Supporting Table 5. Metabolic pathways affected in tic.
tic gene list was analyzed with the Skypainter tool from Reactome to look for pathways represented in the dataset. Red light signaling, circadian clock,
flavonoid metabolism, starch, and amino-acid degradation were the highlighted processes.
Un-adjusted probability of seeing N or
more genes in this Event by chance
5.20E-05
Number of genes in your query
which map to this Event
10
Total number of genes
involved in this Event
32
Identifier of
this Event
pathway
64945
PIF related growth
response to light
3.40E-04
7
20
65126
Shade avoidance
and response to
light
6.00E-04
6
16
64709
Genes regulated by
Red:Far Red ratio
6.50E-04
7
22
65249
Circadian oscillator
8.20E-04
13
67
67668
Photoperiod
pathway
9.30E-04
10
44
65397
2.60E-03
4
9
1809
Circadian Cycle
Flavonoid
biosynthesis
(KEGG)
Submitted genes
At2g44910, At4g25260,
At4g16780, At3g62090,
At5g47370, At3g45780,
At1g09570, At2g42870,
At5g61380, At2g43010
At2g44910, At4g25260,
At4g16780, At3g62090,
At5g47370, At2g42870,
At2g43010
At2g44910, At4g25260,
At4g16780, At3g62090,
At5g47370, At2g42870
At1g01060, At2g25930,
At1g22770, At2g46790,
At5g61380, At5g02810,
At3g46640
At1g01060, At1g53090,
At5g24470, At5g63470,
At1g28050, At2g25930,
At1g09570, At1g22770,
At2g46790, At5g60100,
At5g61380, At5g02810,
At3g46640
At1g01060, At5g24470,
At2g25930, At1g09570,
At1g22770, At2g46790,
At5g60100, At5g61380,
At5g02810, At3g46640
At3g51240, At5g13930,
At5g17050, At5g08640
5.30E-03
2
2
42410
5.30E-03
5.30E-03
2
2
2
2
42959
63732
5.30E-03
2
2
63953
5.30E-03
2
2
64487
5.30E-03
2
2
66556
5.30E-03
2
2
67953
6.50E-03
3
6
67266
7.70E-03
5
18
32318
8.60E-03
4
12
20299
1.20E-02
4
13
68868
1.50E-02
1.50E-02
2
2
3
3
14477
17865
methionine
degradation II
(AraCyc)
L-methionine +
H2O <=> NH3 + 2oxobutanoate +
methanethiol
PRR3 Binds TOC1
COL15 interacts
with the HAP5
protein AT5G63470
PIF6 interacts with
TOC1
PIF4 interacts with
GAI
PIF4 interacts with
TOC1
Interaction
between
photomorphogensi
s and the circadian
clock
starch degradation
(AraCyc)
arginine
degradation I
(AraCyc)
Evening Loop
3 H2O + GTP <=>
pyrophosphate +
2,5-diamino-6(ribosylamino)-4(3H)-pyrimidinone
5'-phosphate +
formate
D-ribulose-5-
At1g77670, At1g64660
At1g77670, At1g64660
At5g60100, At5g61380
At5g63470, At1g28050
At3g62090, At5g61380
At2g44910, At2g43010
At5g61380, At2g43010
At3g62090, At5g61380,
At2g43010
At4g17090, At5g18670,
At5g55700, At3g52180,
At1g69830
At2g16500, At3g08860,
At1g79440, At2g38400
At1g01060, At2g25930,
At1g22770, At3g46640
At5g59750, At2g22450
At5g59750, At2g22450
1.50E-02
4
14
18808
phosphate <=> 3,4dihydroxy-2butanone-4-P +
formate
biotin biosynthesis
II (AraCyc)
chlorophyllide a
biosynthesis
(AraCyc)
2.30E-02
9
58
32887
2.30E-02
3
9
63432
2.90E-02
2
4
25592
2.90E-02
2
4
69427
3.10E-02
4
17
66281
3.10E-02
3
10
20193
3.10E-02
3
10
27507
3.10E-02
3
10
65764
4.60E-02
2
5
14252
Morning Loop
D-fructose-6phosphate + UDPD-glucose <=>
sucrose-6'phosphate + UDP
UDP-D-Glucose + DFructose 6phosphate =>
Sucrose 6phosphate + UDP
Starch degradation
in leaves
Long-linear-glucans
<=> maltose
glutamate
degradation II
(AraCyc)
Seedling
deetiolation
L-alanine + 6carboxyhexanoylCoA <=> CO2 +
coenzyme A + 8amino-7oxononanoate
At4g36480, At3g08860,
At1g08630, At2g38400
At5g18660, At3g14930,
At2g43020, At4g03140,
At5g54190, At3g08860,
At2g38400, At5g02540,
At4g27440
At1g01060, At2g46790,
At5g02810
At5g17310, At5g20280
At5g17310, At5g20280
At4g17090, At1g10760,
At3g29320, At1g69830
At4g17090, At5g18670,
At5g55700
At3g08860, At1g79440,
At2g38400
At3g45780, At1g09570,
At2g43010
At4g36480, At1g08630
4.60E-02
2
5
16699
4.60E-02
2
5
25067
4.60E-02
2
5
32167
4.60E-02
2
5
34032
Long-linear-glucans
<=> Short-glucans
glutamate-1semialdehyde <=>
5-amino-levulinate
glutamate-1semialdehyde <=>
5-amino-levulinate
Starch <=> Largebranched-glucans
At3g52180, At1g69830
At3g08860, At2g38400
At3g08860, At2g38400
At3g52180, At1g69830