MEC_3971_sm_AppendixS2

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Appendix 2. References of studies used for the analyses.
Aldrich PR, Hamrick JL, Chavarriaga P & Kochert G. (1998) Microsatellite analysis of
demographic genetic structure in fragmented populations of the tropical tree Symphonia
globulifera. Molecular Ecology 7:933-944
Arafeh RMH, Sapir Y, Shmida A, Iraki N, Fragman O & Comes HP (2002) Patterns of genetic
and phenotypic variation in Iris haynei and I. atrofusca (Iris sect. Oncocyclus = the royal
irises) along an ecogeographical gradient in Israel and the West Bank. Molecular Ecology
11:39-53.
Armstrong TTJ & De Lange PJ (2005) Conservation genetics of Hebe speciosa
(Plantaginaceae) an endangered New Zealand shrub. Botanical Journal of the Linnean
Society 149:229-239.
Bacles CFE, Lowe AJ & Ennos A. Genetic effects of chronic habitat fragmentation on tree
species: the case of Sorbus aucuparia in a deforested Scottish landscape. Molecular
Ecology 13:573-584.
Bacles CFE, Burczyc J, Lowe A, & Ennos RA (2005) Historical and contemporary mating
patterns in remnant populations of the forest tree Fraxinus excelsior l. Evolution 59:979990.
Baucom RS, Estill JC & Cruzan MB (2005) The effect of deforestation on the genetic
diversity and structure in Acer saccharum (Marsh): Evidence for the loss and
restructuring of genetic variation in a natural system. Conservation Genetics 6:39-50
Billington HL (1991) Effect of population size on genetic variation in a dioecious conifer.
Conservation Biology 5:115-119
Bonnin I, Colas B, Bacles C, Holl AC, Hendoux F, Destiné B & Virad F (2002) Population
structure of an endangered species living in contrasted habitats: Parnassia palustris
(Saxifragaceae) Molecular Ecology 11:979-990
Butcher PA, Skinner AK & Gardiner CA (2005) Increased inbreeding and inter-species gene
flow in remnant populations of the rare Eucalyptus benthamii. Conservation Genetics
6:213-226.
Buza L, Young A & Thrall P (2000) Genetic erosion, inbreeding and reduced fitness in
fragmented populations of the endangered tetraploid pea Swainsona recta. Biological
Conservation 93:177-186.
Cardoso SRS, Provan J, Da Fonseca Lira C, Ramos Pereira L, Ferreira PC & Cardoso MA.
(2005) High levels of genetic structuring as a result of population fragmentation in the
tropical tree species Caesalpinia echinata Lam. Biodiversity & Conservation 14:10471057.
Cascante A, Quesada M, Lobo JJ & Fuchs EA (2002) Effects of dry tropical forest
fragmentation on the reproductive success and genetic structure of the tree Samanea
saman. Conservation Biology 16:137-147.
Chang CS, Kim H, Park TY & Maunder M. (2004) Low levels of genetic variation among
southern peripheral populations of the threatened herb, Leontice microrhyncha
(Berberidaceae) in Korea. Biological Conservation 119:387-396.
Coates DJ & Hamley VL (1999) Genetic divergence and the mating system in the
endangered and geographically restricted species, Lambertia orbifolia Gardner
(Proteaceae). Heredity 83:418-427.
Colas B, Olivieri I & Riba M (1997) Centaurea corymbosa, a cliff-dwelling species tottering on
the brink of extinction: A demographic and genetic study. Proceedings of the National
Academy of Sciencies USA 94:3471-3476.
Collevati RG, Grattapaglia D & Hay JD (2001) Population genetic structure of the
endangered tropical tree species Caryocar brasiliense, based on variability at
microsatellite loci. Molecular Ecology 10:349-356.
Cotrim HC, Chase MW & Pais MS (2003) Silene rothmaleri P. Silva (Caryophyllaceae), a
rare, fragmented but genetically diverse species. Biodiversity & Conservation 12:10831098.
