CURRICULUM VITAE
Jirong Long, Ph.D.
Office Address:
Office Phone:
Office Fax:
Marital Status:
Children:
2525 West End Avenue
8th floor, Office Suite 800
Vanderbilt University School of Medicine
Nashville, TN 37203-1738
(615)343-6741
(615)322-0502
Married
Virginia, Victoria, Vaden, and Vannessa
EDUCATION
1994
Bachelor of Science
Sichuan Agricultural University in Yaan, Sichuan, China
1997
Master of Philosophy in Genetics
Sichuan Agricultural University in Yaan, Sichuan, China
2001
Doctorate of Philosophy in Genetics
Sichuan Agricultural University in Yaan, Sichuan, China
2000- 2001 Postgraduate Training in Population Genetics
Molecular Biology, Kunming Institute of Zoology, the Chinese Academy of Sciences, China.
2002-2004 Postgraduate Training in Molecular Genetics
Creighton University, Omaha, Nebraska, USA
ACADMEIC APPOINTMENTS
1998-1999
Assistant Professor, Sichuan Academy of Animal Sciences in China.
2000-2001
Research Fellow, Kunming Institute of Zoology, the Chinese Academy of Sciences.
2001-2002
Associate Professor, Sichuan Academy of Animal Sciences in China.
2002
Post-Doctoral Research Fellow, Osteoporosis Research Center, Creighton University.
2002-2004
Research Associate, Osteoporosis Research Center, Creighton University.
2004-2006
Research Assistant Professor, Molecular Epidemiology, Vanderbilt University
2004-present Member, Vanderbilt-Ingram Cancer Center
2006-2013
Assistant Professor, Vanderbilt University
2012-present Member, Vanderbilt Center for Quantitative Sciences
2013-present Associate Professor, Vanderbilt University
PROFESSIONAL ORGANIZATIONS
American Society of Human Genetics
American Association of Cancer Research
International Chinese Hard Tissue Society
PROFESSIONAL ACTIVITIES
Scholarship and awards
1991-1994
Scholarship for Excellent Student Achievement, Sichuan Agricultural University
1999
Award for Science and Technology Advancement of Sichuan Province (second place,
research team member), Sichuan Committee for Science and Technology
Editorial Board member
2013-present Journal of Molecular & Genetic Medicine
2005-present Genomics, Proteomics & Bioinformatics
2012-present Case Reports in Genetics
2012-present International Journal of Molecular Epidemiology and Genetics
2012-present Plos One
Grant Reviewer
04/2011
Cancer Research United Kingdom
04/2012
Israel Science Foundation
03/2012
World Cancer Research fund International Regular Grant Programme
04/2012
Special Review Panel (ZCA1 SRLB-B (M2)) for the NCI Cancer Research Infrastructure
Support for HMOs, NIH
08/2012
Dutch Breast Cancer Foundation
01/2012 Vanderbilt University Internal Study Section (01/2012, 05/2012, 09/2012)
Article Reviewer American Journal of Epidemiology, BMC Molecular Biology, BMC Genomics, Bone,
Cancer Epidemiology Biomarkers & Prevention, Clinic Genetics, Engineering in Life Sciences, Human
Genetics, Human Molecular Genetics, Human Reproduction Update, International Journal of
Dermatology, Journal of Human Genetics, Molecular and Cellular Biochemistry, OMICS: A Journal of
Integrative Biology, Nature Genetics, Osteoporosis International, Plos One, The Behavioral and Brain
Functions.
Invited Talks
04/2004
05/2004
07/2004
08/2004
06/2010
University of Chicago, seminar title: Genetics of osteoporosis
Northwestern University, seminar title: Genetics of osteoporosis
Wake Forest University, seminar title: Genetics of osteoporosis
Vanderbilt epidemiology center, seminar title: Genetics of osteoporosis
Kunming Institute of Zoology, Division of Medical Genetics & Evolutionary Medicine, Title:
“Genome Wide Association Study of Breast Cancer”, Kunming, China
07/2010
Vanderbilt-Shanghai Chronic Disease Research Training Program Molecular and Genetic
Epidemiology for Chronic Diseases Workshop Program, Seminar Title: “MicroRNA and
Mitochondrion DNA variations”, Shanghai, China
04/2011
Vanderbilt Epidemiology Center Seminar Series, Seminar Title: Evaluation of Genomewide Association Study-identified Type 2 Diabetes Loci in African Americans
06/2011
Kunming Institute of Zoology, Division of Medical Genetics & Evolutionary Medicine, Title:
“Genetic Epidemiology of Breast Cancer in Asia”, Kunming, China
08/2011
Vanderbilt epidemiology center, seminar title: GWAS data in Asian Studies
04/2012
Medical College of Wisconsin, Human and Molecular Genetics Center, Seminar Title: “A
Genome-Wide Survey of Copy Number Variation in Breast Cancer”, Milwaukee, WI, USA
05/2012
Genomic Analysis of Diseases Conference, organized by Nature Genetics and Anhui
Medical University, Seminar Title: “Genetic Epidemiology Consortia of Breast and
Colorectal Cancer in Asia”, Hangzhou, China
06/2012
Workshop for Chronic Disease Epidemiology and Prevention, Seminar Title: “Introduction
to Genetic Epidemiology”, Shanghai, China
07/2012
GAME-ON (Genetic Associations and Mechanisms in Oncology): Fifth Plenary Meeting,
Seminar Title: “Shanghai Breast Cancer Sequencing”, Bethesda, MD, USA
10/2012
Wake Forest University, Seminar Title: “Copy Number Variation and Breast Cancer Risk”,
Winston-Salem, NC, USA
11/2012
Vanderbilt University EPID 333 guest lecture, Title: “Quality Control in Next-Generation
Sequencing Study”
01/2013
GAME-ON (Genetic Associations and Mechanisms in Oncology): Sixth Plenary Meeting,
Seminar Title: “Pilot Whole Genome Sequencing of 200 Early Onset and Family-HistoryPositive Breast Cancer Cases”, Bethesda, MD, USA
03/2013
Mayo Clinic Cancer Center, Seminar Title: “Copy Number Variation and Breast Cancer
Risk”, Rochester, MN, USA
04/2013
Vanderbilt University Diabetes Research and Training Center, Seminar Title: “Genetics of
Type 2 Diabetes: Common and Rare Variants”, Nashville,TN, USA
RESEARCH SUPERVISION:
Primary Mentor:
Pre-doctoral Students:
2012-present: Mi-Ryung Han, MS: Genetic studies for breast cancer
2011 Hyuna Sung: Meta analyses to discover novel genetic loci for breast cancer risk
Postdoctoral Fellows:
2009-present Ben Zhang, MD, PhD: Genome wide association studies for breast cancer, colorectal
cancer and breast cancer survival
2010-present Ryan Delahanty, PhD: Copy number variants and breast cancer risk
2008-present Jiajun Shi, PhD: Genetic factors for breast cancer risk and obesity
2012-present Yanfeng Zhang, PhD: Next generation sequencing to discover novel genetic loci for breast
cancer
Visiting scholars:
2012 Ji-Yeob Choi, PhD: Meta analyses to discover novel genetic loci for breast cancer survival
2011-2012 Chong Shen, PhD: Genetic factors for menopause age
Programmer:
2009-present Jing He, MS: Genetic and bioinformatics analyses for complex diseases, such as breast
cancer risk and survival, endometrial cancer risk, type 2 diabetes and obesity
2011-2011 Dexter Duncan, BS: Genetic analyses for complex disease
Undergraduate student:
2011-2012 Feiran Hao, Vanderbilt University: Next generation sequencing studies
Co-Mentors/Supervisors for faculty members, postdoc fellows and visiting scholars in their
genetics training:
Faculty members:
2011-present Alicia Beeghly-Fadiel, PhD, Assistant Professor
2009-2011 Sandra L. Halverson (Deming), PhD, Assistant Professor
2009-present Raquel Villegas, PhD, Assistant Professor
2010-present Wanqing Wen, MD, Research Associate Professor
2009-present Hui Cai, MD, PhD, Research Assistant Professor
2008-2011 Shimian Qu, MD, PhD, Research Assistant Professor
2012-present, Yan Guo, PhD, Research Assistant Professor
2009-present Chuanzhong Ye, MD, PhD, Research Instructor
2009-2012 Tsogzolmaa Dorjgochoo, MD, PhD, Research Instructor
2013- present Sarah Nechuta, MPH, PhD, Assistant Professor
Postdoctoral/Visiting Fellows/Pre-doctoral Students:
2006-2011 Alicia Beeghly-Fadiel, PhD, Postdoc fellow
2006-2009 Sandra L. Halverson (Deming), PhD, Postdoc fellow
2009-2012 Zhenming Fu, MD, PhD, Postdoc fellow
2009-2012 Guoliang Li, PhD, Postdoc fellow
2008-2011 Xiaoli Chen, PhD, Postdoc fellow
2010-2012 Xiangyu Ma, Pre-doctoral Student
2006, Wanghong Xu, PhD, Visiting Scholar
2012-present, Dennis Di Xuan, undergraduate student
2013-present, Shaneda Warren Andersen, PhD, Postdoc fellow
ACTIVE GRANT SUPPORT:
5R01 CA137013 (Long)
07/01/09 - 06/30/14
NIH/NCI
$360,058 (annual direct)
Genome-wide Copy Number Variation and Breast Cancer Risk
1.80 calendar months
15%
To conduct a genome-wide association study to search for copy number variation (CNV), for breast
cancer risk.
1R01CA148667
02/15/2011-01/31/2016
0.60 calendar months
(MPI: Zheng/Long)
NIH/NCI
$413,727 (annual direct)
5%
Consortium Study to Identify Breast Cancer Susceptibility Loci
To conduct a large consortium study in Asians to search and validate sequence variants for breast
cancer risk.
3R01CA148667-02S1
02/15/2012-01/31/2016
1.44 calendar months
(MPI: Long/Zheng)
NIH/NCI
$100,000 (annual direct)
12%
Consortium Study to Identify Breast Cancer Susceptibility Loci (Supplement)
To evaluate allelic imbalance in relation to breast cancer risk.
1R01HG007112 (Site PI: Long)
05/01/2012-03/31/2017
1.80 calendar months
15%
NIH/NCI – (PI: Donald W. Bowden,
$39,338 (annual direct)
Wake Forest)
Exome sequencing to Identify CVD Risk Variants in Hispanics & African Americans
To direct the component of exome sequencing data processing and analysis for a large consortium
study.
1R01CA158473 (Zheng)
05/10/2012-3/31/2017
0.36 calendar months
NIH/NCI
$758,619 (annual direct)
3%
Genome Sequencing to identify novel genetic factors for breast cancer risk
To conduct a large exome sequencing study to identify low-frequency variants for breast cancer.
1U01 CA161045 (Cai)
04/01/2012-03/31/2017
0.30 calendar months
NIH/NCI
$411,388 (annual direct)
2.5%
Exome Sequencing to identify Novel Genetic Factors for Lung Cancer in Nonsmokers
To conduct a large exome sequencing study to identify low-frequency variants for lung cancer.
2R01 CA092447 (Blot)
09/26/2011-08/31/16
1.20 calendar months
NIH/NCI
$4,260,348 (annual direct)
10%
Southern Community Cohort Study
To establish a large cohort of African and Caucasian Americans to investigate risk factors for cancer
and other chronic diseases.
