphorus sediments in a hypersaline marine bay. Estuarine,
Coastal, and Shelf Science 24:335-348.
Atkinson, M.J. 1987 Rates of phosphate uptake by coral reef communities. Limnology and
Oceanography 32(2):426-435.
Atkinson, M.J.; D.F. Smith 1987 Slow uptake of 32P over a barrier reef flat. Limnology and
Oceanography 32(2):436-441.
Atkinson, M.J.; T. Berman; B. Allanson; J. Imberger 1987 Fine-scale oxygen variability in a
stratified estuary: patchiness in aquatic ecosystems. Marine Ecology Progress Series
36(1):1-10.
Atkinson, M.J. 1987 Alkaline phosphatase activity of coral reef benthos. Coral Reefs
6(2):59-62.
Atkinson, M.J. 1987 Oceanography of Enewetak Atoll.In: The Natural History Enewetak
Atoll.Edited by D.M. Devaney; E.R. Reese; B.L. Burch; P. Helfrich; U.S. Department of
Energy, DOE/EV/00703-T1. 1:57-71.
Price, A.R.G.; T.W. Chiffings; M.J. Atkinson; T.J. Wrathall 1987 Appraisal of resources in
the Saudi Arabian Gulf.In: Proceeding of the 5th Symposium on Coastal and Ocean
Management, May 1987.Seattle, Washington USA. 1:1031-1045.
20. Atkinson, M.J. 1988 Fast-response oxygen sensor for a free-fall CTD. Limnology and
Oceanography 33(1):141-145.
21. Burke, C.M.; M.J. Atkinson 1988 Measurement of total alkalinity in hypersaline water:
values of fH. Marine Chemistry 25:49-55.
22. Price, A.R.G.; M.J. Atkinson; H. Felemban; J. McEachern; T.J. Wrathall; L. Zwarts; J.A.
Dobbin; H.E. Robertson; B. Humbert-Droz; D.L. Elder 1988 Saudi Arabia: an assessment
of biotopes and management requirements for the Saudi Arabian Gulf coastal zone.
International Union of the Conservation of Nature, Gland Switzerland. 310 pp.
23. Newton, P.A.; M.J. Atkinson 1991 Kinetics of dark oxygen uptake of Pocillopora
damicornis. Pacific Science 45(3):270-275.
24. Atkinson, M.J. 1988 Are coral reef communities nutrient-limited? Proceedings of the 6th
International Coral Reef Symposium, Australia. August 1988 Invited Review 1:157-166.
25. Atkinson, M.J. 1990 Dynamics of phosphate in Shark Bay, Western Australia. In: Research
in Shark Bay: Report of the France-Australe Bicentenary Expedition Committee. Edited by
P.F. Berry; S.D. Bradshaw; B.R. Wilson. Western Australian Museum p.49-60.
26. Bilger, R.W.; M.J. Atkinson 1992 Anomalous mass transfer of phosphate on coral reef flats.
Limnology and Oceanography 37:261-272.
27. Atkinson, M.J.; R.W. Bilger 1992 Effects of water velocity on P-uptake in coral reef flat
communities. Limnology and Oceanography 37:273-279.
28. Atkinson, M.J. 1992 Productivity of Enewetak Atoll reef flats predicted from mass transfer
relationships. Continental Shelf Research 12(7/8):799-807.
29. Atkinson, S.; M.J. Atkinson 1992 Detection of estradiol-17b during a mass coral spawn.
Coral Reefs 11:33-35.
30. Dollar, S.J.; M.J. Atkinson 1992 Effects of nutrient subsidies from groundwater to
nearshore marine ecosystems off the island of Hawaii. Estuarine, Coastal and Shelf Science
35:409-424.
31. Atkinson, M.J.; E. Kotler; P. Newton 1994 Effects of water velocity on ammonium uptake
of a Porites compressa community. Pacific Science 48(3):296-303.