Cozzolino S, Noce ME, Musacchio A & Widmer A (2003) Variation at a chloroplast
minisatellite locus reveals the signature of habitat fragmentation and genetic bottlenecks
in the rare orchid Anacamptis palustris (Orchidaceae). American Journal of Botany
90:1681-1687.
Cruzan MB (2001) Population size and fragmentation thresholds for the maintenance of
genetic diversity in the herbaceous endemic Scutellaria montana (Lamiaceae). Evolution
55:1569-1580.
Cuartas-Hernandez & Nuñez-Farfan (2006) The genetic structure of the tropical understory
herb Dieffenbachia seguine L. before and after forest fragmentation. Evolutionary
Ecology Research 8:1061-1075.
Culley TM & Grubb TC (2003) Genetic effects of habitat fragmentation in Viola pubescens
(Violaceae), a perennial herb with chasmogamous and cleistogamous flowers. Molecular
Ecology 12:2919-2930.
Dayanandan S, Dole J, Bawa K & Kesseli R (1999) Population structure delineated with
microsatellite markers in fragmented populations of a tropical tree, Carapa guianensis
(Meliaceae). Molecular Ecology 8:1585-1592.
Dick CW, Etchelecu G & Austerlitz F (2003) Pollen dispersal of tropical trees (Dinizia
excelsa: Fabaceae) by native insects and African honeybees in pristine and fragmented
Amazonian rainforest. Molecular Ecology 12:753-764.
Ditbrenner A, Hensen I & Wesche K (2005) Genetic structure and random amplified
polymorphic DNA diversity of the rapidly declining Angelica palustris (Apiaceae) in
Eastern Germany in relation to population size and seed production. Plant Species
Biology 20:191-200.
Dolan RW (1994) Patterns of isozyme variation in relation to population size, isolation, and
phytogeographic history in royal catchfly (Silene regia; Caryophyllaceae). American
Journal of Botany 81:965-972.
Doligez A & Joly HI (1997) Mating system of Carapa procera (Meliaceae) in the French
Guiana tropical forest. American Journal of Botany 84:461-470.
England PR, Usher AV, Whelan RJ & Ayre DJ (2002) Microsatellite diversity and genetic
structure of fragmented populations of the rare, fire-dependent shrub Grevillea
macleayana. Molecular Ecology 11:967-977.
Fernandez JF & Sork VL (2005) Mating Patterns of a Subdivided Population of the Andean
Oak (Quercus humboldtii Bonpl., Fagaceae). Journal of Heredity 96:635-643.
Fischer M & Matthies D (1998) RAPD variation in relation to population size and plant fitness
in the rare Gentianella germanica (Gentianaceae). American Journal of Botany 85:811819.
Fischer M, Husi R, Prati D, Peintinger M, Van Kleulen M & Schmid B (2000) RAPD variation
among and within small and large populations of the rare clonal plant Ranunculus
reptans (Ranunculaceae). American Journal of Botany 87:1128-1137.
Fusch EJ, Lobo JA & Quesada M (2003) Effects of forest fragmentation and flowering
phenology on the reproductive success and mating patterns of the tropical dry forest tree
Pachira quinata. Conservation Biology 17:149-157.
Galeuchet DJ, Perret C & Fischer M (2005) Microsatellite variation and structure of 28
populations of the common wetland plant, Lychnis flos-cuculi L., in a fragmented
landscape. Molecular Ecology 14:991-1000.
Godt MJW & Hamrick JL (1998) Allozyme diversity in the endangered pitcher plant
Sarracenia rubra ssp. alabamensis (Sarraceniaceae) and its close relative S. rubra ssp.
rubra. American Journal of Botany 85:802-810.
Godt MJW, Johnson BR & Hamrick JL (1996) Genetic diversity and population size in four
rare Southern Appalachian plant species. Conservation Biology 10:796-805.