5R01 CA124558 (Zheng)
07/15/08 – 05/31/13
0.18 calendar months
NIH/NCI
$379,442 (annual direct)
1.5%
Genetic Factors for Breast Cancer – A Genome Wide Study
To conduct a genome-wide association study to identify genetic risk factors for breast cancer.
5U19CA148065 (Site PI: Zheng)
07/15/10-06/30/14
0.48 calendar months
(PI: Hunter/Harvard -Prime)
NIH/NCI
$210,195 (annual direct)
4%
Discovery, Biology and Risk of Inherited Variants in Breast Cancer
To identify novel risk variants for breast cancer and fine-map known loci to discover causal variants.
5R01 CA064277 (Shu)
08/05/08 - 05/31/13
0.24 calendar months
NIH/NCI
$329,251 (annual direct)
2%
Shanghai Breast Cancer Study
To comprehensively evaluate genetic markers in relation to breast cancer risk and survival.
COMPLETED GRANT SUPPORT:
1UL1RR024975 (Long)
5/22/08- 6/30/10
CTSA grant
NIH Vanderbilt CTSA
Genome-wide Association Study (GWAS) of Type-2 Diabetes in a Chinese Population
To conduct a pilot genome-wide association study of Type-2 Diabetes in Chinese
5R01 CA121060 (Fowke)
09/28/07 – 07/31/12
NIH/NCI
$346,614 (annual direct)
Genetic and Endocrine Pathways Linking Obesity with Prostate Cancer
The propose of this study is to 1) to determine the role of the total body adiposity in prostate
carcinogenesis; 2) to determine the role of visceral adiposity in prostate carcinogenesis; 3) to conduct a
matched case-control investigation of the association between blood biomarkers of total body adiposity or
visceral adiposity and PIN.
5R01 CA118229 (Shu)
09/30/07 - 07/31/12
NIH/NCI
$212,177 (annual direct)
Breast Cancer Survival: Lifestyle and Genetic Determinants
To identify the genetic and lifestyle factors that influence the progression of breast cancer and overall
survival.
5R01 AT004660 (Dai)
06/01/08 – 05/31/12
NIH
$284,213 (annual direct)
Dietary Calcium and Magnesium, Genetics, and Colorectal Adenoma
To identify people at a high risk of colorectal adenoma and to develop personalized strategies to
prevent occurrence of colorectal adenoma.
5R01 CA122756 (Cai)
07/15/08-05/31/12
NIH/NCI
$353,607 (annual direct)
Cell Cycle/Apoptosis Gene Variants and Breast Cancer Risk
To evaluate whether genetic polymorphisms may be associated with the risk of specific subtypes of
breast cancer.
5K07 CA122451 (Shrubsole)
06/01/07 - 05/30/12
NIH/NCI
$121,350 (annual direct)
Diet, Genetics, Epigenetics & Colorectal Adenoma Risk
To study genetic and epigenetic markers and their interaction with dietary factors in the risk of colorectal
adenomas.
5P50 CA090949 (Carbone)
04/01/07 – 03/31/12
NIH/NCI
$1,462,958 (annual direct)
SPORE in Lung Cancer
To evaluate potential modifying effects of genetic factors in the association of NSAID use and lung
cancer risk.
AICR/ Investigator Initiated Grant (Dai)
01/01/09-12/31/11
AICR - #0874-REV
$75,000 (annual direct)
Magnesium, Calcium, and Risk for Colorectal Adenoma
To investigate the relationship of urinary excretion of calcium and total erythrocyte magnesium with
colorectal adenoma.
4R00CA126978 (Deming)
07/01/11-12/30/11
NIH/NCI
$155,435 (annual direct)
Circadian and Melatonin Pathway Genes in Breast Cancer Risk
To study the role of circadian and melatonin genes, and the interaction those genes with light at night
and sleep exposures in breast cancer risk.
R01 CA122756 (Cai)
12/01/07-11/30/11
NIH/NCI
$335,607 (annual direct)
Cell Cycle/Apoptosis Gene Variants and Breast Cancer Risk
To evaluate whether genetic polymorphisms in cell cycle/apoptosis pathways are associated with risk of
breast cancer.
1R01 CA118229 (Shu)
09/30/07 – 07/31/11
NIH/NCI
$212,177 (annual direct)
Breast Cancer Survival: Lifestyle and Genetic Determinants
To identify the genetic and lifestyle factors that influence the progression of breast cancer and survival.
1R01 CA122364 (Yang)
09/20/07 – 07/31/11
NIH/NIC
$190,000(annual direct)
Inflammatory Biomarkers and Colorectal Cancer Risk
To evaluate the associations between biochemical and genetic markers of inflammation and CRC risk.
PUBLICATIONS:
1999
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2000
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12.
Long JR, Jiang B, Xie X, Tang L. 1999. Estimating breeding value of meat rabbit by using BLUP (in
Chinese). Sichuan Animal husbandry and veterinary, 96-97 (in Chinese).
Long JR, Jiang B, Xie X, Tang L. 1999. RAPD and utilization in animal genetics and breeding.
Sichuan Animal husbandry and veterinary, suppl. 60-62 (in Chinese).
Tang LM, Xie XH, Long JR, Lan YY. 1999. Culture and utilization of the new specialized rabbit, strain
A. Sichuan Animal husbandry and veterinary, 90-92 (in Chinese).
Xie XH, Tang LM, Long JR, Huang DP, Lan YY, Lei M, Xiang JL, Zhang J. 1999. Study on the mating
utilization of the meat rabbit new line A. Southwest China Journal of Agricultural Sciences. 13:92-95.
Long JR, Jiang B et al. 2000. Estimation of genetic parameters for reproduction traits in strain A of
rabbit J. of Sichuan Agricultural University. 18: 179-82 (in Chinese).
Long JR, Jiang B, Xie X, Tang L. 2000. Estimation of genetic parameters for growth traits in meat
rabbit line A. J. of Sichuan Agricultural University. 18: 62-64 (in Chinese).
Long JR, Xie XH, Li H. 2000. Study progress on rabbit about biochemistry traits. Sichuan Animal
husbandry and veterinary, 27: 31-32 (in Chinese).
Long JR, Xie XH, Li H. 2000. Study progress on rabbit about cellular traits. Chinese J. of Rabbit
Farming. (1), 19-20 (in Chinese).
Long JR, Xie XH, Li H. 2000. Study progress on rabbit about molecular genetics. Chinese J. of
Rabbit Farming. 22-24 (in Chinese).
Xie X, Long JR, Tang L. 2000. Measurement on rabbit growth and partial character and speciality.
Chinese J. of Rabbit Sci. (1), 18-20 (in Chinese).
Xie X, Long JR, Tang L. 2000. The effect of appending Yilisu on growing rabbit. Sichuan Animal
husbandry and veterinary, (2), 20 (in Chinese).
Xie X, Tang L, Long JR. 2000. Study on the mating utilization of the meat rabbit new line A.
Southwestern agriculture transaction, (1), 92-95 (in Chinese).
Yu H, Li H, Long JR. 2000. Meat rabbit growth line. Grass eating animal. 109:18-20 (in Chinese).
13.
2001
14. Xie X, Lei L, Long JR. 2001. The effect of appending Tiancaijian on growing rabbit. Chinese J. of
rabbit farming (1), 5-6 (in Chinese)
2002
15. Li H, Qiu XP, Long JR. 2002. Genetic Study about the color of feather and skin on the Black2bone
Fowls. Chin. J. of Ani. Sci. 38:45-46. (in Chinese)
16. Li H, Qiu XP, Long JR. 2002. Study progress on black chicken. Animal science and veterinary. 33-35
(in Chinese).
2003
17. Dvornyk V, Liu XH, Shen H, Lei SF, Zhao LJ, Huang QR, Qin YJ, Jiang DK, Long JR, Zhang YY,
Gong G, Recker RR, Deng HW. Differentiation of Caucasians and Chinese at bone mass candidate
genes: implication for ethnic difference of bone mass. Ann Hum Genet. 2003 May;67(Pt 3):216-27.
18. Long JR, Liu P, Zhang Y, Shen H, Liu Y, Dvornyk V, Deng HW. Interaction effects between estrogen
receptor alpha gene, vitamin D receptor gene, age, and sex on bone mineral density in Chinese. J
Hum Genet. 2003;48(10):514-9.
19. Long JR, Liu PY, Liu YJ, Lu Y, Xiong DH, Elze L, Recker RR, Deng HW. APOE and TGF-beta1
genes are associated with obesity phenotypes. J Med Genet. 2003 Dec;40(12):918
20. Xiong DH, Long JR, Recker RR, Deng HW. Pharmacogenomic approaches to osteoporosis.
Pharmacogenomics J. 2003;3(5):261-3.
21. Zhang YY, Long JR, Liu PY, Liu YJ, Shen H, Zhao LJ, Deng HW. Estrogen receptor alpha and
vitamin D receptor gene polymorphisms and bone mineral density: association study of healthy preand postmenopausal Chinese women. Biochem Biophys Res Commun. 2003 Sep 5;308(4):777-83.
2004
22. Dvornyk V, Long JR, Xiong DH, Liu PY, Zhao LJ, Shen H, Zhang YY, Liu YJ, Rocha-Sanchez S, Xiao
P, Recker RR, Deng HW. Current limitations of SNP data from the public domain for studies of
complex disorders: a test for ten candidate genes for obesity and osteoporosis. BMC Genet. 2004
Feb 25;5:4.
23. Jian WX, Long JR, Deng HW. High heritability of bone size at the hip and spine in Chinese. J Hum
Genet. 2004;49(2):87-91.
24. Liu PY, Lu Y, Long JR, Xu FH, Shen H, Recker RR, Deng HW. Common variants at the PCOL2 and
Sp1 binding sites of the COL1A1 gene and their interactive effect influence bone mineral density in
Caucasians. J Med Genet. 2004 Oct;41(10):752-7.
25. Liu YJ, Rocha-Sanchez SM, Liu PY, Long JR, Lu Y, Elze L, Recker RR, Deng HW. Tests of linkage
and/or association of the LEPR gene polymorphisms with obesity phenotypes in Caucasian nuclear
families. Physiol Genomics. 2004 Apr 13;17(2):101-6.
26. Liu YZ, Xu FH, Shen H, Liu YJ, Zhao LJ, Long JR, Zhang YY, Xiao P, Xiong DH, Dvornyk V, Li JL,
Conway T, Davies KM, Recker RR, Deng HW. Genetic dissection of human stature in a large sample
of multiplex pedigrees. Ann Hum Genet. 2004 Sep;68(Pt 5):472-88.
27. Long JR, Liu PY, Liu YJ, Lu Y, Shen H, Zhao LJ, Xiong DH, Deng HW. APOE haplotypes influence
bone mineral density in Caucasian males but not females. Calcif Tissue Int. 2004 Oct;75(4):299-304.
28. Long JR, Liu PY, Lu Y, Xiong DH, Zhao LJ, Zhang YY, Elze L, Recker RR, Deng HW. Association
between COL1A1 gene polymorphisms and bone size in Caucasians. Eur J Hum Genet. 2004
May;12(5):383-8.
29. Long JR, Zhang YY, Liu PY, Liu YJ, Shen H, Dvornyk V, Zhao LJ, Deng HW. Association of estrogen
receptor alpha and vitamin D receptor gene polymorphisms with bone mineral density in Chinese
males. Calcif Tissue Int. 2004 Mar;74(3):270-6.
