jane12226-sup-0001-FigS1-S4-TableS1-S5-References

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1
Supporting Information
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Revisiting food-based models of territoriality in solitary predators
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Figure S1. Changes in lynx population density and wild rabbit abundance throughout
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the study period.
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Figure S2. Remarkable cases of spatial overlap at home range and core area levels
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detected throughout the study period.
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Figure S3. 3-D scatterplot showing the relationship between spatial overlap at home
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range and core area levels and range sizes for lynx dyads.
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Figure S4. Histogram showing the distribution of distances between simultaneous
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positions of neighboring lynx females.
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Table S1. Detailed results for generalized additive mixed models that test for non-linear
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relationships between spatial overlap and food availability where smoother for the
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relative abundance of rabbits is estimated for lynx with and without extra food pooled.
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Table S2. Detailed results for generalized additive mixed models that test for non-linear
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relationships between spatial overlap and food availability including smoother for the
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relative abundance of rabbits according with the presence of extra food.
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Table S3. Detailed results for generalized additive mixed models that test for non-linear
19
relationships between spatial overlap and food availability using an alternative measure
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of spatial overlap following Atwood and Weeks (2003).
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Table S4. Detailed results for generalized additive mixed models showed in Table S1
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that test for non-linear relationships between spatial overlap and food availability
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without covariates.
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Table S5. Detailed results for generalized additive models that test for non-linear
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relationships between lynx population density and relative abundance of wild rabbits.
1
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Figure S1. Changes in lynx population density (individuals 100 km-2; only sub-adult
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and adult individuals, see text for details) and the relative abundance of wild rabbits
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(rabbits km-1, see text for details) throughout the study period (note that both estimates
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are only shown for those years with data on lynx spatial ecology. Circles denote records
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of lynx population density in Vera (VE, black), and Coto del Rey (CR, grey). Upward
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triangles refer to the annual maximum relative abundance of wild rabbits (between April
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and July), whereas downward triangles refer to the annual minimum (between August
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and November). Black triangles refers to VE and grey triangles to CR.
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VE
CR
14
25
12
10
15
8
10
6
-1
20
4
5
2
0
1985
35
16
Wild rabbits km
-2
Lynx density (individuals 100 km )
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0
1990
1995
2000
2005
2010
Year
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37
2
38
Figure S2. Occasional cases of remarkable spatial overlap of home ranges (HR; 90%
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probability contour of positions distribution) and core areas (CA, 50% probability
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contour of positions distribution). Black boxes above the X-axis indicate years with
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lynx data (12 years). Large grey open circles denote cases recorded between August and
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November (i.e. low rabbit abundance period). The vertical dashed line separates cases
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between areas (VE and CR). Shaded areas denote extraordinary events: the rabbit
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population crash following the introduction of the rabbit haemorrhagic disease in 1990
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(Moreno et al. 2007), a period of heavy rains (1995-1997) that further decimated the
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rabbit population (Palomares 2003), and experimental supplementation of food between
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2004 and 2008 (López-Bao, Rodríguez & Palomares 2008). The vertical white line
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denotes the outbreak of the feline leukemia virus in CR in 2007, which led to the death
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of 5 lynx in this area in a 6-month period (Meli et al. 2009).
HR overlap
CR
VE
CA overlap
0.6
Spatial overlap
0.5
0.4
0.3
0.2
0.1
1985
50
1990
1995
2000
2005
2010
Year
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3
52
References
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López-Bao, J.V., Rodríguez, A. & Palomares, F. (2008) Behavioural response of a
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trophic specialist, the Iberian lynx, to supplementary food: patterns of food use and
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implications for conservation. Biological Conservation, 141, 1857˗1867.
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Meli, M.L., Cattori, V., Vargas, A., Martínez, F., López, G., Zorrilla, I., Muñoz, A.,
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Palomares, F., López-Bao, J.V., Pastor, J., Tandon, R., Willi, B., Hofmann-Lehmann, R.
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& Lutz, H. (2009) Feline leukemia virus and other pathogens as important threats to the
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survival of the critically endangered Iberian Lynx (Lynx pardinus). PLOS ONE, 4,
60
e4744.
