V International Conference on Computational

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V International Conference on Computational Bioengineering

Date: Wednesday, 11 September, 2013

8:00am Registration

8:50am Opening ceremony

9:00am Plenary lecture

Multiscale modeling of skeletal strength: achievements and open challenges

Viceconti, Marco

9:45am MUSCULOSKELETAL MODELING

Hybrid neuromusculoskeletal modeling of the human lower extremity

Sartori, Massimo; Lloyd, David G.; Farina, Dario

IMAGING / TRANSPORT

Multiscale modelling of the human hepatic perfusion

Debbaut, Charlotte; Monbaliu, Diethard; Cornillie, Pieter;

Casteleyn, Christophe; Dierick, Manuel; Segers, Patrick

Subject-specific versus scaled-generic musculoskeletal modeling: a case study using the

NMSBuilder software

Valente, Giordano; Pitto, Lorenzo; Bisi, Maria Cristina;

Stagni, Rita; Cristofolini, Luca; Taddei, Fulvia

Variation in estimated contact and muscle forces

Wesseling, Mariska; Derikx, Loes; Meyer, Christophe; de

Groote, Friedl; Desloovere, Kaat; Verdonschot, Nico;

Jonkers, Ilse

A clinical web app for patient-specific multiscale simulations to plan vascular access surgery

Manini, Simone; Antiga, Luca; Huberts, Wouter; Remuzzi,

Andrea

Intrinsic signal quantification of bioluminescent light emitted from 3D cell culture systems

Lambrechts, Dennis; Roeffaers, Maarten; Kerckhofs,

Greet; Vande Velde, Greetje; Van de Putte, Tom;

Schrooten, Jan; Van Oosterwyck, Hans

Computational evaluation of the ANN approach for the prediction of proximal femoral loads

Garijo, Noelia; García-Aznar, José Manuel; Pérez, Mª

Ángeles

Spatial variability in cytosolic calcium transients in urothelial cells following wounding

Appleby, Peter; Walker, Dawn; Shabir, Saqib; Southgate,

Jennifer

10:45am Coffee

11:15am Plenary lecture

Predictive and mechanistic models of signalling networks from (phospho)proteomic data and prior knowledge

Saez-Rodriguez, Julio

12:00pm BONE MECHANICS I

Case specific finite element analysis of the strains experienced by osteocytes

Varga, Peter; Pacureanu, Alexandra; Langer, Max; Hesse,

Bernhard; Peyrin, Françoise; Raum, Kay

COMPUTATIONAL BIOLOGY (MOLECULAR SIGNALING)

DNA-methylation profiles in hyperplastic tissues

Przybilla, Jens; Binder, Hans; Loeffler, Markus; Galle,

Joerg

The role of local bone mineralization for mechanical strain amplification

Schneider, Philipp; Ruffoni, Davide; Sommer, Remo;

Chiapparini, Ilaria; Müller, Ralph

Mathematical modeling of endochondral ossification through mutual inhibition and bistability

Germain, Morgan; Kerkhofs, Johan; Geris, Liesbet

A new method to implement anisotropy in clinical continuum-FE analyses of the proximal femur

Hazrati Marangalou, Javad; Ito, Keita; Taddei, Fulvia; van

Rietbergen, Bert

Modeling signaling pathways in chondrocytes

Melas, Ioannis N; Chairakaki, Aikaterini D; Mitsos,

Alexander; Dailiana, Zoe; Provatidis, Christopher;

Alexopoulos, Leonidas G

Estimation of femoral FE strength for the fracture prediction in retrospective and prospective studies

Falcinelli, Cristina; Schileo, Enrico; Sigurdsson, Sigurdur;

Gudnason, Vilmundur; Taddei, Fulvia

Construction of an in silico model of hyaline cartilage and use for in silico experiments

Scholma, Jetse; Kerkhofs, Johan; Schivo, Stefano; Van de Pol, Jaco; Langerak, Rom; Van der Vet, Paul;

Karperien, Marcel; Geris, Liesbet; Post, Janine

1:00pm Lunch

2:30pm Plenary lecture

Multiscale models of tumor angiogenesis and therapeutic applications

3:15pm

Popel, Aleksander

ORTHOPAEDIC BIOMECHANICS

Screw insertion has a negative impact on periimplant bone quality

Steiner, Juri A.; Ferguson, Stephen J.; van Lenthe, G.