30. Long JR, Zhao LJ, Liu PY, Lu Y, Dvornyk V, Shen H, Liu YJ, Zhang YY, Xiong DH, Xiao P, Deng
HW. Patterns of linkage disequilibrium and haplotype distribution in disease candidate genes. BMC
Genet. 2004 May 24;5:11.
31. Shen H, Zhang YY, Long JR, Xu FH, Liu YZ, Xiao P, Zhao LJ, Xiong DH, Liu YJ, Dvornyk V, RochaSanchez S, Liu PY, Li JL, Conway T, Davies KM, Recker RR, Deng HW. A genome-wide linkage
scan for bone mineral density in an extended sample: evidence for linkage on 11q23 and Xq27. J Med
Genet. 2004 Oct;41(10):743
32. Zhao LJ, Liu PY, Long JR, Lu Y, Xu FH, Zhang YY, Shen H, Xiao P, Elze L, Recker RR, Deng HW.
Test of linkage and/or association between the estrogen receptor alpha gene with bone mineral
density in Caucasian nuclear families. Bone. 2004 Aug;35(2):395-402.
2005
33. Deng FY, Long JR, Lei SF, Li MX, Deng HW. Potential effect of inter-genic action on peak bone mass
(PBM) in Chinese females. Yi Chuan Xue Bao. 2005 Oct;32(10):1003-10.
34. Dvornyk V, Liu PY, Long JR, Zhang YY, Lei SF, Recker RR, Deng HW. Contribution of genotype and
ethnicity to bone mineral density variation in Caucasians and Chinese: a test for five candidate genes
for bone mass. Chin Med J (Engl). 2005 Aug 5;118(15):1235-44.
35. Jian WX, Long JR, Li MX, Liu XH, Deng HW. Genetic determination of variation and covariation of
bone mineral density at the hip and spine in a Chinese population. J Bone Miner Metab.
2005;23(2):181-5.
36. Jian WX, Yang YJ, Long JR, Li YN, Deng FY, Jiang DK, Deng HW. Estrogen receptor alpha gene
relationship with peak bone mass and body mass index in Chinese nuclear families. J Hum Genet.
2005;50(9):477-82. Epub 2005 Sep 14.
37. Liu PY, Zhang YY, Lu Y, Long JR, Shen H, Zhao LJ, Xu FH, Xiao P, Xiong DH, Liu YJ, Recker RR,
Deng HW. A survey of haplotype variants at several disease candidate genes: the importance of rare
variants for complex diseases. J Med Genet. 2005 Mar;42(3):221-7.
38. Liu YJ, Liu PY, Long JR, Lu Y, Elze L, Recker RR, Deng HW. Linkage and association analyses of
the UCP3 gene with obesity phenotypes in Caucasian families. Physiol Genomics. 2005 Jul
14;22(2):197-203.
39. Long JR, Liu PY, Lu Y, Dvornyk V, Xiong DH, Zhao LJ, Deng HW. Tests of linkage and/or association
of TGF-beta1 and COL1A1 genes with bone mass. Osteoporos Int. 2005 Jan;16(1):86-92.
40. Long JR, Xiong DH, Recker RR, Deng HW. The genetics of osteoporosis. Drugs Today (Barc). 2005
Mar;41(3):205-18.
41. Long JR, Xu H, Zhao LJ, Liu PY, Shen H, Liu YJ, Xiong DH, Xiao P, Liu YZ, Dvornyk V, Li JL, Recker
RR, Deng HW. The oestrogen receptor alpha gene is linked and/or associated with age of menarche
in different ethnic groups. J Med Genet. 2005 Oct;42(10):796-800.
42. Shen H, Long JR, Xiong DH, Liu YJ, Liu YZ, Xiao P, Zhao LJ, Dvornyk V, Zhang YY, Rocha-Sanchez
S, Liu PY, Li JL, Deng HW. Mapping quantitative trait loci for cross-sectional geometry at the femoral
neck.J Bone Miner Res. 2005 Nov;20(11):1973-82.
43. Xiong DH, Xu FH, Liu PY, Shen H, Long JR, Elze L, Recker RR, Deng HW. Vitamin D receptor gene
polymorphisms are linked to and associated with adult height. J Med Genet. 2005 Mar;42(3):228-34.
44. Xu H, Long JR, Li MX, Deng HW. Interaction effects between estrogen receptor alpha and vitamin D
receptor genes on age at menarche in Chinese women. Acta Pharmacol Sin. 2005 Jul;26(7):860-4.
2006
45. Dvornyk V, Long JR, Liu PY, Shen H, Recker RR, Deng HW. Polymorphisms of the vitamin D
receptor gene predict the onset of surgical menopause in Caucasian females.Gynecol Endocrinol.
2006 Oct;22(10):552-6.
46. Guo Y, Shen H, Xiao P, Xiong DH, Yang TL, Guo YF, Long JR, Recker RR, Deng HW. Genomewide
linkage scan for quantitative trait loci underlying variation in age at menarche. J Clin Endocrinol
Metab. 2006 Mar;91(3):1009-14.
47. Liu YZ, Guo YF, Xiao P, Xiong DH, Zhao LJ, Shen H, Liu YJ, Dvornyk V, Long JR, Deng HY, Li JL,
Deng HW. Epistasis between loci on chromosomes 2 and 6 influences human height. J Clin
Endocrinol Metab. 2006 Oct;91(10):3821-5.
48. Liu YZ, Xiao P, Guo YF, Xiong DH, Zhao LJ, Shen H, Liu YJ, Dvornyk V, Long JR, Deng HY, Li JL,
Recker RR, Deng HW. Genetic linkage of human height is confirmed to 9q22 and Xq24. Hum Genet.
2006 Apr;119(3):295-304.
49. Long JR, Egan KM, Dunning L, Shu XO, Cai Q, Cai H, Dai Q, Holtzman J, Gao YT, Zheng W.
Population-based case-control study of AhR (aryl hydrocarbon receptor) and CYP1A2 polymorphisms
and breast cancer risk. Pharmacogenet Genomics. 2006 Apr;16(4):237-43. PubMed PMID:
16538170.
50. Long JR, Kataoka N, Shu XO, Wen W, Gao YT, Cai Q, Zheng W. Genetic polymorphisms of the
CYP19A1 gene and breast cancer survival. Cancer Epidemiol Biomarkers Prev. 2006
Nov;15(11):2115-22. PubMed PMID: 17119036.
51. Long JR, Shu XO, Cai Q, Cai H, Gao YT, Jin F, Zheng W. Polymorphisms of the CYP1B1 gene may
be associated with the onset of natural menopause in Chinese women. Maturitas. 2006 Oct
20;55(3):238-46. PubMed PMID: 16766147.
52. Shen H, Long JR, Xiong DH, Guo YF, Xiao P, Liu YZ, Zhao LJ, Liu YJ, Deng HY, Li JL, Recker RR,
Deng HW. A genomewide scan for quantitative trait loci underlying areal bone size variation in 451
Caucasian families. J Med Genet. 2006 Nov;43(11):873-80.
53. Xiao P, Shen H, Guo YF, Xiong DH, Liu YZ, Liu YJ, Zhao LJ, Long JR, Guo Y, Recker RR, Deng
HW. Genomic regions identified for BMD in a large sample including epistatic interactions and genderspecific effects.J Bone Miner Res. 2006 Oct;21(10):1536-44.
54. Xiong DH, Shen H, Xiao P, Guo YF, Long JR, Zhao LJ, Liu YZ, Deng HY, Li JL, Recker RR, Deng
HW. Genome-wide scan identified QTLs underlying femoral neck cross-sectional geometry that are
novel studied risk factors of osteoporosis. J Bone Miner Res. 2006 Mar;21(3):424-37.
55. Xu H, Long JR, Yang YJ, Deng FY, Deng HW. Genetic determination and correlation of body weight
and body mass index (BMI) and cross-sectional geometric parameters of the femoral neck.
Osteoporos Int. 2006;17(11):1602-7.
56. Zhang YY, Liu PY, Lu Y, Xiao P, Liu YJ, Long JR, Shen H, Zhao LJ, Elze L, Recker RR, Deng HW.
Tests of linkage and association of PTH/PTHrP receptor type 1 gene with bone mineral density and
height in Caucasians.J Bone Miner Metab. 2006;24(1):36-41.
2007
57. Dai Q, Xu WH, Long JR, Courtney R, Xiang YB, Cai Q, Cheng J, Zheng W, Shu XO. Interaction of
soy and 17beta-HSD1 gene polymorphisms in the risk of endometrial cancer.Pharmacogenet
Genomics. 2007 Feb;17(2):161-7. PubMed PMID: 17301695;PubMed Central PMCID: PMC2238679.
58. Decock J, Long JR, Laxton RC, Shu XO, Hodgkinson C, Hendrickx W, Pearce EG,Gao YT, Pereira
AC, Paridaens R, Zheng W, Ye S. Association of matrix metalloproteinase-8 gene variation with
breast cancer prognosis.Cancer Res. 2007 Nov 1;67(21):10214-21.
59. Long JR, Cai Q, Shu XO, Cai H, Gao YT, Zheng W. Genetic polymorphisms in estrogen-metabolizing
genes and breast cancer survival. Pharmacogenet Genomics. 2007 May;17(5):331-8.
60. Long JR, Shu XO, Cai Q, Wen W, Kataoka N, Gao YT, Zheng W. CYP19A1 genetic polymorphisms
may be associated with obesity-related phenotypes in Chinese women.Int J Obes (Lond). 2007
Mar;31(3):418-23. Epub 2006 Aug 8. PubMed PMID: 16894362.
61. Xu WH, Dai Q, Xiang YB, Long JR, Ruan ZX, Cheng JR, Zheng W, Shu XO. Interaction of soy food
and tea consumption with CYP19A1 genetic polymorphisms in the development of endometrial
cancer. Am J Epidemiol. 2007 Dec 15;166(12):1420-30. Epub 2007 Sep 7. PubMed PMID: 17827443;
PubMed Central PMCID: PMC2150998.
62. Yang YJ, Wang YB, Lei SF, Long JR, Shen H, Zhao LJ, Jiang DK, Xiao SM, Chen XD, Chen Y, Deng
HW. AHSG gene polymorphisms are associated with bone mineral density in Caucasian nuclear
families. Eur J Epidemiol. 2007;22(8):527-32. Epub 2007 Jun 8.
2008
63. Beeghly-Fadiel A, Long JR, Gao YT, Li C, Qu S, Cai Q, Zheng Y, Ruan ZX, Levy SE, Deming SL,
Snoddy JR, Shu XO, Lu W, Zheng W. Common MMP-7 polymorphisms and breast cancer
susceptibility: a multistage study of association and functionality. Cancer Res. 2008 Aug
1;68(15):6453-9. Epub 2008 Jul 22. PubMed PMID: 18648013; PubMed Central PMCID:
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64. Cai H, Shu XO, Egan KM, Cai Q, Long JR, Gao YT, Zheng W. Association of genetic polymorphisms
in CYP19A1 and blood levels of sex hormones among postmenopausal Chinese women.
Pharmacogenet Genomics. 2008 Aug;18(8):657-64. PubMed PMID: 18622258; PubMed Central
PMCID: PMC2613759.
65. Chan KY, Liu W, Long JR, Yip SP, Chan SY, Shu XO, Chua DT, Cheung AN, Ching JC, Cai H, Au
GK, Chan M, Foo W, Ngan HY, Gao YT, Ngan ES, Garcia-Barcelo MM, Zheng W, Khoo US.