32. Tribble, G.W.; M.J. Atkinson; F.J. Sansone; S.V. Smith 1994 Reef metabolism and endoupwelling in perspective. Coral Reefs 13:199-201.
33. Smith, S.V.; M.J. Atkinson 1994 Mass balance of nutrient fluxes in coastal lagoons. In:
Coastal Lagoon Processes. Edited by B. Kjerfve; Elsevier, Amsterdam. pp 133-155.
34. Bilger, R.W.; M.J. Atkinson 1995 Effects of nutrient loading on mass transfer rates to a
coral reef communities. Limnology and Oceanography 40(2):279-289.
35. Atkinson, M.J.; F.I.M. Thomas; N. Larson; E. Terrill; K. Morita; C.C. Liu 1995 A microhole potentiostatic oxygen sensor for oceanic CTDs. Deep Sea Research 42(5):761-771.
36. Thomas, F.I.M.; M.J. Atkinson 1995 Field calibrations of a micro-hole potentiostatic
oxygen sensor for oceanic CTDs. Journal of Atmospheric and Oceanic Technology
12(2):390-394.
37. Thomas, F.I.M.; C.A. McCarthy; J. Bower; S. Krathapalli; M.J. Atkinson; P. Flament 1995
Response characteristics of two oxygen sensors for oceanic CTDs. Journal of Atmospheric
and Oceanic Technology 12(3):687-690.
38. Atkinson, M.J.; B. Carlson; J. Crow 1995 Coral growth in high-nutrient low-pH seawater: A
case study of the Waikiki Aquarium. Coral Reefs 14:1-9.
39. Hearn, C.J. and M.J. Atkinson 1995 The application of model SPECIES to Kaneohe Bay,
Oahu, Hawaii. In: Estuarine and Coastal Modeling. Edited by M.L. Spawlding; RT. Cheng;
American Society of Civil Engineers, New York 355-366.
40. Atkinson, M.J.; F. Thomas; N. Larson 1996 Effects of pressure on oxygen sensors. Journal
of Atmospheric and Oceanic Technology. 13(6):1267-1274.
41. Thomas, F.I.M.; M.J. Atkinson 1997 Ammonia uptake of coral reefs: effects of surface
roughness and water velocity on mass transfer. Limnology and Oceanography 42(1):81-88.
42. Baird, M.; M.J. Atkinson 1997 Measurement and prediction of mass transfer to coral reefs.
Limnology and Oceanography. 42(8):1685-1693.
43. Larned, S.; M.J. Atkinson 1997 Effects of water velocity on ammonium and phosphate
uptake and nutrient-limited growth in the macroalga, Dictyosphaeria cavernosa. Marine
Ecology Progress Series 157:295-302.
44. Atkinson, M.J.; C. Bingman 1997 Elemental composition of commercial seasalts. Journal of
Aquariculture and Aquatic Sciences 8:39-43.
45. Crow, G.L.; M.J. Atkinson; B. Ron; S. Atkinson; A.D.K. Skillman; G.T.F. Wong 1998
Relationships of water chemistry to serum thyroid hormones in captive sharks with goitres.
Aquatic Geochemistry. 4:469-480.
46. Atkinson, M.J.; H. Barnett; H. Anderson; C. Langdon; S.J. Carpenter; T. McConnaughey;
E. Hochberg; M. Smith; B. Marino 1998 The Biosphere 2 Coral Reef Biome. Ecological
Engineering 13:147-171.
47. Tarrant, A.M.; S. Atkinson; M.J. Atkinson 1999 Estrone and estradiol-17b concentration in
tissue of the scleractinian coral, Montipora verrucose. Comparative Biochemistry and
Physiology A122:85-92.
48. Langdon, C.;T. Takahashi; F. Marubini; M.J. Atkinson;C. Sweeney; H. Aceves; H. Barnett;
D. Chipman; J. Goggard; 1999 Effect of calcium carbonate saturation state on calcification
rate of an experimental coral reef. Global Biogeochemical Cycles 14: 639-654.