Harry

Multisite measure of micromotions around a cementless femoral stem in compression and torsion

Malfroy Camine, Valérie; Bauduin, Pierrick; Rüdiger,

Hannes; Pioletti, Dominique; Terrier, Alexandre

COMPUTATIONAL BIOLOGY (MULTI-SCALE)

Uncovering new mechanisms of individual stalk cell movement in angiogenesis: an in silico/in vivo approach

Bentley, Katie; Gerhardt, Holger

To heal or not to heal: modeling the influence of oxygen during fracture healing

Carlier, Aurélie; Geris, Liesbet; Van Oosterwyck, Hans

The influence of unilateral total hip arthroplasty on contact mechanics of non-operated limbs

Li, Junyan; Stewart, Todd; Jin, Zhongmin; Fisher, John;

Wilcox, Ruth

How tip cells contribute to Angiogenesis: Exploring specialized cell behavior in a cell-based model

Palm, Margriet M.; van Dijk, Erik; Merks, Roeland M.H.

A phenomenological model for the immunity response

Vermolen, Fred; Mul, Mathias; Gefen, Amit

A clustering model for the musculoskeletal disorders with fused data from multiple sources

Hoang, Tuan Nha; Dao, Tien Tuan; Denoeux, Thierry; Ho

Ba Tho, Marie Christine

4:15pm Poster session

7:00pm Reception

Date: Thursday, 12 September, 2013

9:00am Plenary lecture

In-silico organogenesis: multiscale modeling of limb development driven by quantitative imaging

Sharpe, James

9:45am BONE REMODELING I

On Wolff's Law in human bone

Christen, Patrik; Ito, Keita; Ellouz, Rafaa; Boutroy,

Stephanie; Sornay-Rendu, Elisabeth; Chapurlat, Roland; van Rietbergen, Bert

COMPUTATIONAL BIOLOGY (TISSUE ORGANIZATION)

A gene regulatory network model to assess the stability of the cartilage phenotype

Kerkhofs, Johan; Van Oosterwyck, Hans; Geris, Liesbet

Time-lapsed in vivo monitoring of peri-implant bone remodeling in a mouse model

Li, Zihui; Kuhn, Gisela; von Salis-Soglio, Marcella; Cooke,

Stephen John; Schirmer, Michael; Zimmermann,

Hanngörg; van Lenthe, G. Harry; Müller, Ralph; Ruffoni,

Davide

Cell-based modelling of phenotypic plasticity in healthy and cancerous tissues

Szabó, András; Merks, Roeland M.H.

Bone remodelling analysis of the scapula after a total shoulder arthroplasty

A cell-regulatory mechanism between wound contraction and tissue formation

Valero, Clara; Javierre, Etelvina; García-Aznar, José

Manuel; Gómez-Benito, María José

Quental, Carlos; Folgado, Joao; Fernandes, Paulo;

Monteiro, Jacinto

A self-organizing model of intestinal crypt morphology

Buske, Peter; Przybilla, Jens; Loeffler, Markus; Galle,

Joerg

Mechanobiological model for the simulation of

BMDD - Long-term effects of osteoporosis treatment

Santos, Luís; Fernandes, Paulo Rui; Rodrigues, Hélder;

Fonseca, João Eurico

10:45am Coffee

11:15am Plenary lecture

In-silico mechanobiology of bone

Müller, Ralph

12:00pm BONE REMODELING II

Long-term in silico bone adaptation in highresolution human bones

Badilatti, Sandro Domenico; Levchuk, Alina; Webster,

Duncan James; Müller, Ralph

CARTILAGE / CARDIOVASCULAR MECHANICS

Deciphering mechanoregulation of chondrogenic differentiation of human mesenchymal stem cells in fibrin-polyurethane composite scaffolds

Zahedmanesh, Houman; Stoddart, Martin; Lezuo, Patrick;

Alini, Mauro; Van Oosterwyck, Hans

Analytical and µFE-based modeling approaches for multiscale bone remodeling simulation studies A damage model for articular cartilage

Colloca, Michele; Ito, Keita; Van Rietbergen, Bert van Donkelaar, Corrinus C; Hosseini, Sayyed M; Wilson,

Wouter; Ito, Keita

A computational model for mechanostat regulation in bone based on biochemical osteocyte feedback

Pivonka, Peter; Buenzli, Pascal; Scheiner, Stefan;

Hellmich, Christian; Dunstan, Collin; Johnson, Mark;

Bonewald, Lynda

The improved elasticity-palpography technique: in vivo detection of vulnerable atherosclerotic plaques

Ohayon, Jacques; Deleaval, Flavien; Bouvier, Adeline; Le

Floc'h, Simon; Finet, Gérard; Cloutier, Guy; Pettigrew,

Roderic I.