Functional polymorphisms in the promoter of BRCA1 influences transcription and are associated with
decreased risk for breast cancer in Chinese women. J Med Genet. 2008 Sep 9. PubMed PMID:
18782836; PubMed Central PMCID: PMC2782922.
66. Qu S, Long J, Cai Q, Shu XO, Cai H, Gao YT, Zheng W. Genetic polymorphisms of metastasis
suppressor gene NME1 and breast cancer survival. Clin Cancer Res. 2008 Aug 1;14(15):4787-93.
PubMed PMID: 18676749; PubMed Central PMCID: PMC2713865.
67. Deming SL, Ren Z, Cai Q, Shu XO, Wen W, Long JR, Gao YT, Zheng W. IGF-I and IGF-II genetic
variation and breast cancer risk in Chinese women: results from the Shanghai Breast Cancer Study.
Cancer Epidemiol Biomarkers Prev. 2008 Jan;17(1):255-7. PubMed PMID: 18199734; PubMed
Central PMCID: PMC2646902.
68. Li C, Li M, Long JR, Cai Q, Zheng W. Evaluating cost efficiency of SNP chips in genome-wide
association studies. Genet Epidemiol. 2008 Jul;32(5):387-95 PubMed PMID: 18271056; PubMed
Central PMCID: PMC2650398.
2009
69. Beeghly-Fadiel A, Lu W, Gao YT, Long J, Deming SL, Cai Q, Zheng Y, Shu XO, Zheng W. Ecadherin polymorphisms and breast cancer susceptibility: a report from the Shanghai Breast Cancer
Study. Breast Cancer Res Treat. 2010 Jun;121(2):445-52. Epub 2009 Oct 16. PubMed PMID:
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70. Beeghly-Fadiel A, Lu W, Long JR, Shu XO, Zheng Y, Cai Q, Gao YT, Zheng W. Matrix
metalloproteinase-2 polymorphisms and breast cancer susceptibility. Cancer Epidemiol Biomarkers
Prev. 2009 Jun;18(6):1770-6. PMCID: PMC2747044
71. Beeghly-Fadiel A, Shu XO, Long JR, Li C, Cai Q, Cai H, Gao YT, Zheng W. Genetic polymorphisms
in the MMP-7 gene and breast cancer survival. Int J Cancer. 2009 Jan 1;124(1):208-14. PMCID:
PMC2597698
72. Beeghly-Fadiel A, Xiang YB, Deming SL, Long JR, Xu WH, Cai Q, Zheng W, Shu XO. No
association between matrix metalloproteinase (MMP)-1, MMP-3, and MMP-7 SNPs and endometrial
cancer risk. Cancer Epidemiol Biomarkers Prev. 2009 Jun;18(6):1925-8. Epub 2009 May 12. PubMed
PMID: 1943586 PubMed Central PMCID: PMC2770800
73. Hong YS, Deming SL, Gao YT, Long JR, Shu XO, Cai Q, Lu W, Zheng W. A two-stage case-control
study of EGFR polymorphisms and breast cancer risk. Cancer Epidemiol Biomarkers Prev. 2009
Feb;18(2):680-3. Epub 2009 Feb 3. PubMed PMID: 19190167;PubMed Central PMCID:
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74. Peterson NB, Beeghly-Fadiel A, Gao YT, Long JR, Cai Q, Shu XO, and Zheng W. Polymorphisms in
tissue inhibitors of metalloproteinases-2 and -3 and breast cancer susceptibility and survival. Int J
Cancer. 2009 Aug 15;125(4):844-50. PMCID: PMC2745995
75. Xu HL, Xu WH, Cai Q, Feng M, Long JR, Zheng W, Xiang YB, Shu XO. Polymorphisms and
haplotypes in the caspase-3, caspase-7, and caspase-8 genes and risk for endometrial cancer: a
population-based, case-control study in a Chinese population. Cancer Epidemiol Biomarkers Prev.
2009 Jul;18(7):2114-22. PMCID: PMC2764360
76. Xu WH, Long JR, Zheng W, Ruan ZX, Cai Q, Cheng JR, Xiang YB, Shu XO. Association of the
progesterone receptor gene with endometrial cancer risk in a Chinese population. Cancer. 2009 Jun
15;115(12):2693-700. PMCID: PMC2746752
77. Xu WH, Long JR, Zheng W, Ruan ZX, Cai Q, Cheng JR, Zhao GM, Xiang YB, Shu XO. Association
of Thymidylate Synthase Gene with Endometrial Cancer Risk in a Chinese Population. Cancer
Epidemiol Biomarkers Prev. 2009 Feb;18(2):579-84. PMCID: PMC2722075
78. You M, Wang D, Liu P, Wen W, Yang P, Vikis H, James M, Lu Y, Wang Y, Wang M, Chen Q, Jia D,
Liu Y, Wei W, Yang P, Sun Z, Pinneys S, Zheng W, Shu XO, Long JR, Gao YT, Xiang YB, Chow
WH, Rothman N, Petersen GM, Andrade M, Wu Y, Cunningham JM, Wiest JS, Fain PR, Schwartz
AG, Gazdar A, Gaba C, Rothschild H, Mandal D, Coon T, Lee J, Kupert E, Seminara D, Minna J,
Bailey-Wilson JE, Amos CI, Anderson MW. Fine mapping of chromosome 6q23-25 region in familial
lung cancer families reveals RGS17 as a likely candidate gene. Clin Cancer Res. 2009 Apr
15;15(8):2666-74. PMCID: PMC2746091
79. Zheng W, Long JR, Gao YT, Li C, Zheng Y, Xiang YB, Wen W, Levy S, Haines JL, Gu K, Cai Q, Lu
W, Shu XO, Genome-wide association study identifies a novel breast cancer susceptibility locus at
6q25.1. Nature Genetics, 2009 41(3):324-8. Epub 2009 Feb 15. Pubmed PMID: 19219042; Pubmed
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80. Zheng W, Cai Q, Signorello LB, Long JR, Hargreaves MK, Deming SL, Li G, Li C, Cui Y, Blot WJ.
Evaluation of 11 breast cancer susceptibility loci in African-American women. Cancer Epidemiol
Biomarkers Prev. 2009 Oct;18(10):2761-4.Epub 2009 Sep 29. Pubmed PMID: 19789366; PMCID:
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2010
81. Long JR, Cai Q, Shu XO, Qu S, Li C, Zheng Y, et al. Identification of a functional genetic variant at
16q12.1 for breast cancer risk: Results from the Asia Breast Cancer Consortium. PLoS Genet. 2010
Jun 24;6(6):e1001002. PubMed PMID: 20585626; PubMed Central PMCID: PMC2891809.
82. Long JR, Shu XO, Cai Q, Gao YT, Zheng Y, Li G, Li C, Gu K, Wen W, Xiang YB, Lu W, Zheng W.
Evaluation of breast cancer susceptibility Loci in Chinese women. Cancer Epidemiol Biomarkers Prev.
2010 Sep;19(9):2357-65. Epub 2010 Aug 10.PubMed PMID: 20699374; PubMed Central PMCID:
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83. Shi J, Long J, Gao YT, Lu W, Cai Q, Wen W, Zheng Y, Yu K, Xiang YB, Hu FB, Zheng W, Shu XO.
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Evaluation of genetic susceptibility loci for obesity in Chinese women. Am J Epidemiol. 2010 Aug
1;172(3):244-54. PMCID: PMC2917056
Shu XO, Long J, Cai Q, Qi L, Xiang YB, Cho YS, Tai ES, Li X, Lin X, Chow WH, Go MJ, Seielstad M,
Bao W, Li H, Cornelis MC, Yu K, Wen W, Shi J, Han BG, Sim XL, Liu L, Qi Q, Kim HL, Ng DP, Lee
JY, Kim YJ, Li C, Gao YT, Zheng W, Hu FB. Identification of new genetic risk variants for type 2
diabetes. PLoS Genet. 2010 Sep 16;6(9). pii: e1001127. PubMed PMID: 20862305; PubMed Central
PMCID:PMC2940731.
Signorello LB, Williams SM, Zheng W, Smith JR, Long J, Cai Q, Hargreaves MK, Hollis BW, Blot WJ.
Blood vitamin d levels in relation to genetic estimation of African ancestry. Cancer Epidemiol
Biomarkers Prev. 2010 Sep;19(9):2325-31. Epub 2010 Jul 20. PubMed PMID: 20647395; PubMed
Central PMCID: PMC2938736.
Ye C, Beeghly-Fadiel A, Lu W, Long J, Shu XO, Gao YT, Zheng W, Cai Q. Two-stage case-control
study of DNMT-1 and DNMT-3B gene variants and breast cancer risk. Breast Cancer Res Treat. 2010
Jun;121(3):765-9. Epub 2009 Oct 2. PubMed PMID: 19798569.
Zheng W, Wen W, Gao YT, Shyr Y, Zheng Y, Long J, Li G, Li C, Gu K, Cai Q, Shu XO, Lu W.
Genetic and clinical predictors for breast cancer risk assessment and stratification among Chinese
women. J Natl Cancer Inst. 2010 Jul 7;102(13):972-81. Epub 2010 May 18. PubMed PMID:
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2011
88. Beeghly-Fadiel A, Lu W, Shu XO, Long J, Cai Q, Xiang Y, Gao YT, Zheng W. MMP9 polymorphisms
and breast cancer risk: a report from the Shanghai Breast Cancer Genetics Study. Breast Cancer
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89. Beeghly-Fadiel A, Shu XO, Lu W, Long J, Cai Q, Xiang YB, Zheng Y, Zhao Z, Gu K, Gao YT, Zheng
W. Genetic variation in VEGF family genes and breast cancer risk: a report from the Shanghai Breast
Cancer Genetics Study. Cancer Epidemiol Biomarkers Prev. 2011 Jan;20(1):33-41. Epub 2010 Nov