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Moreno, S., Beltrán, J.F., Cotilla, I., Kuffner, B., Laffitte, R., Jordán, G., Ayala, J.,
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Quintero, M.C., Jiménez, A., Castro, F., Cabezas, S. & Villafuerte, R. (2007) Long-term
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decline of the European wild rabbit (Oryctolagus cuniculus) in south-western Spain.
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Wildlife Research, 34, 652-658.
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Palomares F. (2003) The negative impact of heavy rains on the abundance of a
Mediterranean population of European rabbits. Mammalian Biology, 68, 224–234.
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Figure S3. 3-D scatterplot showing the relationship between spatial overlap of home
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ranges (HR; 90% probability contour of positions distribution) and core areas (CA, 50%
79
probability contour of positions distribution) and range sizes (HR and CA) for dyads of
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neighbouring lynx (individuals A and B).
0.6
0.5
0.4
HR overlap
0.3
0.2
0.1
0.0
70
60
50
40
30
20
2
10
10
Home range A (km )
15
20
Home range B (km2)
5
0
35
30
25
0
0.25
0.20
0.15
CA overlap
0.10
0.05
0.00
14
12
10
8
2
81
Core Area A (km )
6
4
2
0
0
2
4
6
8
18
16
14
12
10
Core area B (km2)
82
83
84
5
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Figure S4. Histogram showing the distribution of distances between simultaneous
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positions of neighboring lynx females (500 m intervals). Grey bar: 0 - 500 m interval.
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89
90
91
92
93
94
95
96
97
98
6
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Table S1. Parameter estimates (± SE) in the generalized additive mixed models that test
100
for non-linear relationships between spatial overlap and food availability. A smoother
101
for the relative abundance of wild rabbits (rabbit availability) is estimated for lynx with
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and without extra food pooled. The levels “extra food (absence)” and “area (VE)” are
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included in the intercept. BIC = Bayesian Information Criterion. BIC tends to be more
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conservative and less prone to over-parameterization than Akaike’s information
105
criterion (Bolker 2008).
Home range
estimate SE
Parametric coefficients:
Intercept
Extra food (presence)
Area (CR)
Radio-tracking effort
0.75
0.12
-0.41
-0.01
0.207
0.074
0.102
1
3.08
BIC = 42.46
P
0.001
0.21
0.09
0.22
0.01
Smooth terms:
ƒ (rabbit availability)
ƒ (lynx density)
106
107
edf
Core area
estimate SE
0.22
-0.07
-0.05
-0.01
edf
0.050
0.11
0.04
0.07
0.01
0.603
0.036
P
0.175
0.450
0.108
1
2.86
0.742
0.104
BIC = 6.68
edf = estimated degrees of freedom
108
109
110
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References
Bolker, B.M. (2008) Ecological Models and Data in R. Princeton University Press,
Princeton, NJ, USA.
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Table S2. Parameter estimates (± SE) in the alternative generalized additive mixed
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models that test for non-linear relationships between spatial overlap and food
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availability including smoothers for the relative abundance of wild rabbits during
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periods with and without extra food. The levels “extra food (absence)” and “area (VE)”
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are included in the intercept. BIC = Bayesian Information Criterion.
Home range
Parametric coefficients:
Intercept
Extra food (presence)
Area (CR)
Radio-tracking effort
estimate
SE
0.76
0.12
-0.41
-0.01
0.22
0.10
0.22
0.01
Smooth terms:
ƒ (rabbit availability) x absence
of extra food
ƒ (rabbit availability) x presence
of extra food
ƒ (lynx density)
BIC = 53.11
122
123
edf
Core area
P
0.001
0.246
0.075
0.127
estimate SE
0.13
-0.05
-0.01
-0.01
edf
0.10
0.05
0.08
0.01
P
0.230
0.362
0.856
0.478
1
0.731
3.22
0.133
1
0.647
1.77
0.413
3.05
0.029
2.36
0.026
BIC = 13.29
edf = estimated degrees of freedom
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128
129
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Table S3. Parameter estimates (± SE) in the generalized additive mixed models that test
133
for non-linear relationships between spatial overlap and food availability using an
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alternative measure of spatial overlap proposed by Atwood and Weeks (2003). Based on
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the size of adaptive kernel estimates of lynx home ranges (HR, 90% probability contour
136
of positions distribution) and core areas (CA, 50% probability contour of positions
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distribution), spatial overlap indices were calculated as follow:
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Overlap index = [(areaAB/sizeA) x (areaAB/sizeB)]0.5
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where areaAB is the area shared (overlapped) at either HR or CA level, and sizeA and
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sizeB are the individual sizes of HR or CA, respectively. Overlapped areas and the size
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of HR and CA were calculated using ArcGIS 9 (ESRI, California, USA). Modeling
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procedures and factors are explained in the methods section. The levels “extra food
143
(absence)” and “area (VE)” are included in the intercept.
