Fig. S1. Bacteria DGGE profile – Rectum cavity. (Taxa abbreviations as in Fig. 7)
1 – 10 represent the sampling times: (1) July 10, week 1, (2) July 12, week 1, (3) July 15,
week 2, (4) July 17, week 2, (5) July 19, week 2, (6) July 24, week 3, (7) July 31, week 4, (8)
August 7, week 5, (9) August 14, week 6, (10) August 21, week 7
Fig. S2. Bacteria DGGE profile – Mouth cavity. (Taxa abbreviations as in Fig. 9)
1 – 10 represent the sampling times: (1) July 10, week 1, (2) July 12, week 1, (3) July 15,
week 2, (4) July 17, week 2, (5) July 19, week 2, (6) July 24, week 3, (7) July 31, week 4, (8)
August 7, week 5, (9) August 14, week 6, (10) August 21, week 7
Table S1
Rectum cavity
Mouth cavity
Closest match of bacterial taxa from swine mouth and rectum tissues, and C. albiceps third instar larvae
tissue
Sample
Bacterial Taxa
Closest match
Affiliation
PMC37 [KP751679]
PMC20 [KP751680]
PMC9 [KP751682]
PMC13 [KP751685]
PMC14 [KP751686]
PMC15 [KP751687]
PMC16 [KP751688]
PMC6 [KP751692]
PMC30 [KP751695]
PMC5 [KP751694]
PMC21 [KP751681]
PMC11 [KP751683]
PMC12 [KP751684]
PMC17 [KP751689]
PMC7 [KP751690]
PMC8 [KP751691]
PMC4 [KP751693]
PMC31 [KP751696]
PMC32 [KP751697]
PMC34 [KP751698]
PMC36 [KP751699]
PMC38 [KP751700]
PCC19 [KP751643]
PCC4 [KP751644]
PCC6 [KP751645]
PCC14 [KP751647]
PCC24 [KP751649]
PCC30 [KP751650]
PCC9 [KP751653]
Ignatzschineria ureiclastica NR_116121.1
Ignatzschineria indica NR_116120.1
Wohlfahrtiimonas chitiniclastica NR_042554.1
Ignatzschineria larvae NR_025382.1
Pseudomonas fragi NR_113578.1
Methylomonas methanica NR_074627.1
Proteus mirabilis NR_074898.1
Pseudomonas poae NR_102514.1
Pseudomonas chlororaphis NR_122097.1
Desulfospira joergensenii NR_029320.1
Clostridium putrefaciens NR_113324.1
Clostridium algidicarnis NR_119083.1
Bacillus fastidiosus NR_113989.1
Streptococcus porcorum NR_108477.1
Clostridium autoethanogenum NR_121758.1
Clostridium paraputrificum NR_026135.1
Hespellia porcina NR_025206.1
Clostridium cadaveris NR_104695.1
Eubacterium oxidoreducens NR_104737.1
Clostridium acidisoli NR_028898.1
Clostridium estertheticum NR_118995.1
Clostridium saccharobutylicum NR_122061.1
Bacillus subtilis NR_118383.1
Halanaerobium fermentans NR_024715.1
Cellulosilyticum lentocellum NR_074536.1
Peptostreptococcus anaerobius NR_118652.1
Lactobacillus delbrueckii NR_114168.1
Clostridium kluyveri NR_074165.1
Clostridium saccharobutylicum NR_122061.1
-Proteobacteria
δ-Proteobacteria
Firmicutes
Firmicutes
Query
cover (%)
99
100
100
100
94
100
99
94
94
97
97
100
100
99
99
99
97
100
96
90
96
98
100
100
100
100
92
98
96
Ident
(%)
100
99
99
100
98
99
100
99
100
96
100
99
98
100
100
100
100
99
100
100
91
100
100
100
100
99
100
100
100
Larvae tissue
PCC20 [KP751655]
PCC37 [KP751656]
PCC36 [KP751657]
PCC1 [KP751658]
PCC46 [KP751659]
PCC45 [KP751660]
PCC25 [KP751661]
PCC41 [KP751662]
PCC44 [KP751663]
PCC7 [KP751646]
PCC2 [KP751648]
PCC13 [KP751652]
PCC40 [KP751664]
PCC32 [KP751665]
PCC31 [KP751666]
PCC5 [KP751667]
PCC18 [KP751668]
PCC29 [KP751651]
PCC38 [KP751654]
L45 [KP751676]
L42 [KP751673]
L43 [KP751674]
L38 [KP751669]
L40 [KP751671]
L41 [KP751672]
L20 [KP972112]
L44 [KP751675]
L39 [KP751670]
L36 [KP751677]
L37 [KP751678]
Sarcina maxima NR_026147.1
Tissierella praeacuta NR_044860.1
Enterococcus moraviensis NR_113937.1
Mycoplasma parvum NR_121759.1
Clostridium purinilyticum NR_117121.1
Sporosarcina globispora NR_118912.1
Paenibacillus mucilaginosus NR_028675.1
Vagococcus acidifermentans NR_116574.1
Enterococcus faecalis NR_113901.1
Actinobacillus scotiae NR_027207.1
Campylobacter lanienae NR_118521.1
Pseudomonas panacis NR_043195.1
Wohlfahrtiimonas chitiniclastica NR_042554.1
Ignatzschineria indica NR_116120.1
Ignatzschineria ureiclastica NR_116121.1
Halomonas variabilis NR_114071.1
Ignatzschineria larvae NR_025382.1
Barnesiella intestinihominis NR_113073.1
Mucilaginibacter calamicampi NR_118563.1
Wolbachia endosymbiont NR_074571.1
Ralstonia pickettii NR_102967.1
Burkholderia plantarii NR_037064.2
Ignatzschineria ureiclastica NR_116121.1
Ignatzschineria indica NR_116120.1
Ignatzschineria larvae NR_025382.1
Wohlfahrtiimonas chitiniclastica NR_042554.1
Rhodanobacter fulvus NR_114231.1
Sebaldella termitidis NR_044686.2
Clostridium limosum NR_104825.1
Romboutsia lituseburensis NR_118728.1
-Proteobacteria
Bacteroidetes
α-Proteobacteria
β-Proteobacteria
-Proteobacteria
Fusobacteria
Firmicutes
100
92
97
100
99
93
93
100
95
93
100
99
100
100
100
90
100
98
91
97
92
94
100
100
100
100
95
99
93
95
100
100
96
99
99
100
100
99
100
100
100
96
100
99
99
99
99
99
100
100
100
100
100
99
100
100
100
99
100
100