30. PubMed PMID: 21119072.
90. Cai H, Xiang YB, Qu S, Long J, Cai Q, Gao J, Zheng W, Shu XO. Association of genetic
polymorphisms in cell-cycle control genes and susceptibility to endometrial cancer among Chinese
women. Am J Epidemiol. 2011 Jun 1;173(11):1263-71. Epub 2011 Mar 31. PubMed PMID:
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91. Cai Q, Long J, Lu W, Qu S, Wen W, Kang D, Lee JY, Chen K, Shen H, Shen CY, Sung H, Matsuo
K, Haiman CA, Khoo US, Ren Z, Iwasaki M, Gu K, Xiang YB, Choi JY, Park SK, Zhang L, Hu Z, Wu
PE, Noh DY, Tajima K, Henderson BE, Chan KY, Su F, Kasuga Y, Wang W, Cheng JR, Yoo KY, Lee
JY, Zheng H, Liu Y, Shieh YL, Kim SW, Lee JW, Iwata H, Le Marchand L, Chan SY, Xie X, Tsugane
S, Lee MH, Wang S, Li G, Levy S, Huang B, Shi J, Delahanty R, Zheng Y, Li C, Gao YT, Shu XO,
Zheng W. Genome-wide association study identifies breast cancer risk variant at 10q21.2: results
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92. Cai Q, Wen W, Qu S, Li G, Egan KM, Chen K, Deming SL, Shen H, Shen CY, Gammon MD, Blot
WJ, Matsuo K, Haiman CA, Khoo US, Iwasaki M, Santella RM, Zhang L, Fair AM, Hu Z, Wu PE,
Signorello LB, Titus-Ernstoff L, Tajima K, Henderson BE, Chan KY, Kasuga Y, Newcomb PA, Zheng
H, Cui Y, Wang F, Shieh YL, Iwata H, Le Marchand L, Chan SY, Shrubsole MJ, Trentham-Dietz A,
Tsugane S, Garcia-Closas M, Long J, Li C, Shi J, Huang B, Xiang YB, Gao YT, Lu W, Shu XO,
Zheng W. Replication and functional genomic analyses of the breast cancer susceptibility locus at
6q25.1 generalize its importance in women of Chinese, Japanese, and European ancestry.Cancer
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93. Chen X, Xiang YB, Long JR, Cai H, Cai Q, Cheng J, Wen W, Gao YT, Zheng W, Shu XO. Genetic
polymorphisms in obesity-related genes and endometrial cancer risk. Cancer. 2011 Oct 28. doi:
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Gao Y, Hu FB, Kim HL, Kim S, Kim YJ, Lee JJ, Lee NR, Li Y, Liu JJ, Lu W, Nakamura J, Nakashima
E, Ng DP, Tay WT, Tsai FJ, Wong TY, Yokota M, Zheng W, Zhang R, Wang C, So WY, Ohnaka K,
Ikegami H, Hara K, Cho YM, Cho NH, Chang TJ, Bao Y, Hedman AK, Morris AP, McCarthy MI;
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95. Cohen SS, Gammon MD, North KE, Millikan RC, Lange EM, Williams SM, Zheng W, Cai Q, Long J,
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96. Delahanty RJ, Beeghly-Fadiel A, Xiang YB, Long J, Cai Q, Wen W, Xu WH, Cai H, He J, Gao YT,
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report from the Shanghai Endometrial Cancer Genetics Study. Am J Epidemiol. 2011 Nov
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97. Dorjgochoo T, Delahanty R, Lu W, Long J, Cai Q, Zheng Y, Gu K, Gao YT, Zheng W, Shu XO.
Common genetic variants in the vitamin D pathway including genome-wide associated variants are
not associated with breast cancer risk among Chinese women. Cancer Epidemiol Biomarkers Prev.
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98. Dorjgochoo T, Shi J, Gao YT, Long J, Delahanty R, Xiang YB, Cai Q, Shu XO. Genetic variants in
vitamin D metabolism-related genes and body mass index: analysis of genome-wide scan data of
approximately 7000 Chinese women. Int J Obes (Lond). 2012 Sep;36(9):1252-5. doi:
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99. Jia P, Zheng S, Long J, Zheng W, Zhao Z. dmGWAS: dense module searching for genome-wide
association studies in protein-protein interaction networks. Bioinformatics. 2011 Jan 1;27(1):95-102.
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100. Li G, Xiang YB, Courtney R, Cheng JR, Huang B, Long JR, Cai H, Zheng W, Shu,XO, Cai Q.
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among Chinese women. Chin J Cancer. 2011 Feb;30(2):138-43. PubMed PMID: 21272446.
101. Signorello LB, Shi J, Cai Q, Zheng W, Williams SM, Long J, Cohen SS, Li G, Hollis BW, Smith JR,
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102. Spurdle AB, Thompson DJ, Ahmed S, Ferguson K, Healey CS, O'Mara T, Walker LC, Montgomery
SB, Dermitzakis ET; Australian National Endometrial Cancer Study Group, Fahey P, Montgomery
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Vergote I, Amant F, Salvesen HB, Trovik J, Njolstad TS, Helland H, Scott RJ, Ashton K, Proietto T,
Otton G; National Study of Endometrial Cancer Genetics Group, Tomlinson I, Gorman M, Howarth K,
Hodgson S, Garcia-Closas M, Wentzensen N, Yang H, Chanock S, Hall P, Czene K, Liu J, Li J, Shu
XO, Zheng W, Long J, Xiang YB, Shah M, Morrison J, Michailidou K, Pharoah PD, Dunning AM,
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103. Villegas R, Williams S, Gao Y, Cai Q, Li H, Elasy T, Cai H, Edwards T, Xiang YB, Zheng W, Long J,
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diabetes in middle-aged Chinese women. Ann Hum Genet. 2011 Sep;75(5):621-9. doi:
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104. Xu WH, Shu XO, Long J, Lu W, Cai Q, Zheng Y, Xiang YB, Dai Q, Zhao GM, Gu K,Bao PP, Gao
YT, Zheng W. Relation of FGFR2 genetic polymorphisms to the association between oral
contraceptive use and the risk of breast cancer in Chinese women. Am J Epidemiol. 2011 Apr
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107. Beeghly-Fadiel A, Zheng W, Lu W, Long J, Zheng Y, Cai H, Gu K, Chen Z, Cai Q, Gao YT, Shu XO.
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110. Guo Y, Cai Q, Samuels DC, Ye F, Long J, Li CI, Winther JF, Tawn EJ, Stovall M, Lähteenmäki P,
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111. Guo Y, Long J, He J, Li CI, Cai Q, Shu XO, Zheng W, Li C. Exome sequencing generates high
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112. Long J, Cai Q, Sung H, Shi J, Zhang B, Choi JY, Wen W, Delahanty RJ, Lu W, Gao YT, Shen H,
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115. Shu XO, Long J, Lu W, Li C, Chen WY, Delahanty R, Cheng J, Cai H, Zheng Y, Shi J, Gu K, Wang
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Gu D, Zhu D, Haiman CA, Mo Z, Gao YT, Saw SM, Go MJ, Takeuchi F, Chang LC, Kokubo Y, Liang
J, Hao M, Le Marchand L, Zhang Y, Hu Y, Wong TY, Long J, Han BG, Kubo M, Yamamoto K, Su
MH, Miki T, Henderson BE, Song H, Tan A, He J, Ng DP, Cai Q, Tsunoda T, Tsai FJ, Iwai N, Chen
GK, Shi J, Xu J, Sim X, Xiang YB, Maeda S, Ong RT, Li C, Nakamura Y, Aung T, Kamatani N, Liu
JJ, Lu W, Yokota M, Seielstad M, Fann CS; The Genetic Investigation of Anthropometric Traits
(GIANT) Consortium, Wu JY, Lee JY, Hu FB, Tanaka T, Tai ES, Shu XO. Meta-analysis identifies
common variants associated with body mass index in east Asians. Nat Genet. 2012 Feb 19; 44(3)
:307-311. Doi: 10.1038/ng.1087. Pubmed PMIDL 22344219; PubMed Central PMCID: PMC3288728.
117. Sung H, Zhang B, Choi JY, Long J, Park SK, Yoo KY, Noh DY, Ahn SH, Zheng W, Kang D.
Common Genetic Variants in the MicroRNA Biogenesis Pathway Are Not Associated with Breast
Cancer Risk in Asian Women. Cancer Epidemiol Biomarkers Prev. 2012 Aug;21(8):1385-7. Epub
2012 Jun 19. PubMed PMID: 22714736.
118. Xu J, Mo Z, Ye D, Wang M, Liu F, Jin G, Xu C, Wang X, Shao Q, Chen Z, Tao Z, Qi J, Zhou F, Wang
Z, Fu Y, He D, Wei Q, Guo J, Wu D, Gao X, Yuan J, Wang G, Xu Y, Wang G, Yao H, Dong P, Jiao
Y, Shen M, Yang J, Ou-Yang J, Jiang H, Zhu Y, Ren S, Zhang Z, Yin C, Gao X, Dai B, Hu Z, Yang Y,
Wu Q, Chen H, Peng P, Zheng Y, Zheng X, Xiang Y, Long J, Gong J, Na R, Lin X, Yu H, Wang Z,
Tao S, Feng J, Sun J, Liu W, Hsing A, Rao J, Ding Q, Wiklund F, Gronberg H, Shu XO, Zheng W,
Shen H, Jin L, Shi R, Lu D, Zhang X, Sun J, Zheng SL, Sun Y. Genome-wide association study in
Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4. Nat Genet. 2012
Nov;44(11):1231-5. doi: 10.1038/ng.2424. Epub 2012 Sep 30. PubMed PMID: 23023329.
119. Andersen SW, Trentham-Dietz A, Figueroa JD, Titus LJ, Cai Q, Long J, Hampton JM, Egan KM,
Newcomb PA. Breast cancer susceptibility associated with rs1219648 (fibroblast growth factor
receptor 2) and postmenopausal hormone therapy use in a population-based United States study.
Menopause. 2012 Oct 15.
120. Long J, Edwards T, Signorello LB, Cai Q, Zheng W, Shu XO, Blot WJ. Evaluation of genome-wide
association study-identified type 2 diabetes loci in African Americans. Am J Epidemiol. 2012 Dec
1;176(11):995-1001. doi: 10.1093/aje/kws176. Epub 2012 Nov 9. PubMed PMID: 23144361.
121. Villegas R, Delahanty R, Gao YT, Long J, Williams SM, Xiang YB, Cai H, Li HL, Hu F, Cai Q, Zheng
W, Shu XO. Joint Effect of Genetic and Lifestyle Risk Factors on Type 2 Diabetes Risk among
Chinese Men and Women. PLoS One. 2012;7(11):e49464. doi: 10.1371/journal.pone.0049464. Epub
2012 Nov 21. PubMed PMID: 23185337.
122. Jia WH, Zhang B, Matsuo K, Shin A, Xiang YB, Jee SH, Kim DH, Ren Z, Cai Q, Long J, Shi J, Wen
W, Yang G, Delahanty RJ; Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO);
Colon Cancer Family Registry (CCFR), Ji BT, Pan ZZ, Matsuda F, Gao YT, Oh JH, Ahn YO, Park
EJ, Li HL, Park JW, Jo J, Jeong JY, Hosono S, Casey G, Peters U, Shu XO, Zeng YX, Zheng W.
Genome-wide association analyses in east Asians identify new susceptibility loci for colorectal
cancer. Nat Genet. 2012 Dec 23;45(2):191-196. doi: 10.1038/ng.2505. Epub 2012 Dec 23. PubMed
PMID: 23263487.
123. Guo Y, Li J, Li CI, Long J, Samuels DC, Shyr Y. The effect of strand bias in Illumina short-read
sequencing data. BMC Genomics. 2012 Nov 24;13:666. doi:10.1186/1471-2164-13-666. PubMed
PMID: 23176052; PubMed Central PMCID: PMC3532123.
124. Liu Q, Guo Y, Li J, Long J, Zhang B, Shyr Y. Steps to ensure accuracy in genotype and SNP calling
from Illumina sequencing data. BMC Genomics. 2012;13 Suppl 8:S8. doi: 10.1186/1471-2164-13-S8S8. Epub 2012 Dec 17. PubMed PMID:23281772; PubMed Central PMCID: PMC3535703.
2013
125. Jiang DK, Sun J, Cao G, Liu Y, Lin D, Gao YZ, Ren WH, Long XD, Zhang H, Ma XP, Wang Z, Jiang
W, Chen TY, Gao Y, Sun LD, Long JR, Huang HX, Wang D, Yu H, Zhang P, Tang LS, Peng B, Cai
H, Liu TT, Zhou P, Liu F, Lin X, Tao S, Wan B, Sai-Yin HX, Qin LX, Yin J, Liu L, Wu C, Pei Y, Zhou
YF, Zhai Y, Lu PX, Tan A, Zuo XB, Fan J, Chang J, Gu X, Wang NJ, Li Y, Liu YK, Zhai K, Zhang H,
Hu Z, Liu J, Yi Q, Xiang Y, Shi R, Ding Q, Zheng W, Shu XO, Mo Z, Shugart YY, Zhang XJ, Zhou G,
Shen H, Zheng SL, Xu J, Yu L. Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis
B virus-related hepatocellular carcinoma. Nat Genet. 2013 Jan;45(1):72-5. doi: 10.1038/ng.2483.
