List of posters Bioinformatics

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List of posters
Bioinformatics
P01: MsCompare: A Software Suite for LC and GC/MS Metabolomics
M.M.A. Ruijken
P02: Bioinformatic tools for the analysis of protein complexes enriched by sizeexclusion chromatography in label-free and SILAC labeled cells
Linsey M. Raaijmakers, Renske Penning, Nadine Binai, Maarten Altelaar, Albert J.R. Heck
P03: Automated Differential Pattern Discovery Across Multiple Tissue Samples
Measured by Imaging Mass Spectrometry
Nico Verbeeck, Yousef El Aalamat, Bart De Moor, Richard M. Caprioli, Raf Van de Plas, and
Etienne Waelkens
Current applications for large molecules
P04: A TransOmics study of the saliva of children with autism spectrum disorder
using high definition mass spectrometry
Alisa G. Woods; Joanne B. Connolly ; Lee Gethings; Armand G. Ngounou Wetie; Cristian
Cojocariu; Janet Hammond; Jeanne P. Ryan; Costel C. Darie
P05 : On Terminal Alkynes That Can React with Active-Site Cysteine Nucleophiles in
Proteases
Reggy Ekkebus, Sander I. van Kasteren,Yogesh Kulathu, Arjen Scholten, Ilana Berlin, Paul
P. Geurink, Annemieke de Jong, Soenita Goerdayal, Jacques Neefjes, Albert J. R. Heck,
David Komander, and Huib Ovaa
P06: LC-MS analysis of intact enzymes using the Synapt G2 mass spectrometer
Ioana Barbu, Nicolas Abello, Jort Gerritsma, Maurien Olsthoorn, Marcel van Tilborg
P07: Controlled Reduction of Disulfide Bonds in Biopharmaceuticals Using an
Electrochemical Reactor Cell online with LC/MS
Agnieszka Kraj, Hendrik-Jan Brouwer, Nico Reinhoud, Jean-Pierre Chervet
P08: Comprehensive Study of O-Linked Glycans of Erythropoeitin by nano-LC-MALDI
TOF/TOF MS
Patrick van Houtsa, Anja Resemannb, Nannan Taoc, Ulrike Schweiger-Hufnagelb, Kristina
Marxb and Stephanie Kaspar
P09 : Glycan and glycopeptide profiling of biopharmaceuticals
D. Falck, K. Reiding, A. L. Hipgrave Ederveen, G.S.M. Kammeijer, M. Wuhrer
P10: Evaluation of a new combination integrating an ion funnel and an active pixel
detector for the efficient transmission and detection of native proteins generated by
electrospray ionization
Tiffany Porta, Shane R. Ellis, Dirk-Jan Spaanderman, Marc C. Duursma, Ron M.A. Heeren
P11: A High Resolution Bench-Top Orbitrap LC-MS Workflow Solution for
Comprehensive Intact Monoclonal Antibody Characterization
Zhiqi Hao, David Horn, Shiaw-Lin Wu, Xiaoyue Jiang, Andreas FR Huhmer and Patrick K
Bennett
P12: Large Scale Targeted Protein Quantification using HR/AM Selected Ion
Monitoring with MS/MS Confirmation on the Orbitrap Fusion Tribrid MS
R. Kiyonami, M. Senko, V. Zabrouskov, J. Egertson, S. Ting , M. MacCoss, A. FR Hühmer
P13: Localizing and characterizing disulfide bonds in MS-based proteomics using
online LC–Electrochemistry–MS
L. Switzar, S. Nicolardi, H. Dalebout, A. Aartsma-Rus, M. Palmblad, Y. van der Burgt
P14: The behaviour of detergent micelles in the gas phase, analyzed by Ion mobility
mass spectrometry
Jeroen van Dyck, Albert Konijnenberg, Frank Sobott
P15: Validation study of a targeted LC-MS method for the detection of milk and egg
allergens in cake flour
Merel A. Nessen, Klaas Wubs, Dick Hooijerink, Stephen Lock, Monique G.E.G. Bremer,
Saskia Sterk
Current applications for small molecules
P16: Improved detection of thiouridine analogs
Jef Rozenski
P17: Quan / Qual Methodology for P450 Drug and Metabolite Profiling
Don Richards, Helen Lomax, Mark Savage, Angus Nedderman
P18: Analysis of black tea by high-resolution UPLC-MS
Boudewijn Hollebrands, Christian H. Grün
P19: Hydrogen peroxide reactions on cocaine in hair using imaging mass
spectrometry
Eva Cuypers, Bryn Flinders, Ingrid Bosman, Klaas Lusthof, Arian Van Asten, Jan Tytgat,
Ron M.A. Heeren
P20: Combined mass spectrometry and multivariate data analysis image
accumulation of fatty acids in the hindbrain of mouse models with impaired
peroxisomal β-oxidation
Karolina Škrášková, Gert Eijkel, Myriam Baes, Paul P. Van Veldhoven, Stephanie de
Munter, Ron M.A. Heeren
P21: High Performance Anion Exchange Chromatography (HPAEC)-Mass
Spectrometry (MS): analysis of complex mixtures of oligosaccharides in biomass
hydrolysates
Leon Coulier, Wibo van Scheppingen, Rob van der Hoeven, Jort Gerritsma
P22: Breath acetone to monitor life style interventions in field conditions: An
exploratory study
D.Samudrala,J.Mandon,P.A.Brown,G.Lammers,M.T.E. Hopman, L.Blanchet, F. J. M.