Towards the creation of patient-specific bone remodeling models

Garijo, Noelia; Walscharts, Steven; Pérez, Mª Ángeles;

Vigneron, Lara; Vander Sloten, Jos; van Lenthe, Harry;

García-Aznar, José Manuel

Noninvasive constitutive model parameter identification method for arterial tissue

Smoljkic, Marija; Vander Sloten, Jos; Famaey, Nele

1:00pm Lunch

2:30pm Plenary lecture

Patient-specific image-based neurovascular modeling and interventional planning

Frangi, Alejandro

3:15pm CARDIOVASCULAR MECHANICS I

2D intracardiac flow estimation by combining speckle tracking with navier-stokes based

SPINE

Early degenerated lumbar motion segment: are they truly unstable?

regularization: a validation study

Gao, Hang; Bijnens, Nathalie; Coisne, Damien; Lugiez,

Mathieu; Kremer, Florence; Choi, Hon Fai; Rutten, Marcel;

D'hooge, Jan van Rijsbergen, Marc; Barthelemy, Véronique; Vrancken,

Anne; Crijns, Sjoerd; Wilke, Hans-Joachim; Ito, Keita

Factors influencing finite element models of functional spinal units and facet joint interactions

Multiphysics modeling to support the development of vascular ultrasound imaging

Tarsuslugil, Sami Metin; Hall, Richard M; Wilcox, Ruth K

Swillens, Abigail Emily; Lovstakken, Lasse; Degroote,

Joris; Vierendeels, Jan; Segers, Patrick

Investigating the effect of vertebroplasty on complex vertebral fractures

Koh, Ilsoo; Marini, Giacomo; Vogt, Patrick J; Ferguson,

Stephen J Computational modelling of aneurysm risk in giant cell arteritis (GCA)

Manhas, Varun; Piper, Jennifer E; Singh, Surjeet;

Ventikos, Yiannis; Luqmani, Raashid A

Simulating collagen phenotype and lamellae stiffness distribution in the intervertebral disc

Marini, Giacomo; Ferguson, Stephen J

Impact of pericardial effusion on cardiac mechanics in patients with dilated cardiomyopathy

Pasta, Salvatore; Scardulla, Francesco; Scardulla, Cesare

4:15pm Coffee

4:45pm MULTISCALE / SOFT TISSUE BIOMECHANICS

Elastic properties of the mineralized turkey leg tendon: experiment and model

Tiburtius, Sara; Schrof, Susanne; Varga, Peter; Raum,

Kay; Grimal, Quentin; Gerisch, Alf

COMPUTATIONAL BIOLOGY (CELL-MATRIX

INTERACTION)

Endothelial cell-fibrin interactions during blood vessel growth

Boas, Sonja E.M.; Weijers, Ester M.; Koolwijk, Pieter;

Merks, Roeland M.H.

A quantitative multiscale approach to the fibrillar structure and elasticity of collagen

Morin, Claire; Hellmich, Christian; Henits, Peter

A numerical model of tissue adaptation by cell traction and collagen remodeling

Heck, Tommy AM; Wilson, Wouter; Foolen, Jasper; Ito,

Keita; van Donkelaar, Corrinus C

Development and validation of a patient-specific finite element head model

Tse, Kwong Ming; Tan, Long Bin; Lim, Siak Piang; Lee,

Heow Pueh

Matrix geometry determines optimal cancer migration strategy and modulates response to intervensions

Tozluoglu, Melda; Tournier, Alexander L.; Jenkins, Robert

P.; Manning, Cerys S.; Bates, Paul A.; Sahai, Erik

Dynamic finite element modeling of transcrestal sinus membrane elevation for maxillary bone augmentation

Pommer, Bernhard; Unger, Ewald; Hof, Markus; Leuridan,

Steven; Famaey, Nele

Initial cell spreading investigated by a new deformable cell model

Odenthal, Tim; Smeets, Bart; Van Liedekerke, Paul;