49. Atkinson, M.J. 1999 Topographical relief as a proxy for friction factors of reefs: estimates
of nutrient uptake into coral reefs benthos. Proceeding of the Hawaii Coral Reef Monitoring
Workshop, Honolulu, June 9-11.
50. Marubini, F.; M.J. Atkinson 1999 Effects of lowered pH and elevated nitrate on coral
calcification. Marine Ecology Progress Series 188:117-121.
51. Hochberg, E.J.; M.J. Atkinson 2000 Spectral discrimination of coral reef benthic
communities. Coral Reefs. 19(2): 164-171.
52. Marubini, F; H. Barnett; C. Langdon; M.J. Atkinson 2000 Dependence of calcification on
light and carbonate ion concentration for the hermatypic coral Porites compressa. Marine
Ecolology Progress Series 220: 153-162.
53. Atkinson, M.J. 2000 Kanoehe Bay. In: Coral Reefs, mangroves and seagrasses: a
sourcebook for managers. Edited by F.Talbot and C. Wilkinson. Science Communications
AIMS
54. Hearn, C.; M.J. Atkinson 2000 Effects of sea-level rise on the hydrodynamics of a coral
reef lagoon: Kaneohe Bay, Hawaii. In: Sea-Level Changes and Their Effects. J Noye (ed.).
World Scientific Publishing Co Pte Ltd, Singapore, pp. 25-48.
55. Tarrant, A.; M.J. Atkinson; S. Atkinson 2001 Uptake of estrone from the water column by a
coral community. Marine Biology 139:321-325.
56. Hearn, C.J.; M.J. Atkinson 2001 Some influences of local sea-level rise on the
hydrodynamics of a coral reef lagoon: Kaneohe Bay, Hawaii. Coral Reefs (In Press).
57. Falter, J.L.; M.J. Atkinson; C.Langdon 2001 Production-Respiration relationships at
different time-scales within the Biosphere 2 coral reef biome. Limnology and
Oceanography 46(7):1653-1660.
58. Atkinson, M.J.; J.L. Falter; C.J. Hearn 2001 Nutrient dynamics in the Biosphere 2 coral reef
mesocosm: water velocity controls NH4 and PO4 uptake. Coral Reefs 20(4):341-346.
59. Hearn C.J.; M.J. Atkinson; J.L. Falter 2001 A physical derivation of nutrient-uptake rates in
coral reefs: effects of roughness and waves. Coral Reefs 20(4):347-356.
60. Hearn, C.J.; M.J. Atkinson; J.L. Falter 2002 Response to a comment on “A physical
derivation of nutrient-uptake rates in coral reefs: effects of roughness and waves.” Coral
Reefs 21:319-321.
61. Andréfouët S.; C. Payri; E. J. Hochberg; L.Mao Che; M. J. Atkinson 2003 Airborne
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hyperspectral detection of microbial mat pigmentation in Rangiroa atoll (French Polynesia).
Limnology and. Oceanography 48: 426-430.
Hochberg, E.; M.J. Atkinson; S. Andrefouet 2003 Spectral reflectance of coral reef bottom
types worldwide and implications for coral reef remote sensing. Remote Sensing of
Environment 85:159-173.
Hochberg, E.; M.J. Atkinson 2003 Capabilities of remote sensors to classify coral, algae
and sand as pure and mixed spectra. Remote Sensing of Environment. 85: 174-189.
Tarrant, A.M.; C.H. Blomquist; P. Lima; M.J. Atkinson; S. Atkinson 2003 Metabolism of
androgens and estrogens by reef building corals. Comparative Biochemistry and
Physiology, Part B. Biochemistry Vol 136/3 pp 473-485.
Atkinson, M.J.; J. Falter 2003 Biogeochemistry of coral reefs. In. Biogeochemistry of
Marine Ecosystems, Eds. K. Black and G. Shimmield; Blackwell Publishing, CRC Press
pp.40-64.
Atkinson, S.; M.J. Atkinson; A.M. Tarrant 2003 Estrogens from sewage in coastal marine
environments. Environmental Health Perspectives 111(4):531-535.