Harren,S.M.Cristescu
P23: NPLC-APPI-MS for the separation and identification of sterols, steradienes, and
sterol oxides
Yvonne Westphal, Sophie Besseau, Christian Grün
P24: Detecting meat and fish spoilage compounds using Proton Transfer Reaction
Mass Spectrometry
P. Brown, D. Samudrala, F. J. M. Harren, S. M. Cristescu
P25: Nutrition Researcher Cohort and metabolomics analysis in dry blood spot
samples
I.Bobeldijk, E. Verheij, A. Boorsma, Th. Gundersen, L. Brennan, B. van Ommen, H. Daniel,
L. O. Dragsted, J. Bouwman, M. Caspers, S. Wopereis, L. Schomburg, E. Bakaeva and K.
E. Geillinger
P26: Ultrasensitive Quantification Assay for Oxytocin in Human Plasma using the
Waters ionKey™ LC/MS Microfluidic Platform
Eric S.E. van Beelen, Catalin E. Doneanu, Paul Rainville
P27:Quadrupole-Orbitrap Steroid Analysis in Bovine Urine
Frans Schoutsen, Marco Blokland, Paul Zomer
P28: Preparation of longitudinal sections of hair samples for analysis by multi-modal
mass spectrometry imaging
Bryn Flinders, Eva Cuypers, Hans Zeijlemaker, Ron M. A. Heeren
P29: Evaluation of different column chemistries for fast urinary metabolic profiling
D. Kloos, H. Lingeman, O.A. Mayboroda, W.M.A. Niessen, A.M. Deelder, M. Giera
P30: Accurate mass isotopomer determination of TMS-MOX derivatized central carbon
metabolites in industrial microorganisms using GC-MS/MS
A. ten Pierick, P.T.N. van Dam, S.A. Wahl, R. Maleki Seifar
P31:The first step towards a Quan/Qual workflow: chromatographic peak capacity
optimization
Anne-Charlotte Dubbelman, Filip Cuyckens, Lieve Dillen, Gerhard Gross, Thomas
Hankemeier, Rob J. Vreeken
P32: Probing the innate immune response through viral metabolomics: An in vitro
feasibility study
J.C. Schoeman, K. Strassburg, F. Zaaraoui, A. Andeweg, A.B. Osterhaus, T. Hankemeier,
R.J. Vreeken
Identification
P33: Pre-fractionation of protein complexes using Size Exclusion Chromatography
R.Penning, LM Raaijmakers, NA Binai, AJR Heck, AFM Altelaar
P34: A Proteomics approach to study the changes in the interactome of Protein
Phosphatase 1 in Arterial Fibrillation
David Y. Chiang, Nicolas Lebesgue, David L. Beavers, J. Mirjam A. Damen, Niels Voigt,
Dobromir Dobrev, Albert J.R. Heck, Xander H.T. Wehrens, Arjen Scholten
P35: Ultrafast Statistical Profiling: FTMS based profiling of Myxobacteria natural
products for rapid detection and identification of marker compounds
Rob van der Heijdena, Aiko Barschb; Matthias Wittb, Daniel Krugc,d,Thomas Hoffmannc,d and
Rolf Müllerc,d
P36: Robust phosphoproteome enrichment using titanium (IV) affinity
chromatography
Houijang Zhou, Harm Post, Hanfa Zou, Shabaz Mohammed, and Albert J.R. Heck
P37: Molecular characterisation of food emulsifiers using combined liquid
chromatography – mass spectrometry
Wilma du Chatinier and Hans-Gerd Janssen
P38: Metabolomics of Opiate-induced changes in Murine Brain by GC/Q-TOF.
Martin Haex; Sofia Aronova, Manhong Wu, Peyman Sahbaie, Ming Zheng, David Clark,
Stephan Baumann and Gary Peltz
P39: Characterisation of exosomes in colon cancer cells Lim 1215 highlights the
existence of exosomes subpopulations.
Antoine Hubert, Bart Jacobs, Rita Derua, Jens Wouters, Ben Van den Bosch, Sabine Tejpar
and Etienne Waelkens.