Epub 2012 Dec 16. PubMed PMID: 23242368.
126. Chen F, Chen GK, Stram DO, Millikan RC, Ambrosone CB, John EM, Bernstein L, Zheng W, Palmer
JR, Hu JJ, Rebbeck TR, Ziegler RG, Nyante S, Bandera EV, Ingles SA, Press MF, Ruiz-Narvaez EA,
Deming SL, Rodriguez-Gil JL, Demichele A, Chanock SJ, Blot W, Signorello L, Cai Q, Li G, Long J,
Huo D, Zheng Y, Cox NJ, Olopade OI, Ogundiran TO, Adebamowo C, Nathanson KL, Domchek SM,
Simon MS, Hennis A, Nemesure B, Wu SY, Leske MC, Ambs S, Hutter CM, Young A, Kooperberg C,
Peters U, Rhie SK, Wan P, Sheng X, Pooler LC, Van Den Berg DJ, Le Marchand L, Kolonel LN,
Henderson BE, Haiman CA. A genome-wide association study of breast cancer in women of African
ancestry. Hum Genet. 2013 Jan;132(1):39-48. doi:10.1007/s00439-012-1214-y. Epub 2012 Aug 25.
PubMed PMID: 22923054.
127. Ma X, Cai Q, Delahanty R, Shu XO, Zhang B, Lu W, Gao YT, Zheng W, Long J, Beeghly-Fadiel A.
No Association between Ovarian Cancer Susceptibility Variants and Breast Cancer Risk among
Chinese Women. Cancer Epidemiol Biomarkers Prev. 2013 Jan 4.
128. Li H, Beeghly-Fadiel A, Wen W, Lu W, Gao YT, Xiang YB, Cai Q, Long J, Shi J, Chen K, Zheng Y,
Shu XO, Zheng W. Gene-environment interactions for breast cancer risk among Chinese women: a
report from the Shanghai Breast Cancer Genetics Study. Am J Epidemiol. 2013 Jan 15;177(2):16170. Epub 2012 Dec 6. PubMed PMID: 23221726.
129. Long J, Delahanty RJ, Li G, Gao YT, Lu W, Cai Q, Xiang YB, Li C, Ji BT, Zheng Y, Ali S, Shu XO,
Zheng W. A Common Deletion in the APOBEC3 Genes and Breast Cancer Risk. J Natl Cancer Inst.
2013 Feb 14. PubMed PMID: 23411593.
130. Delahanty RJ, Xiang YB, Spurdle A, Beeghly-Fadiel A, Long J, Thompson D, Tomlinson I, Yu H,
Lambrechts D, Dörk T, Goodman MT, Zheng Y, Salvesen HB, Bao PP, Amant F, Beckmann MW,
Coenegrachts L, Coosemans A, Dubrowinskaja N, Dunning A, Runnebaum IB, Easton D, Ekici AB,
Fasching PA, Halle MK, Hein A, Howarth K, Gorman M, Kaydarova D, Krakstad C, Lose F, Lu L,
Lurie G, O'Mara T, Matsuno RK, Pharoah P, Risch H, Corssen M, Trovik J, Turmanov N, Wen W, Lu
W, Cai Q, Zheng W, Shu XO. Polymorphisms in inflammation pathway genes and endometrial
cancer risk. Cancer Epidemiol Biomarkers Prev. 2013 Feb;22(2):216-23. doi: 10.1158/10559965.EPI-12-0903. Epub 2012 Dec 5. PubMed PMID: 23221126.
131. Long J, Zheng B, Signorello LB, Cai Q, Deming-Halverson S, Shrubsole MJ, Sanderson M, Shu XO,
Blot WJ, Zheng W. Evaluating Genome-Wide Association Study-Identified Breast Cancer Risk
Variants in African-American Women. Plos One. In Press
132. Shen C, Delahanty RJ, Gao YT, Lu W, Xaing YB, Zheng Y, Cai Q, Zheng W, Shu XO, Long J.
Evaluating GWAS-identified SNPs for Age at Natural Menopause among Chinese Women. Plos
One. 2013;8(3):e58766. doi: 10.1371/journal.pone.0058766.Epub 2013 Mar 25. PubMed PMID:
23536822; PubMed Central PMCID: PMC3607593.
133. Garcia-Closas M, Couch FJ, Lindstrom S, Michailidou K, Schmidt M, Long J, Pharoah P, Vachon C,
Easton D, Haiman CA, Kraft P. Genome-wide association studies identify four ER-negative specific
breast cancer risk loci. Nat Genet. 2013 Apr;45(4):392-8. doi: 10.1038/ng.2561.PubMed PMID:
23535733.
134. Michailidou K, Hall P, Gonzalez-Neira A, Ghoussaini M, Dennis J, Milne RL, Schmidt MK, ChangClaude J, Bojesen SE, Bolla MK, Wang Q, Dicks E, Lee A, Turnbull C, Rahman N, The Breast and
Ovarian Study Collaboration, Fletcher O, Peto J, Gibson L, dos Santos Silva I, Nevanlinna H,
Muranen TA, Aittomäki K, Blomqvist C, Czene K, Irwanto A, Liu J, Waisfisz Q, Meijers-Heijboer H,
Adank M, HEBON, van der Luijt RB, Hein R, Dahmen N, Beckman L, Meindl A, Schmutzler RK,
Müller-Myhsok B, Lichtner P, Hopper JL, Southey MC, Makalic E, Schmidt DF, Uitterlinden AG,
Hofman A, Hunter DJ, Chanock SJ, Vincent D, Bacot F, Tessier DC, Canisius S, Wessels LFA,
Haiman CA, Shah M, Luben R, Brown J, Luccarini C, Schoof N, Humphreys K, Li J,
Nordestgaard BG, Nielsen SF, Flyger H, Couch FJ, Wang X, Vachon C, Stevens KN, Lambrechts
D, Moisse M, Paridaens R, Christiaens M-R, Rudolph A, Nickels S, Flesch-Janys D, Johnson N,
Aitken Z, Aaltonen K, Heikkinen T, Broeks A, Van ’t Veer LJ, van der Schoot CE, Guénel P,
Truong T, Laurent-Puig P, Menegaux F, Marme F, Schneeweiss A, Sohn C, Burwinkel B,
Zamora MP, Perez JIA, Pita G, Alonso MR, Cox A, Brock IW, Cross SS, Reed MWR, Sawyer EJ,
Tomlinson I, Kerin MJ, Miller N, Henderson BE, Schumacher F, Le Marchand L, Andrulis IL,
Knight JA, Glendon G, Mulligan AM, kConFab Investigators, Australian Ovarian Cancer Study
Group, Lindblom A, Margolin S, Hooning MJ, Hollestelle A, van den Ouweland AMW, Jager A, Bui
QM, Stone J, Dite GS, Apicella C, Tsimiklis H, Giles GG, Severi G, Baglietto L, Fasching PA,
Haeberle L, Ekici AB, Beckmann MW, Brenner H, Müller H, Arndt V, Stegmaier C, Swerdlow A,
Ashworth A, Orr N, Jones M, Figueroa J, Lissowska J, Brinton L, Goldberg MS, Labrèche F,
Dumont M, Winqvist R, Pylkäs K, Jukkola-Vuorinen A, Grip M, Brauch H, Hamann U, Brüning T,
The GENICA Network, Radice P, Peterlongo P, Manoukian S, Bonanni B, Devilee P, RAEM
Tollenaar, Seynaeve C, van Asperen CJ, Jakubowska A, Lubinski J, Jaworska K, Durda K,
Mannermaa A, Kataja V, Kosma V-M, Hartikainen JM, Bogdanova NV, Antonenkova NN, Dörk T,
Kristensen VN, Anton-Culver H, Slager S, Toland AE, Edge S, Fostira F,Kang D, Yoo K-Y, Noh DY, Matsuo K, Ito H, Iwata H, Sueta A, Wu AH, Tseng C-C, Van Den Berg D, Stram DO, Shu X-O,
Lu W, Gao Y-T, Cai H, Teo SH,Yip CH, Phuah SY, Cornes BK, Hartman M, Miao H, Lim WY, Sng
J-H, Muir K, Lophatananon A, Stewart-Brown S, Siriwanarangsan P, Shen C-Y, Hsiung C-N, Wu PE, Ding S-L, Sangrajrang S, Gaborieau V, Brennan P,McKay J, Blot WJ, Signorello LB, Cai Q,
Zheng W, Deming-Halverson S, Shrubsole M, Long J, Simard J, Garcia-Closas M, Pharoah PDP,
Chenevix-Trench G, Dunning AM, Benitez J, Easton DF. Large-scale genotyping identifies 41 new
loci associated with breast cancer risk. Nat Genet. 2013 Apr;45(4):353-61. doi: 10.1038/ng.2563.
PubMed PMID:23535729.
135. Zheng W, Zhang B, Cai Q, Sung H, Kyriaki Michailidou K, Shi J, Choi J-Y, Long J, Dennis J,
Humphreys MK,Wang Q, Lu W, Gao Y-T, Li C, Cai H, Park SK, Yoo K-Y, Noh D-Y,Han W, Dunning
AM, Benitez J,Vincent D, Bacot F, Tessier D, Kim S-W, Lee MH, Lee JW, Lee J-Y, Xiang Y-B, Zheng
Y, Wang W, Ji B-T, Matsuo K,Ito H, Iwata H, Tanaka H, Wu AH, Tseng C-C, Van Den Berg D, Stram
DO, Teo SH, Yip CH, Kang IN, Wong TY,Shen C-Y, Yu J-C, Huang C-S,Hou M-F, Hartman M, Miao
H, Lee SC, Putti TC, Muir K,Lophatananon A, Stewart-Brown S, Siriwanarangsan P, Sangrajrang
S, Shen H, Chen K, Wu P-E, Ren Z,Haiman CA, Sueta A, Kim MK, Khoo US, Iwasaki M, Pharoah
PDP, Wen W, Hall P, Shu X-O, Easton DF, Kang D. Common genetic determinants of breast-cancer
risk in East Asian women: a collaborative meta-analysis of 23,637 breast cancer cases and 25,280
controls. Hum Mol Genet. 2013 Mar 27. [Epub ahead of print] PubMed PMID: 23535825.