Ribes, M.; R.Coma; M.J. Atkinson; R.A. Kinzie III 2003 Particle removal by coral reef
communities: picoplankton is a major source of nitrogen. Marine Ecology Progress Series
257:13-23.
Andrefouet, S.; E.J. Hochberg; C. Payri; M.J. Atkinson; F.E. Muller-Karger; H. Ripley
2003 Multi-scale remote sensing of microbial mats in atoll environments. International
Journal of Remote Sensing 24: 2661-2682.
Steven, A.D. L.; M.J. Atkinson 2003 Nutrient-uptake by coral-reef microatolls. Coral Reefs
22:197-204.
Hochberg, E.; M.J. Atkinson; A. Apprill; S. Andréfouët 2004 Spectral reflectance of coral.
Coral Reefs 23: 84-95.
Andréfouët, S.; C. Payri; E.J. Hochberg; C. Hu; M.J. Atkinson; F.E. Muller-Karger 2004
Use of in situ and airborne reflectances for scaling–up spectral discrimination of coral reef
macroalgae from species to communities. Marine Ecology Progress Series. 283:161-177.
Tarrant, A.M.; M.J. Atkinson; S. Atkinson 2004 Effects of steroidal estrogens on coral
growth and reproduction. Marine Ecology Progress Series 269:121-129.
Falter, J. L.; M.J. Atkinson; M.A. Merrifield. 2004. Mass-transfer limitation of nutrient
uptake by a wave-dominated reef flat community. Limnology and Oceanography 49:
1820-1831.
Lowe R.J.; J.L. Falter; M.D. Bandet; G. Pawlak; M.J. Atkinson; S.G. Monismith; J.R.
Koseff 2005 Spectral wave dissipation over a barrier reef. J. Geophyical Research –oceans
110,CO4001 doi 10.1029/2004JC002711.
Ribes, M.; R. Coma; M.J. Atkinson; R.A. Kinzie III 2005 The importance of sponges and
ascidians in removal of picoplankton from coral reef water. Limnology Oceanography
50(5): 1480-1489.
Falter, J.L.; M.J. Atkinson; C. F-M. Coimbra 2005 Effects of surface roughness and
oscillatory flow on dissolution of plaster forms: Evidence for nutrient mass transfer to coral
reef communities. Limnology and Oceanography 50:246-254.
Langdon, C; M.J. Atkinson 2005 Effect of elevated pCO2 on photosynthesis and
calcification of corals and interactions with seasonal change in temperature/irradiance and
nutrient enrichment. J. Geophysical Research 110: C09S07. doi:10.1029/2004JC002576.
Blomquist, C.H.; P.H. Lima; A.M. Tarrant; M.J. Atkinson; S. Atkinson 2005 17BHydroxysteroid dehydrogenase (17beta-HSDD) in scleractinian corals. Comparative
Biochemistry and Physiology B. Biochem Mol Biol 143(4):397-403.
Tribollet, A.; C. Langdon; S. Golubic; M.J. Atkinson 2006 Endolithic microflora are major
primary producers in dead carbonate substrates of Hawaiian coral reefs. J. Phycology
42:292-303.
80. Falter J.L.; M.J. Atkinson; J.H. Fleming; M.M. Bos; R.J. Lowe; J.R. Koseff; S.G.
Monismith 2006 A new mesocosm for simulating the effects of wave-driven water motion
on the biogeochemistry of benthic reef communities. Limnology and Oceanography
Methods 4:68-79.
81. Conger C.; E.J. Hochberg, C.H. Fletcher ; M.J. Atkinson 2006 De-correlating Remote
Sensing Color Bands from Bathymetry in Optically Shallow Waters. IEEE Transactions on
Geoscience and Remote Sensing. 44(6):1655-1660.
82. Hochberg E.J.; A. Apprill; M.J. Atkinson; R.R. Bidigare 2006 Bio-optical modeling of
photosynthetic pigments in corals. Coral Reefs 25(1):99-109.