Tijskens, Engelbert; Ramon, Herman; Van Oosterwyck,

Hans

8:00pm Conference Dinner

Date: Friday, 13 September, 2013

9:00am Plenary lecture

Biomechanics as a tool to functionalize biomaterials

Pioletti, Dominique

9:45am CARDIOVASCULAR MECHANICS II

Finite element modelling of coated biocorrodible stents

Debusschere, Nic; De Beule, Matthieu; Segers, Patrick;

Dubruel, Peter; Verhegghe, Benedict

Coupling of plaque formation and treatment of atherosclerosis with stent heating

Filipovic, Nenad; Nikolic, Dalibor; Milosevic, Zarko;

Saveljic, Igor; Exarchos, Themis; Parodi, Oberdan

Shape optimization of a cardiovascular stent

Ribeiro, Nelson da Silva; Folgado, João; Rodrigues,

Hélder

TISSUE ENGINEERING

Congenital pseudarthrosis of the tibia: a mathematical approach

Van Schepdael, An; Carlier, Aurélie; Ashbourn, Joanna

M.A.; Nica, Ioana; Kerkhofs, Johan; Geris, Lies

Individual-based modelling of the mechanical microenvironment in microbead cell expansion

Smeets, Bart; Odenthal, Tim; Tijskens, Engelbert; Ramon,

Herman; Van Oosterwyck, Hans

A model for cell/matrix growth on 3D surfaces: a coupling of level set method and brinkman equation

Guyot, Yann; Papantoniou, Ioannis; Chai, Yoke Chin;

Schrooten, Jan; Geris, Liesbet

The potential of sub-cycling to speed up fluidstructure interaction simulations

Taelman, Liesbeth; Degroote, Joris; Vierendeels, Jan;

Segers, Patrick

Pore width regulates human bone marrow cell invasion rate and actin organisation

Sengers, Bram Gijsbert; Bouropoulos, Nikolaos; Catt,

Chris J; Please, Colin P; Knychala, Jonathan

10:45am Coffee

11:15am Plenary lecture

Multiscale modeling and simulation of cytoskeletal actin filaments

Adachi, Taiji

12:00pm BONE MECHANICS II

Sclerostin is locally regulated in an in vivo model for load-induced trabecular bone adaptation

Trüssel, Andreas J; Webster, Duncan J; von Salis-Soglio,

Marcella; Kuhn, Gisela A; Müller, Ralph

CELL MECHANICS

Lipid Droplet Contents Determines the Cellular

Stiffness in Maturing Adipocytes

Katzengold, Rona; Shoham, Naama; Girshovitz, Pinhas;

Shaked, Natan; Benayahu, Dafna; Gefen, Amit

Computational models for predicting canine long bone mechanical behavior up to fracture

Laurent, Cédric P; Böhme, Beatrice; D'otreppe, Vinciane;

Balligand, Marc; Ponthot, Jean-Philippe

Morphological determinants of hip instability

Vogt, Patrick J.; Leunig, Michael; Zaltz, Ira; Ferguson,

Stephen J.

Simulation model for 3D Traction Force Microscopy experiments of cells lying on an elastic hydrogel

Jorge-

Peñas, Alvaro; Muñoz-Barrutia, Arrate; de-Juan-

Pardo, Elena M.; Ortiz-de-Solorzano, Carlos

Solving microscopic flow problems using stokes equations in SPH

Van Liedekerke, Paul; Odenthal, Tim; Smeets, Bart;

Tijskens, Engelbert; Ramon, Herman

A musculoskeletal numerical model of total knee replacement with the focus on the patella modelling

Latypova, Adeliya; Levrero Florencio, Francesc; Pioletti,

Dominique; Jolles, Brigitte; Terrier, Alexandre

1:00pm Closing ceremony

Modeling flow-induced deformation of osteocyte process in canaliculus

Kameo, Yoshitaka; Yamamoto, Ryuta; Ootao, Yoshihiro;

Ishihara, Masayuki; Kamioka, Hiroshi; Adachi, Taiji

Poster session (Wednesday, 11 September, 2013

,

4:15 – 5.45 pm)

A multiscale immune system simulator for the onset of type 2 diabetes

Castiglione, Filippo

Understanding and simulation of the cell decisions leading to bone formation and remodeling

Assar, Rodrigo; Montecino, Martin A

Towards a stochastic model of the human femur

Wille, Hagen; Rank, Ernst; Yosibash, Zohar

Three dimensional flow modelling inside a differential laminar flow bioreactor filled with porous media

Weyand, Birgit

The volumetric modelling of heterogeneous material parameters distribution of human bone