136. Bojesen SE, Pooley KA, Johnatty SE, Beesley J, Michailidou K, Tyrer JP, Edwards SL, Pickett
HA, Shen HC, Smart CE, Hillman KM,Mai PL, Lawrenson K, Stutz MD, Lu Y, Karevan R,Woods N,
Johnston RL, French JD, Chen X, Weischer M, Nielsen SF, Maranian MJ, Ghoussaini M, Ahmed
S, Baynes C, Bolla MK, Wang Q, Dennis J, McGuffog L,Barrowdale D, Lee A,Healey S, Lush M,
Tessier DC, Vincent D, Bacot F, Study Group members, Vergote I, Lambrechts S, Despierre E,
Risch HA, González-Neira A, Rossing MA, Pita G, Doherty JA, Álvarez N, Larson MC, Fridley BL,
Schoof N, Chang-Claude J, Cicek MS, Peto J, Kalli KR,Broeks A, Armasu SM, Schmidt MK, Braaf
LM,Winterhoff B, Nevanlinna H, Konecny GE, Lambrechts D, Rogmann L, Guénel P, Teoman A,
Milne RL, Garcia JJ, Cox A, Shridhar V, Burwinkel B, Marme F, Hein R, Sawyer EJ, Haiman CA,
Wang-Gohrke S, Andrulis IL, Moysich KB, Hopper JL, Odunsi K, Lindblom A, Giles GG, Brenner H,
Simard J, Lurie G, Fasching PA, Carney ME, Radice P, Wilkens LR, Swerdlow A, Goodman
MT,Brauch H, García-Closas M, Hillemanns P,Winqvist R, Dürst M, Devilee P, Runnebaum I,
Jakubowska A, Lubinski J, Mannermaa A, Butzow R, Bogdanova NV, Dörk T, Pelttari LM, Zheng
W, Leminen A, Anton-Culver H, Bunker CH, Kristensen V, Ness RB, Muir K, Edwards R, Meindl A,
Heitz F, Matsuo K, du Bois A, Wu AH, Harter P, Teo S-H, Schwaab I, Shu X-O, Blot W, Hosono S,
Kang D, Nakanishi T, Hartman M, Yatabe Y, Hamann U, Karlan BY, Sangrajrang S, Kjaer
SK,Gaborieau V, Jensen A, Eccles D, Høgdall E, Shen C-Y,Brown J, Woo YL, Shah M, Mat
Adenan NA, Luben R, Omar SZ, Czene K, Vierkant RA, Nordestgaard BG, Flyger H, Vachon C,
Olson JE, Wang X, Levine DA, Rudolph A, Weber RP, Flesch-Janys D, Iversen E, Nickels S,
Schildkraut JM, Dos Santos Silva I, Cramer DW, Gibson L, Terry KL, Fletcher O, Vitonis AF, van
der Schoot CE, Poole EM, Hogervorst, Tworoger SS,Liu J, Bandera EV, Li J, Olson SH, Humphreys
K, Orlow I, Blomqvist C, Rodriguez-Rodriguez L, Aittomäki K, Salvesen HB, Muranen TA, Wik E,
Brouwers B, Krakstad C,Wauters E, Halle MK, Wildiers H, Kiemeney LA, Mulot C, Aben KK,
Laurent-Puig P, van Altena AM, Truong T, Massuger LFAG, Benitez J, Pejovic T, Perez JIA, Hoatlin
M, Zamora MP, Cook LS, Balasubramanian SP, Kelemen LE, Schneeweiss A, Le ND, BrooksWilson CSA, Tomlinson I, Kerin MJ, Miller N, Henderson CCBE, Menkiszak J, Schumacher F,
Wentzensen N, Le Marchand L, Yang HP, Mulligan AM , Glendon G, Engelholm SA, Knight JA,
Høgdall CK, Apicella C, Gore M, Tsimiklis H, Song H, Southey MC, Jager A, van den Ouweland
AMW, Brown R, Martens JWM, Flanagan JM, Kriege M, Paul J, Margolin S, Siddiqui N, Severi G,
Whittemore AS, Baglietto L, McGuire V, Stegmaier C, Sieh W, Müller H, Arndt V, Labrèche F, Gao
Y-T, Goldberg MS,Yang G, Dumont M, McLaughlin JR, Hartmann A, Ekici AB, Beckmann MW,
Phelan CM, Lux MP, Permuth-Wey J, Peissel B, Sellers TA, Ficarazzi F, Barile M, Ziogas
A,Ashworth A, Gentry-Maharaj A, Jones M, Ramus SJ, Orr N, Menon U, Pearce CL, Brüning T, Pike
MC, Ko Y-D, Lissowska J, Figueroa J, Kupryjanczyk J, Chanock, Dansonka-Mieszkowska A,
Jukkola-Vuorinen A, Rzepecka IK, Pylkäs K, Bidzinski M, Kauppila S, Hollestelle A, Seynaeve C,
Tollenaar RAEM, Durda K, Jaworska K, Hartikainen JM, Kosma V-M, Kataja V, Antonenkova, Long
J, Shrubsole MJ, Deming-Halverson S, Lophatananon A, Siriwanarangsan P, Stewart-Brown S,
Ditsch N, Lichtner P, Schmutzler RK, Ito H, Iwata H, Tajima K, Tseng C-C, Stram DO, van den Berg
D, Yip CH, Ikram MK, the Y-C, Cai H, Lu W, Signorello LB, Cai Q, Noh D-Y, Yoo, Miao H, Iau PT,
Teo YY, McKay J, Shapiro C, Ademuyiwa F, Fountzilas G, Hsiung C-N, Yu J-C, Hou M-F, Healey
CS, Luccarini C, Peock S, Stoppa-Lyonnet D, Peterlongo P, Rebbeck TR, Piedmonte M, Singer CF,
Friedman E, Thomassen M, Offit K, van Overeem Hansen T, Neuhausen SL, Szabo CI, Blanco I,
Garber J, Narod SA, Weitzel JN, Montagna M, Olah E, Godwin, Yannoukakos D, Goldgar DE,
Caldes T, Imyanitov EN, Tihomirova L, Arun BK, Campbell I, Mensenkamp AR, van Asperen CJ, van
Roozendaal KEP, Meijers-Heijboer HEJ, Collée JM, Oosterwijk JC, Hooning MJ, Rookus MA, van
der Luijt RB, van Os TAM, Evans DG, Frost D, Fineberg E, Barwell J, Walker L, Kennedy MJ, Platte
R, Davidson R, Ellis SD, Cole T, Bressac-de Paillerets B, Buecher B, Damiola F, Faivre L, Frenay
M, Sinilnikova OM, Caron O, Giraud S, Mazoyer S, Bonadona V, Caux-Moncoutier V, ToloczkoGrabarek A, Gronwald J, Byrski T, Spurdle AB, Bonanni B, Zaffaroni D, Giannini G, Bernard L,
Dolcetti R, Manoukian S, Arnold N, Engel C, Deissler H, Rhiem K, Niederacher D, Plendl H, Sutter
C,Wappenschmidt B, Borg Å, Melin B, Rantala J, Soller M, Nathanson KL, Domchek SM, Rodriguez
GC,Salani R, Geschwantler Kaulich D, Tea M-K, Paluch SS,Laitman Y, Skytte A-B, Kruse TA,
Jensen UB, Robson M, Gerdes A-M, Ejlertsen B,Foretova L, Savage SA, Lester J, Soucy P,
Kuchenbaecker KB, Olswold C,Cunningham JM, Slager S, Pankratz VS, Dicks E, Lakhani SR,
Couch FJ, Hall P, Monteiro ANA, Gayther SA, Pharoah PDP, Reddel RR, Goode EL, Greene MH,
Easton DF, Berchuck A, Antoniou AC, Chenevix-Trench G, Alison M Dunning Multiple. Independent
variants at the TERT locus are associated with telomere length and risks of breast and ovarian
cancer. Nat Genet. 2013 Apr;45(4):371-84. doi: 10.1038/ng.2566. PubMed PMID: 23535731.
137. Xuan D, Li G, Cai Q, Deming-Halverson S, Shrubsole MJ, Shu X-O, Kelley MC, Zheng W, Long J.
APOBEC3 deletion polymorphism is Associated with Breast Cancer Risk among women of European
Ancestry. Carcinogenesis. (ACCEPTED)
Book Chapters
1.
Xiong DH, Long JR, Xiao S, Deng HW, “Pharmacogenomic studies of osteoporosis” in Current
Topics in Osteoporosis, ed. Deng HW, Liu YZ, Guo CY, and Chen D. World Scientific Publishing
Co., 2005, pp 444-463
2.
Long JR, “Genes in Estrogen Metabolism Pathway and Breast Cancer” in Current Topics in Human
Genetics: Studies in Complex Diseases, ed. Deng HW, Shen H, Liu YJ. World Scientific Publishing
Co. Pte. Ltd. Singapore ., 2007, pp 759-772.
3.
Zheng W, Long JR. “Epidemiological Studies of Genetic Factors for Cancer”. Fundamentals of
Cancer Epidemiology, 2nd Edition. Nasca PC and Pastides H (Editors). Sudbury, MA: Jones and
Bartlett, 2008, pp 137-140
Conference Presentations (peer reviewed):
1.
Long JR, Dvornyk V, Shen H, Zhao L, Zhang Y, Deng HW. 2002. Differentiation of Caucasian and
Asian Populations at Six Candidate Loci for Bone Mineral Density. J Bone Miner Res 17: S323.
ASBMR 25th Annual Meeting, San Antonio, TX.
2.
Long JR, Deng HW, Zhang Y, Zhao L, Hofer E, Seemann C, O’Brien D. 2002. Rapid Purification of
Archival-Quality DNA from Large Whole Blood Samples Using a New Rapid Protocol. Am J Hum
Genet 71(supple): 358. ASHG 52th Annual Meeting, Baltimore, MD.
3.
Liu YZ, Deng HY, Long JR, Zhang YY, Lu SB, Xu FH, Shen H, Liu YJ, Huang QY, Zhao LJ,
Conway T, Recker RR, Deng HW. 2002. A confirmation and extension study for linkage to an
important complex trait related to osteoporotic fractures-height. J Bone Miner Res 17: S321.
ASBMR 25th Annual Meeting, San Antonio, TX.
4.
Shen H, Zhao LJ, Long JR, Zhang YY, Elze L, Recker RR, Deng HW. 2002. Testing of association
and/or linkage for five candidate genes with peak BMD in US Caucasian nuclear families. J Bone
Miner Res 17: S424. ASBMR 25th Annual Meeting, San Antonio, TX.
5.
Long JR, Shen H , Zhao LJ, Zhang YY, Elze L, Recker RR, Deng HW. 2002. Testing of association
and/or linkage for five candidate genes with peak BMD in US Caucasian nuclear families. 3rd
Annual Great Plains States Society for Molecular Biology and Genetics, Omaha, NE.
6.
Liu YZ, Deng HY, Long JR, Zhang YY, Lu SB, Xu FH, Shen H, Liu YJ, Huang QY, Zhao LJ,
Conway T, Recker RR, Deng HW. 2002. A confirmation and extension study for linkage to an
important complex trait related to osteoporotic fractures-height. 3rd Annual Great Plains States
Society for Molecular Biology and Genetics, Omaha, NE.
7.
Dvornyk V, Long JR, Zhao LJ, Zhang YY, Deng HW. 2002. Differentiation of Caucasian and Asian
populations at six candidate loci for bone mineral density. 3rd Annual Great Plains States Society
for Molecular Biology and Genetics, Omaha, NE.
8.
Zhao LJ, Long JR, Shen H, Liu PY, Zhang YY, Xiao P, Xiong DH, Elze L, Recker RR, Deng HW.
2003. Testing Association and Linkage of 8 Candidate Genes with BMD in 405 Caucasian Families
Using Multiple SNP Markers and Haplotypes. J Bone Miner Res 18: S68. ASBMR 26th Annual
Meeting, Minneapolis, MN.
9.
Xiao P, Shen H, Long JR, Xu FH, Zhao LJ, Liu YJ, Zhang YY, Xiong DH, Araujo S, Liu YZ, Dvornyk
V, Davies KM, Conway T, Recker R, Deng HW. 2003. A Large-scale Genome Wide Scan for QTLs
Underlying BMD Variation in an Extended Sample. J Bone Miner Res 18: S125. ASBMR 26 th
Annual Meeting, Minneapolis, MN.