P40: Enhancing General Unknown Screening with Data Independent Analysis on a
Quadrupole Orbitrap Mass Spectrometry System
Olaf Scheibner, Matthias Ruff, Bernadette Vogler, Heinz Singer, Maciej Bromirski
P41: Stabilization of sialylated N-glycans by methyl esterification and lactonization for
analysis by MALDI-TOF-MS
D.M. Kuijper, K.R. Reiding and M. Wuhrer
Non-mainstream
P42: Lipidomic Profiling of Rat Adipose Tissue after Treatment with PPAR-pan
Agonist Using Sub-2µm Particle CO2 Based Supercritical Chromatography Mass
Spectrometry
Giorgis Isaac, Michael D. Jones, James Langridge, John P. Shockcor, and Julian L. Griffin
P43: Spectroscopic identification of cyclic diketopiperazine b2-ions from
deprotonated peptides containing proline and histidine
Josipa Grzetic, Jonathan Martens, Giel Berden, Jos Oomens
P44: Mass Spectrometry Imaging of Breast Tumor Hypoxia Using the Chemical Marker
Pimonidazole
Nadine E. Mascini, Asif Rizwan, Lu Jiang, Menglin Cheng, Kristine Glunde, Ron M.A.
Heeren
P45: Development of an isotopic traceability tool for the geographical origin of bell
peppers
Eva de Rijke, Chiara. Cerli, Daniël Bakker, Michel Ebskamp, Karsten Kalbitz, Chris de
Koster
P46: Native mass spectrometry: what can it bring to you?
Anja Boumeester, Arjan Barendregt, Sara Rosati, Albert J.R. Heck
P47: Molecular Diversity and Body Distribution of Saponins in the Sea Star Asterias
rubens by Mass Spectrometry
Demeyer Marie, Caulier Guillaume, De Winter Julien, Wisztorski Maxence, Fournier Isabelle,
Eeckhaut Igor, Flammang Patrick and Gerbaux Pascal
P48: Electrochemistry/MS – a Powerful Tool in Drug Metabolism
Agnieszka Kraj, Hendrik-Jan Brouwer, Nico Reinhoud, Jean-Pierre Chervet
P50: MALDI-TOF mass spectrometry imaging of drug related crystal-like structures in
frozen and paraffin embedded formalin-fixed rabbit kidney tissue sections
Anne L. Bruinen, Gert Eijkel, Marjolein Van Heerden, Filip Cuyckens, Ron M.A. Heeren
P51: Qualitative and Semi-Quantitative Analysis of Intact Chicken Ovalbumin by HighResolution Native Mass Spectrometry Reveals 59 Proteoforms
Arjan Barendregt, Yang Yang and Albert J.R. Heck.
P52: A Multi-Analytical Approach for the Architectural Purity Assessment of
Macrocyclic Polyesters Obtained by Diels-Alder Photo-Click Coupling
Thomas Josse, Ozcan Altintas, Julien De Winter, Kim K. Oehlenschlaeger, Philippe Dubois,
Olivier Coulembier, Christopher Barner-Kowollik and Pascal Gerbaux
P53: Comprehensive characterization of the mouse brain proteome sampled in mass
spectrometry imaging studies.
Bram Heijs, Ricardo Carreira, Reinald Shyti, Arn van den Maagdenberg, Peter van Veelen,
Liam McDonnell
P54:Control over Molar mass, Dispersity, End-groups and Kinetics in
Cyclopolymerization of ortho-Phthalaldehyde : Adapted Choice of Phosphazene
Organocatalyst.
Julien De Winter, Andrew P. Dove, Armin Knoll, Pascal Gerbaux, Philippe Dubois and
Olivier Coulembier
P55: Chemical reactions of cross-linked peptides in solution and in the gas phase for
topology studies of macromolecular assemblies in complex mixtures
Luitzen de Jong, Hansuk Buncherd, Winfried Roseboom, Leo J. de Koning and Chris G. de
Koster
P56: One-pot microscale sample preparation for Capillary Electrophoresis and Mass
Spectrometry
Anthonius A. M. Heemskerk, Guinevere S.M. Kammeijer, Bart Schoenmaker, Rico J.E.