John, Antoni; Duda, Matthew

The metabolic regulation of angiogenesis: a computational approach

Cruys, Bert; Bentley, Katie; Gerhardt, Holger; Carmeliet, Peter

The importance of biological variation: a meta-analysis of biomechanics modeling practices

Cook, Douglas

Stiffness changes in adipocytes during their differentiation process

Shoham, Naama; Girshovitz, Pinhas; Tzvi Shaked, Natan; Benayahu, Dafna; Gefen, Amit

SPECT-like representation of analytical simulation of inhaled aerosol deposition within the lungs

Pichelin, Marine; Dubau, Cécile; Montesantos, Spyridon; Majoral, Caroline; Katz, Ira; Conway, Joy; Fleming, John; Caillibotte,

Georges

Progress towards an in silico framework for vascular mechanobiology research

Bernabeu, Miguel Oscar; Osborne, James Mark

PhysioDesigner and Flint: a platform for multilevel modeling of physiological systems and simulation

Asai, Yoshiyuki; Abe, Takeshi; Oka, Hideki; Okita, Masao; Okuyama, Tomohiro; Hagihara, Ken-ichi; Kurachi, Yoshihisa; Kitano,

Hiroaki

OFF influences microtubules and primary cilia mechanics

Correia Espinha, Lina; A. Hoey, David; R. Fernandes, Paulo; C. Rodrigues, Helder; R. Jacobs, Christopher

Numerical acceleration techniques for a multiscale model of tumor growth

Lejon, Annelies; Samaey, Giovanni; Roose, Dirk

Mathematical modelling and simulations of thrombus evolution using a simplified model

Pavlova, Jevgenija; Fasano, Antonio; Janela, João; Sequeira, Adélia

Insulin sensitivity during hypothermia in critically ill patients

Sah Pri, Azurahisham Bin; Chase, J. Geoffrey; J. LeCompte, Aaron; M.Shaw, Geoffrey; Presier, Jean-Charles; Taccone, Fabio;

Penning, Sophie; Desaive, Thomas

Implant osseointegration: poromechanics, morphogene, animal model and clinical considerations

Swider, Pascal; Khalil, Georges; Bechtold, Joan Elisa beth; Søballe, Kjeld

Identification of the anisotropic stress-strain relationship of human aortic walls in vivo

Wittek, Andreas; Konstaninos, Karatolios; Peter, Bihari; Thomas, Schmitz-Rixen; Sebastian, Vogt; Rainer, Moosdorf; Christopher,

Blase

Evaluation of particle deposition efficiency in human oral passage: a CFD study

Zhu, Jian Hua; How, Hong Siang; Wang, De Yun; Lee, Shu Jin; Lee, Heow Pueh

Computational model of passive diffusion across the retinal pigment epithelium

Tervonen, Aapo; Vainio, Iina; Nymark, Soile; Hyttinen, Jari

Comparison of muscle force estimation methods to predict humeral head translation after total shoulder arthroplasty

Engelhardt, Christoph; Malfroy Camine, Valérie; Ingram, David; Müllhaupt, Philippe; Farron, Alain; Pioletti, Dominique; Terrier,

Alexandre

Change in mechanical properties of the rod reduces the loosening risk of the screw in spinal fusion

Tawara, Daisuke; Noro, Kenta; Tsujikami, Tetsuya; Okamoto, Yoshiyuki; Murakami, Hideki

Characterization of human ex-vivo abdominal wall material properties by reverse engineering

Nováček, Vít; Turquier, Frédéric

Cellular automata model to simulate osteogenesis and bone fracture healing

Arias Moreno, Andrés Julián; Tovar Pérez, Andrés; Garzón-Alvarado, Diego Alexander

Bilevel structured dynamic simulator for predicting E. coli adaptation for mercury uptake in a bioreactor

Maria, Gheorghe; Luta, Ionela

ANIMO: a tool for modelling biological pathway dynamics

Schivo, Stefano; Scholma, Jetse; Wanders, Brend; Urquidi Camacho, Ricardo A.; van der Vet, Paul E.; Karperien, Marcel;

Langerak, Rom; van de Pol, Jaco; Post, Janine N.

ALCIMI: a 3D integrative tool to visualize and correlate experimental and simulation data

Dubau, Cécile; Pichelin, Marine; Montesantos, Spyridon; Majoral, Caroline; Katz, Ira; Conway, Joy; Fleming, John; Caillibotte,

Georges

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