Gonzales E & Hamrick JL (2005) Distribution of genetic diversity among disjunct populations
of the rare forest understory herb, Trillium reliquum. Heredity 95:306-314.
Gustafson DJ, Gibson DJ & Nickrent DL (2004) Conservation genetics of two co-dominant
grass species in an endangered grassland ecosystem. Journal of Applied Ecology
41:389-397.
Gustafsson S (2000) Patterns of genetic variation in Gymnadenia conopsea, the fragrant
orchid. Molecular Ecology 9:1863-1872.
Hall P, Orrell LC & KS Bawa (1994) Genetic diversity and mating system in a tropical tree,
Carapa guianensis (Meliaceae). American Journal of Botany 81:1104-1111.
Hall P, Chase MR & Bawa KS (1994) Low genetic variation but high population differentiation
in a common tropical forest tree species. Conservation Biology 8:471-482.
Hall P, Walker S & Bawa KS (1996) Effect of forest fragmentation on genetic diversity and
mating system in a tropical tree, Pithecellobium elegans. Conservation Biology 10:757768
Hensen I & Oberprieler C (2005) Effects of population size on genetic diversity and seed
production in the rare Dictamnus albus (Rutaceae) in central Germany. Conservation
Genetics 6:63-73.
Herrerías-Diego Y. (2006) PhD Thesis. Effects of tropical dry forest fragmentation on the
reproductive success, seed predation and genetic structure of Ceiba aesculifolia HBK
(Bombacaceae). UNAM, Doctorado en Ciencias Biológicas.
Heuertz M, Vekemans X, Hausman JF, Palada M & Hardy OJ (2003) Estimating seed vs.
pollen dispersal from spatial genetic structure in the common ash. Molecular Ecology
12:2483-2495.
Hilfiker K, Gugerli F, Schütz JP, Rotach P & Holderegger R (2004) Low RAPD variation and
female-biased sex ratio indicate genetic drift in small populations of the dioecious conifer
Taxus baccata in Switzerland. Conservation Genetics 5:357-365.
Honnay O, Coart E, Butaye J, Adriaens D, Van Glabeke S & Roldán-Ruiz I (2006) Low
impact of present and historical landscape configuration on the genetics of fragmented
Anthyllis vulneraria populations. Biological Conservation 127:411-419.
Honnay O, Jacquemyn H, Roldán-Ruiz I & Hermy M (2006) Consequences of prolonged
clonal growth on local and regional genetic structure and fruiting success of the forest
perennial Maianthemum bifolium. Oikos 112:21-30.
Honnay O, Adriaens D., Coart E., Jacquemyn H, & Roldán-Ruiz I (2007) Genetic diversity
within and between remnant populations of the endangered calcareous grassland plant
Globularia bisnagarica L. Conservation Genetics 8:293-303.
Hooftman DA, Billeter RC, Schmid B & Diemer M (2004) Genetic effects of habitat
fragmentation on common species of Swiss fen meadows. Conservation Biology
18:1043-1051.
Jacquemyn H, Honnay O, Galbusera P, Roldán-Ruiz I (2004) Genetic structure of the forest
herb Primula elatior in a changing landscape. Molecular Ecology 13:211-219.
Jacquemyn H, Brys R, Honnay O, Hermy M, Roldán-Ruiz I (2006) Sexual reproduction,
clonal diversity and genetic differentiation in patchily distributed populations of the
temperate forest herb Paris quadrifolia (Trilliaceae). Oecologia 147:434-444.
Julio NB, Sobral A, Rondan Dueñas J, Di Rienzo J, Renison D, Hensen I (2008) RAPD and
ISSR markers indicate diminished gene flow due to recent fragmentation of Polylepis
australis woodlands in central Argentina. Biochemical, Systematics and Ecology 36: 329335.
Jump AS & Pañuelas J (2006) Genetic effects of chronic habitat fragmentation in a windpollinated tree. Proceedings of the National Acadedmy of Sciences USA 103:8096-8100.