Home range
Parametric coefficients:
Intercept
Extra food (presence)
Area (CR)
Radio-tracking effort
estimate
SE
0.76
0.16
-0.50
-0.01
0.18
0.09
0.19
0.01
Smooth terms:
ƒ (rabbit availability)
ƒ (lynx density)
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edf
Core area
P
0.001
0.085
0.013
0.545
1.27
4.50
0.235
0.001
estimate SE
0.19
0.03
-0.16
-0.01
edf
0.14
0.07
0.11
0.01
P
0.176
0.610
0.142
0.852
1
2.93
0.235
0.044
edf = estimated degrees of freedom
145
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References
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Atwood, T.C. & Weeks, H.P. (2003) Spatial home-range overlap and temporal
148
interaction in eastern coyotes: The influence of pair types and fragmentation. Canadian
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Journal of Zoology, 81, 1589-1597.
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Table S4. Parameter estimates (± SE) in the generalized additive mixed models that test
151
for non-linear relationships between spatial overlap and food availability (see Table S1)
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without covariates (area, lynx population density, radio-tracking effort). A smoother for
153
the relative abundance of wild rabbits (rabbit availability) is estimated for lynx with and
154
without extra food pooled. The level “extra food (absence)” is included in the intercept.
Home range
estimate SE
Parametric coefficients:
Intercept
Extra food (presence)
Smooth terms:
ƒ (rabbit availability)
155
156
0.30
0.12
edf
Core area
P
0.001
0.08
0.10
0.238
1.41
0.783
estimate SE
0.07
-0.05
edf
P
0.100
0.04
0.05
0.314
1
0.559
edf = estimated degrees of freedom
157
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164
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166
167
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169
10
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Table S5. Detailed results of four generalized additive models that test for non-linear
171
relationships between lynx population density (individuals 100 km-2; only sub-adult and
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adult individuals, see text for details) and four estimates of the relative abundance of
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wild rabbits (rabbits km-1, denoted as "WRA" in the table) throughout the study period
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in VE and CR (total number of areas*year = 14). We tested four different estimates of
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relative abundance of wild rabbits: the maximum (spring) and minimum (autumn)
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values of wild rabbit abundance the same year, and the year before, that lynx population
177
density was recorded. We considered the maximum and the minimum values of rabbit
178
availability because they are proxies of two population processes affecting lynx density:
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Productivity may be associated with prey availability in spring, whereas survival may
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be associated with prey availability in autumn. The year before was considered to
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explore the influence of time-delayed effects of prey availability on lynx population
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density. The presence/absence of extra food and the area were considered as covariates
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in all models.
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MODEL considering:
Parametric coefficients:
Extra food
Area
Smooth terms:
ƒ (WRA)
185
186
Maximum WRA
the same year
F
df
2.22
32.3
1
1
P
Minimum WRA
the same year
F
0.117 2.26
0.001 26.6
edf
0.07
1
df
1
1
P
Maximum WRA
the year before
F
0.164 1.72
0.001 26.9
1
1
1
P
F
0.219 3.56
0.001 35.3
edf
edf
0.799 0.01
df
Minimum WRA
the year before
0.977 0.88
1
df
P
1
1
0.105
0.001
edf
0.369 2.97
3.6
edf = estimated degrees of freedom
11
0.107
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