10. Xiong DH, Xu FH, Long JR, Zhao LJ, Liu YJ, Zhang YY, Xiao P, Shen H, Araujo S, Liu YZ, Dvornyk
V, Davies KM, Conway T, Recker R, Deng HW. 2003. A Large-scale Whole Genome Scan for
QTLs Influencing Bone Size Variation in an Extended Sample. J Bone Miner Res 18: S125.
ASBMR 26th Annual Meeting, Minneapolis, MN.
11. Dvornyk V, Long JR, Xiong DH, Deng HW. 2003. Allele frequencies of 41 SNPs in 10 candidate
genes for osteoporosis and obesity in a large Caucasian sample and comparison with the data from
public databases and other studies. Am J Hum Genet, 73(Suppl.): 1189. ASHG 53 rd Annual
Meeting, Baltimore, MD.
12. Xiao P, Shen H, Long JR, Xu FH, Zhao LJ, Liu YJ, Zhang YY, Xiong DH, Araujo S, Liu YZ, Dvornyk
V, Davies KM, Conway T, Recker RR, Deng HW. 2003. A Large-scale Genome Wide Scan for
QTLs Underlying BMD Variation in an Extended Sample. 4th Annual Great Plains States Society for
Molecular Biology and Genetics, Omaha, NE.
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Xiong DH, Xu FH, Long JR, Shen H, Xiao P, Zhao LJ, Zhang YY, Zhou Q, Araujo S, Liu YJ, Liu YZ,
Dvornyk V, Davies KM, Conway T, Recker RR, Deng HW. 2003. A Large-scale Whole Genome
Scan for QTLs Influencing Bone Size Variation in an Extended Sample. 4th Annual Great Plains
States Society for Molecular Biology and Genetics, Omaha, NE.
Liu YJ, Xu FH, Shen H, Liu YZ, Zhao LJ, Long JR, Zhang YY, Xiao P, Xiong DH, Dvornyk V, Araujo
S, Li JL, Conway T, Davies KM, Recker RR, and Deng HW. 2004. A Genomewide Scan for Obesity
Phenotypes in an Extended Sample: Suggestive Linkage on 20q13. Lipids and the Pathophysiology
of Obesity Conference (NIH) Wahsington, DC.
Long JR, Tang LM, Qiu XP, Zeng FT, Xie XH, Zhang YP. 2004. Sequence variation inthe rabbit
major histocompatibility complex DQA gene. Proceedings of the 8th World Rabbit Congress. 96101, Mexico.
Long JR et al. Functional Polymorphisms of the CYP1B1 Gene May Predict the Onset of Natural
Menopause in Chinese Women. The American Society of Human Genetics (ASGH) 55th Annual
Meeting, Oct 2005, Salt Lake City, UT.
Dai Q, Zheng W, Xu WH, Long JR, Cai Q, Xiang YB, Shu XO. Interaction of soy intake and
HSD17B1 gene polymorphisms in the risk of endometrial cancer. 97th American Association of
Cancer Research (AACR) Annual Meeting, April 2006. Washington D.C.
Su Y, Long JR et al. Association of genetic polymorphisms of steroid sulfatase and estrogen
sulfotransferase with breast cancer risk. 97th American Association of Cancer Research (AACR)
Annual Meeting, April 2006. Washington D.C.
Deming SL, Cai Q, Xu WH, Wen W, Kataoka N, Xiang YB, Long JR, et al. Genetic Variation in the
Estrogen Receptor-Alpha Gene, Estrogen Exposure, and Risk of Endometrial Cancer. 97th
American Association of Cancer Research (AACR) Annual Meeting, April 2006. Washington D.C.
Shin A, Shrubsole MJ, Cai Q, Smalley WE, Long JR, Shyr Yu, Ness RM, Zheng W. Cigarette
smoking, meat intake, and gene polymorphisms in relation to colorectal polyps risk. Fifth AACR
International Conference on Frontiers in Cancer Prevention Research, Nov 12-15, 2006.
Murff HJ, Shrubsole MJ, Cai Q, Smalley WE, Long JR, Shyr Yu, Ness RM, Zheng W. NSAID use,
polymorphism in CYP2C9 and UGT1A6 and colon adenoma risk. Fifth AACR International
Conference on Frontiers in Cancer Prevention Research, Nov 12-15, 2006.
Long JR, Shu XO, Cai Q, Zheng W. Common polymorphisms in the BRCA1 and BRCA2 genes are
not associated with breast cancer risk. The American Society of Human Genetics (ASGH) 57th
Annual Meeting, Oct 2007, San Diego, CA.
Matthews C, Cai Q, Long JR, Li C, Jiang L, Gao YT, Zheng W. Associations between LEP and
LEPR and risk for breast cancer. Sixth AACR International Conference on Frontiers in Cancer
Prevention Research, Dec, 2007; Philadelphia, PA.
Khoo US, Chan KY, Liu W, Long JR, Yip SP, Chan SY, Shu XO, Chua DT, Cheung AN, Ching JC,
Cai H, Au GK, Chan M, Foo W, Ngan HY, Gao YT, Ngan ES, Garcia-Barcelo MM, Zheng W, Khoo
US. The functional -969C/T promoter polymorphism in BRCA1 decreases breast cancer risk in
Chinese women. 98th American Association of Cancer Research (AACR) Annual Meeting, April
2007, Los Angeles, CA.
Cai Q, Shu XO, Long JR, Levy S, Gao YT, Zheng W. Comprehensive haplotype analyses of BCL2
gene variations and breast cancer risk. 98th American Association of Cancer Research (AACR)
Annual Meeting, April 2007, Los Angeles, CA.
Deming S, Zheng W, Xu WH, Long JR, Cai Q, Xiang YB, Shu XO. IGF pathway gene variants and
risk of endometrial cancer. 99th American Association of Cancer Research (AACR) Annual
Meeting, April 2008. San Diego, CA.
Long JR, Shu XO, Gao YT, Li C, Qu S, Cai Q, Zheng W. Genetic polymorphisms in the Diasporin genes
and breast cancer survival. The American Society of Human Genetics (ASGH) 58th Annual Meeting, Nov
2008, Philadelphia, PA.
Cui Y, Shu XO, Cai Q, Wen W, Ruan Z, Long JR, Gao YT, Zheng W. Joint effects of XRCC1 and
p53 genotypes on breast cancer survival. 99th American Association of Cancer Research (AACR)
Annual Meeting, April 2008. San Diego, CA.
Qu S, Long JR, Cai Q, Cai H, Shu XO, Gao YT, Zheng W. Genetic polymorphisms of metastasis
suppressor gene NME1 and breast cancer survival. 99th American Association of Cancer Research
(AACR) Annual Meeting, April 2008. San Diego, CA.
Beeghly-Fadiel A, Long JR, Gao YT, Li C, Cai Q, Zheng Y, Ruan ZX, Shu XO, Deming S, Lu W,
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Zheng W. A two-stage case-control study of common MMP-7 polymorphisms and breast cancer
susceptibility. 99th American Association of Cancer Research (AACR) Annual Meeting, April 2008.
San Diego, CA.
Cai Q, Shu XO, Long JR, Levy S, Gao YT, Zheng W. Comprehensive haplotype analyses of TP73
gene variations and breast cancer risk. 100th American Association of Cancer Research (AACR)
Annual Meeting, April 2009. Denver, CO.
Beeghly-Fadiel AC, Lu W, Cai Q, Long JR, Gao YT, Shu XO, Zheng W. FLT1/VEGFR1 genetic
variation and breast cancer susceptibility: A report from the Shanghai Breast Cancer Study. 100th
American Association of Cancer Research (AACR) Annual Meeting, April 2009. Denver, CO.
Deming SL, Gao YT, Long JR, Shu XO, Beeghly-Fadiel A, Cai Q, Lu W, Zheng W. Genetic
variation in estrogen esterification pathway genes ACAA1, ACAA2, and LCAT and breast cancer
risk. 100th American Association of Cancer Research (AACR) Annual Meeting, April 2009. Denver,
CO.
Zhu XZ, Shrubsole MJ, Ness RM, Cai QY, Long JR, Chen Z, Deng XQ, Luo JF, Smalley WE,
Zheng W, Dai Q. Calcium intake, CASR polymorphisms and phenotype, and the risk of colorectal
adenoma: results from Tennessee Colorectal Polyp Study. 101th American Association of Cancer
Research (AACR) Annual Meeting, April 2010. Washington, DC.
Deng XQ, Shrubsole MJ, Ness RM, Long JR, Cai QY, Chen Z, Zhu XZ, Luo JF, Smalley WE,
Zheng W, Dai Q. Genetic polymorphisms in the PTH and PTHR1 genes and colorectal adenoma
risk. 101th American Association of Cancer Research (AACR) Annual Meeting, April 2010.
Washington, DC.
Beeghly-Fadiel A, Zheng W, Lu W, Cai H, Long J, Gao YT, Delahanty R, Cai Q, Shu X-O.
Transforming growth factor beta polymorphisms and breast cancer survival among Chinese
women. 102th American Association of Cancer Research (AACR) Annual Meeting, April 2011.
Orlando, FL.
Deng X, Shrubsole MJ, Ness RM, Cai QY, Edwards T, Long J, Chen Z, Su Y, Zhu X, Sun P, Luo J,
Smalley WE, Zheng W, Dai Q. LB-452/13 - Genetic polymorphisms in the TRPM7 gene and
colorectal adenoma risk. 102th American Association of Cancer Research (AACR) Annual Meeting,
April 2011. Orlando, FL.
Zhu X, Shrubsole MJ, Ness RM, Cai Q, Edwards TL, Long J, Chen Z, Deng X, Sun P, Luo J,
Smalley WE, Zheng W, Dai Q. The relationship of calcium and magnesium intakes, VDR
polymorphisms and the risk of colorectal adenoma: results from the Tennessee Colorectal Polyp
Study. 102th American Association of Cancer Research (AACR) Annual Meeting, April 2011.
Orlando, FL.
Sun P, Shrubsole MJ, Ness RM, Cai Q, Long J, Edwards T, Chen Z, Zhu X, Deng X, Luo J,
Smalley WE, Zheng W, Dai Q,. Calcium intake, CABP1 polymorphisms, and the risk of colorectal
adenoma: Results from Tennessee Colorectal Polyp Study. 102th American Association of Cancer
Research (AACR) Annual Meeting, April 2011. Orlando, FL.
Delahanty RJ, Xiang YB, Spurdle A, Beeghly-Fadiel, Long J, Thompson D, Tomlinson I, Yu H,
Lambrechts D, Dork T, Goodman M, Salvesen H, Lu W, Cai Q, Zheng W, Shu XO. Polymorphisms
in inflammation pathway genes and endometrial cancer. American Association of Cancer Research
(AACR) Annual Meeting, April 2012.Chicago, IL
Zhu X, Shrubsole MJ, Ness RM, Cai Q, Long J, Chen Z, Deng X, Luo J, Smalley WE, Edwards T,
Zheng W, Dai Q. Two phase study of KCNJ1 polymorphisms, calcium, magnesium and colorectal
adenoma risk, results from the Tennessee Colorectal Polyp Study. American Association of Cancer
Research (AACR) Annual Meeting, April 2012.Chicago, IL
Ma X, Beeghly-Fadiel , Cai Q, Lu W, Gao YT, Long J, Zheng B, Shi J, Zheng Y, Shu XO, and
Zheng W. Transforming growth factor beta signaling pathway variants and breast cancer risk:
results from the Shanghai Breast Cancer Genetics Study. American Association of Cancer
Research (AACR) Annual Meeting, April 2012.Chicago, IL