Molecular Biology Exam Study Guide Vocabulary Water Hydrophyllic Hydrophobic Polarity Dipoles Electronegativity Electrons Protons Neutrons Cohesion Adhesion Thermal Properties Specific Heat Latent Heat of Evaporation Boiling Point Solvent Properties Polar Substances Nonpolar Substances Density Hydrogen Bonding Intermolecular Forces Methane Water Blood Transport Polar Nonpolar Hydroxyl Group Glucagon Beta-Cells Alpha-Cells Products Reactants Temperature on Enzymes Acidity and Alkalinity on Enzymes Substrate Concentration Sweating Soluble Insoluble Monosaccharide Disaccharide Polysaccharide Condensation Reaction Hydrolysis Reaction Anabolic Process Catabolic Process Glucose Fructose Galactose Maltose Sucrose Lactose Starch Glycogen Hydroxyl Group Alpha-Glucose Beta-Glucose Carbon-1 Carbon-4 Glycosidic Bond Amylose Amylopectin Liver Cells Insulin Carbon Nitrogen Oxygen Hydrogen Triglycerides Fats Oils Coronary Heart Disease Fatty Acid Glycerol Ester Bond Body Mass Index Saturated Fatty Acid Unsaturated Fatty Acid Polyunsaturated Fat Monounsaturated Fat Trans-Fat Cis-Fat Correlation Causation Adipose Tissue Alpha Carbon Amino Group Glycine Alanine Glutamic Acid Serine Primary Structure Secondary Structure Tertiary Structure Quaternary Structure Peptide Bond Alpha Helix Beta-Pleated Sheet Polypeptide Chain Dipeptide Hemoglobin Disulfide Salt Bridges Van der Waal Forces Rhodopsin Insulin (repeat from saccharides) Immunoglobulins Collagen Spider Silk Catalysts Hormones Rubisco Myosin Tubulin Hemoglobin Histones Pectin Denaturation Acids and Bases Meselson and Stahl DNA Replication Transcription Translation Protein Synthesis Central Dogma RNA Polymerase DNA Polymerase III Antisense Strand Messanger RNA Sense Strand Helicase DNA and RNA Transfer RNA Ribosomal RNA Active Site Enzymes Understandings and Content 1. Write definitions for all the words above in your own words. 2. State and define special properties of water. 3. Explain how hydrogen bonding and water polarity affects each water property. Dinh 1 Molecular Biology Exam Study Guide 4. Draw a water molecule with all correct dipoles. 5. Explain why “like dissolves like”. 6. Contrast the difference between a monomer and polymer. 7. State all the monomers and polymers of the 4 macromolecules. 8. State the number of bonds that carbon, nitrogen, oxygen, and hydrogen can form. 9. Explain the difference between catabolic and anabolic processes. 10. Explain the difference between alpha-glucose and beta-glucose by drawing the molecular structures and stating which polysaccharide each type can form. 11. State all the chemistry functional groups discussed in class. 12. State the difference between a correlation and a causal relationship. 13. Explain how the condensation reaction of glycerol and 3 fatty acids produces a triglyceride molecule. 14. Contrast the difference between primary, secondary, tertiary, and quaternary structure in proteins. 15. Explain why proteins have 3-D structure. 16. Explain how polarity of R-Groups is capable of forming hydrogen bonds between other R-Groups. 17. Contrast the differences between the structure of DNA and RNA. 18. Explain the process of DNA Replication, Transcription, and Translation. 19. Explain the process of enzymes catalysis. 20. Explain and draw the different environmental factors that affect enzyme function or enzyme rate. Applications 1. Contrast the difference between the properties of water and methane. 2. Explain how the function of sweating is an example of the properties of water. 3. Describe which components of blood transport is soluble in water and which are insoluble. Explain why this is true. 4. Explain the benefits of storing glycogen in the liver of mammals. 5. Contrast the difference between the molecular structure of amylose, amylopectin, and glycogen. 6. Explain how glucagon is used and produced in the body. 7. Explain why diabetic patients need insulin injections. 8. Contrast the difference between insulin resistance and insulin deficiency. 9. Contrast the difference between triglycerides and glycogen as energy stores. 10. Outline how the Maasai people are exceptions to the positive correlation between saturated fats and CHD. 11. Explain the role and structure of hemoglobin (Hb) for humans. 12. List all of the protein functions discussed in class and give one specific example of each. 13. Explain how Meselson and Stahl discovered the replicating mechanism of DNA. 14. Skills 1. 2. 3. 4. 5. 6. 7. 8. Draw a water molecule with the correct dipoles. Draw an alpha-glucose and a beta-glucose. Draw a ribose and deoxyribose molecule. Draw a condensation reaction of maltose. Draw a hydrolysis reaction of glycogen by glucagon. Draw a glycerol and fatty acid reaction to form a triglyceride. Calculate the BMI of a patient with a mass of 75 kg and 2.45 meters. Draw the molecular structure of glycine, alanine, glutamic acid, and serine. Dinh 2 Molecular Biology Exam Study Guide 9. Draw the molecular structure of a dipeptide and polypeptide. 10. Draw and label a hemoglobin molecule. 11. Draw a Beta-Pleated sheet and an alpha helix in the context of peptides. 12. List the possible polypeptides that can be formed between the amino acids alanine, glycine, serine, and glutamic acid. State the number of possibilities. 13. Draw the monomer and polymers of nucleic acids. Relating Concepts Questions 1. The alpha helix is seen in many instances in molecular biology. List all the times we have seen them in our studies. 2. Structure determines function. Outline how structure contributes to the function of saturated fats, unsaturated fats, trans-fats, amylose, amylopectin, nucleotides, and proteins. Dinh 3