Derks, André M. Deelder, Oleg A. Mayboroda
P57: Surface analysis for compositional, chemical and structural imaging;
hydrocarbon search in sedimental rocks
Guzel Kireeva, Marc C. Duursma, Bryn Flinders, Peter Arisz, Herman P.C.E. Kuipers, Pim
Mul, Erik Tegelaar, Ron M.A. Heeren
P58: Quadrupole Mass Filter design and performance for operation in stability zone 1
1Mariya J. Antony Joseph, 2Sarfaraz U. Syed, 1Simon Maher, 1Fred P. M. Jjunju, 2Ron
Heeren, and 1Stephen Taylor*
P59: A new approach in hair forensics: Rapid analysis of THC in hair using DARTā€MS
W.F. Duvivier, T.A. van Beek, E.J.M. Pennings, M.W.F. Nielen
P60: Mass spectrometry imaging of crude oil interfaces with water/brine and
surfactants
Mark Jansena, Marc Duursmaa, Donald F. Smitha,b, Pim Mulc, Herman Kuijpersc, Erik
Tegelaard, Frans Korndorfferd, Jos Pureveend, Ron M.A. Heerena
P61: Fundamental spray characteristics and complex formation using SAWN and ESI
Bob Hommersom, Shane R. Ellis, Tiffany Porta, Ron M.A. Heeren
P62: History of mass spectrometry as mapped by bibliometric methods
Cathelijn Waaijer and Magnus Palmblad
P63: Molecular mapping of skin and biofilms by MALDI MS imaging
Boudewijn Hollebrandsa, Hans-Gerd Janssena,b, Christian H. Grüna
Quantitation
P64: Disclosure of efflux pumps in the proteome of the Mycobacterium
tuberculosis Beijing genotype
Jeroen de Keijzer, Petra de Haas, Arnoud H. de Ru, Peter A. van Veelen, Dick van
Soolingen
P65: Maturation reinforcement of Bacillus subtilis spores by cross-linking of spore
outer coat proteins
Wishwas Abhyankar , Rachna Pandey, Alexander Ter Beek b, Stanley Brul , Leo J. de
Koning , Chris G. de Koster
P66: Identification of post-transcriptional control upon Carbon Catabolite Repression
in Escherichia coli
O. Borirak, M.D. Rolfe, M. Bekker, H. Dekker, W. Roseboom, J. Green, K.J. Hellingwerf,
H.C.J. Hoefsloot, L.J. de Koning, and C.G. de Koster
P67: Applying Micro Flow LC and High Speed Data Acquisition MS/MS to the Analysis
of Pesticides Residues in Complex Spice Matrix
V. Goudriaana, D. Bakerb, N. Loftusb, S. Hirdc
P68: Rapid Simultaneous Assay of 25 Mycotoxins in a Variety of Food Samples
V. Goudriaana, S. Moreaub, M. Levi, E. Capodannoc
P69: Direct Monitoring of Cerebellar Phosphorylation Dynamics in a Kinase Knockout
Mouse
Eleonora Corradini, Raghavan Vallur, Linsey M. Raaijmakers, Susanne Feil, Robert Feil,
Albert J.R. Heck, Arjen Scholten
P70: Throwing DARTs at the surface
Rickdeb Sen, Han Zuilhof
P71: Maximizing Triple Quadrupole Mass Spectrometry Productivity Through the
Automated Use of an Expanded Dual-Channel HPLC System with Online Sample
Cleanup
Martin Haex, Kevin McCann, Sameer Nene, Doug McIntyre, Edmond Neo, Dennis Nagtalon;
Agilent Technologies, Santa Clara, CA
P72: A New Workflow for the Visualization and Identification of Lipids by LC Ion
Mobility Mass Spectrometry (IMMS) Using IMS-QTOF with Fragmentation
Martin Haex; Crystal K. Cody; Theodore Sana; Ruwan Kurulugama; William Barry; Alex
Mordehai; George Stafford; Agilent Technologies
P73: Quantitation and characterisation of cardiolipin molecular species by enhanced
resolution (ER) mass spectrometry combined with MRM-induced tandem mass
spectrometry on a hybrid triple quadrupole/ion trap (4000 QTRAP) mass spectrometer
Derua, R,*., Daniels, V,*., Dehairs, J., Swinnen, J. and Waelkens, E
P74: LC-MS/MS analysis of aromatic amines
Lieve Dillen, Willy Cools, Michel Carpentier, Bart Stoops and Gerhard Gross
P75: Advances in Sensitivity, Robustness, Speed and Dynamic Range on a Newly
Developed Triple-Stage Quadrupole Mass Spectrometer
Harald Osera, Ethan Chana, Oleg Silivraa, Joshua Mazea, Satendra Prasada, Jean-Jacques
Dunyacha, Mike Belforda, Eloy Woutersa, Huy Nguyena, Terry Olneya
P76: A comprehensive solution for quantitation of ketamine and ketamine metabolites
in urine using LC-MS/MS and GC-MS/MS
Helen Sun, Louis Maljers
P77: N-Lactoyl amino acids - A novel class of mammalian metabolites formed by
reverse proteolysis of lactate and amino acids
R.S. Jansen, R.D. Addie, R. Merkx, A. Fish, O. Bleijerveld, P. Borst and K. van de Wetering
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