Kettle CJ, Hollingsworth M, Jaffre T, Moran B & Ennos RA (2007) Identifying the early
genetic consequences of habitat degradation in a highly threatened tropical conifer,
Araucaria nemorosa Laubenfels. Molecular Ecology 16:3581-3591.
Kreivi M, Rautiainen P, Aspi J & Hyvärinen M (2005) Genetic structure and gene flow in an
endangered perennial grass, Arctophila fulva var. pendulina. Conservation Genetics
6:683-696.
Lammi A, Siikamäki P & Mustajärvi K (1999) Genetic diversity, population size, and fitness in
central and peripheral populations of a rare plant Lychnis viscaria. Conservation Biology
13:1069-1078.
Lee SL (2000) Mating system parameters of Dryobalanops aromatica Gaertn. f.
(Dipterocarpaceae) in three different forest types and a seed orchard. Heredity 85:338345.
Lienert J, Fischer M, Schneller J & Diemer M (2002) Isozyme variability of the wetland
specialist Swertia perennis (Gentianaceae) in relation to habitat size, isolation, and plant
fitness. American Journal of Botany 89:801-811.
Llorens TM, Ayre DJ & Whelan RJ (2004) Evidence for ancient genetic subdivision among
recently fragmented populations of the endangered shrub Grevillea caleyi (Proteaceae).
Heredity 92:519-526.
Lönn M & Prentice HC (2002) Gene diversity and demographic turnover in central and
peripheral populations of the perennial herb Gypsophila fastigiata. Oikos 99:489-498.
López-Pujol J, Orellana MR, Bosch M, Simon J & Blanché C (2003) Effects of habitat
fragmentation on allozyme diversity and conservation status of the coastal sand dune
plant Stachys maritima (Lamiaceae) in the Iberian peninsula. Plant Biology 5: 504-512.
López-Pujol J, Zhang FM & Ge S (2005) Population genetics and conservation of the
critically endangered Clematis acerifolia (Ranunculaceae). Canadian Journal of Botany
83:1248-1256.
López-Pujol J, Font J, Simon J, César Blanché (2007) Can the preservation of historical
relicts permit the conservation of endangered plant species? The case of Silene sennenii
(Caryophyllaceae). Conservation Genetics 8:903-912.
Luijten SH, Dierick A, Oostermeijer JGB, Raijmann LE & den Nijs HCM (2000). Population
size, genetic variation, and reproductive success in a rapidly declining, self-incompatible
perennial (Arnica montana) in the Netherlands. Conservation Biology 14: 1776-1787.
Maki M, Masuda M & Inoue K (1996) Genetic diversity and hierarchical population structure
of a rare autotetraploid plant, Aster kantoensis (Asteraceae). American Journal of Botany
83:296-303.
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inbreeding in fragmented temperate forests of a self-Incompatible tree, Embothrium
coccineum. Conservation Biology 21:232-240.
Matolweni LO, Balkwill K, McLellan T (2000) Genetic diversity and gene flow in the
morphologically variable, rare endemics Begonia dregei and Begonia homonyma
(Begoniaceae). American Journal of Botany 87:431-439.
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Neel MC & Ellstrand NC (2003) Conservation of genetic diversity in the endangered plant
Eriogonum ovalifolium var. vineum (Polygonaceae). Conservation Genetics 4:337-352.
Novick RR, Dick CW, Lemes MR, Navarro C, Caccone A & Bermingham E (2003) Genetic
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O’connell LM, Mosseler A & Rajora OP (2006) Impacts of forest fragmentation on the mating
system and genetic diversity of white spruce (Picea glauca) at the landscape level.
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dioecious shrub Juniperus communis in fragmented Dutch heathlands. Plant Species
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variation, and plant performance in the narrow endemic Cochlearia bavarica.
Conservation Genetics 3:131-144.
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SBJ (1994) Genetic variation and outcrossing rate in relation to population size in
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distribution and population size in Lathyrus vernus (L.) Bernh. (Fabaceae). Plant
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