83. Loehr, L.C.; C.J. Beegle-Krause; K. George; C.D. McGee; A.J. Mearns; M.J. Atkinson
2006 The significance of dilution in evaluating possible impacts of waste water discharges
from large cruise ships. Marine Pollution Bulletin 52(6):681-688.
84. Tribollet, A.; M.J. Atkinson; C. Langdon 2006 Effects of elevated pCO2 on epilithic and
endolithic metabolism of reef carbonates. Global Change Biology 12:2200-2208.
85. Falter, J.L.; M.J. Atkinson; R.J. Lowe ; S.G. Monismith ; J.R. Koseff 2007 Effects of nonlocal turbulence on the mass transfer of dissolved species to model coral reefs. Limnology
and Oceanography 52: 274-285.
86. Lowe, R. J.; J. L. Falter; J. R. Koseff; S. G. Monismith; M.J. Atkinson 2007 Spectral wave
flow attenuation within submerged canopies: Implications for wave energy dissipation, J.
Geophys. Res. 112, C05018, DOI10.1029/2006JC003605.
87. Ribes, M.; M.J. Atkinson 2007 Effects of water velocity on picoplankton uptake by coral
reef communities. Coral Reefs DOI 10.1007/s00338-007-0211-4.
88. Hochberg, E.J.; M.J. Atkinson 2008 Coral reef benthic productivity based on optical
absorptance and light-use efficiency. Coral Reefs: 27:49-59.
89. Falter, J.L.; R.J. Lowe; M.J. Atkinson; S.G. Monismith; & D.W. Schar 2008
Continuous measurements of net production over a shallow reef community using a
modified Eulerian approach. Journal of Geophysical Research – Oceans 113, C07035,
DOI: 10.1029/2007JC004663.
90. Lowe, R.J.; J.L. Falter; M.J. Atkinson; & S.G. Monismith 2008 Wave-driven circulation
of a coastal reef-lagoon system. Journal of Physical Oceanography DOI:
10.1175/2008JPO3958.1.
91. Tarrant, A.M.; J. Cortes; M.J. Atkinson; S. Atkinson; K. Johanning; T. Chiang; J.A. Vargas;
J.A McLachlan 2008 Three orphan nuclear receptors in the scleratinian coral Pocillopora
damicornis. Revista de Biologia Tropical (In Press).
92. Lowe, R.J.; J.L. Falter; S.G. Monismith; M.J. Atkinson 2008 A numerical study of
circulation in a coastal reef-lagoon system. Journal of Geophysical Research (In Press)
93. Atkinson, M.J. & P. Cuet 2009 Possible effects of ocean-acidification on coral reef
biogeochemistry: topics for research. Marine Ecology Progress Series (In Press)
94. Cuet, P.; Atkinson, M.J.; Blanchot, J.; Cordier, E.; Falter, J.L.; Frouin, P.; Fujimura, H.; &
Y. Suzuki. Carbon, nitrogen, and phosphorus budgets of a coral-dominated fringing reef in
Reunion Island: constraints of groundwater nitrogen on coral reef metabolism. (In Prep)
95. Falter, J.L.; M.J. Atkinson; E.J. Hochberg; R.J. Lowe; & S.G. Monismith 2009 Limits to
gross primary production in coral reef communities. (In Prep)
96. Falter, J.L. & M.J. Atkinson 2009 Seasonal, spatial and taxonomic differences in the
C:N:P of reef-flat macrophytes. (In Prep)
97. Cuet, P.; M.J. Atkinson; A. Tribollet; D.W. Schar & J.L. Falter 2009 Effects of nutrients on
the functional relationship between coral calcification and aragonite saturation state. (In
Prep)
98. Tribollet, A.; C. Godinot; M.J. Atkinson; C. Langdon 2009 Effects of elevated pCO2 on
dissolution of coral carbonates by microbial euendoliths. Global Biogeochemical Cycles
(Submitted)