Supplementary Materials
Supplementary Table 1. Expression levels of gene transcripts differentially expressed in the
moderately resistant progenies at 60 hpi.
Supplementary Figure 1. Total, quality trimmed and mapped reads (in million bp) in each
genotype. Figures after ‘-’ indicate hours post-inoculation when the samples were collected.
Mapped reads may be positioned at multiple locations in the genome.
Supplementary Figure 2. Functional representation of the differentially expressed genes (DEGs)
at 60 hpi. The transcripts were categorized into: a) biological process, b) cellular component
and c) molecular function.
Supplementary Figure 3. Gene Ontology (GO) analysis of switchgrass biological processes
transcripts differentially expressed in the resistant progeny at 60 hpi using agriGO. Each box
shows the GO term number, the p-value in parenthesis and the GO term. The first pair of
numerals represents the number of genes in the input list associated with that GO term and the
number of genes in the input list. The second pair of numerals represents the number of genes
associated with the particular GO term in the custom annotated switchgrass database and the
total number of switchgrass genes with GO annotations in the database. The box colors indicate
levels of statistical significance with yellow = 0.05, orange = e-05 and red = e-09.
Supplementary Figure 4. Gene Ontology (GO) analysis of switchgrass cellular component
transcripts differentially expressed in the resistant progeny at 60 hpi using agriGO. Each box
shows the GO term number, the p-value in parenthesis and the GO term. The first pair of
numerals represents the number of genes in the input list associated with that GO term and the
number of genes in the input list. The second pair of numerals represents the number of genes
associated with the particular GO term in the custom annotated switchgrass database and the
total number of switchgrass genes with GO annotations in the database. The box colors indicate
levels of statistical significance with yellow = 0.05, orange = e-05 and red = e-09.