Issue 40, April 2006
News Contents
ICEAGE Project Starts
International Summer School on
Grid Computing: APPLY NOW!
The Open Science Grid
Grid and Chips!
First Public lecture in Series
Announced
Call for papers: AHM2006
NeSC News
www.nesc.ac.uk
ICEAGE Project Starts
The ICEAGE (International Collaboration to Extend and Advance Grid Education) project
Kicked off with a Meeting at the National e-Science Centre in Edinburgh on the 23rd
and 24th March. The Project Office will be based at NeSC.
The Project sets out to stimulate and support advances in grid education throughout
Europe. ICEAGE will create a roadmap and insights into the future of education in
an era of pervasive e-Infrastructure.
Grid Education in rapidly advancing scientific domains is particularly labour intensive.
It must draw on the expertise of a small community of pioneers. A major objective
of ICEAGE is to provide an effective mechanism for distilling their knowledge and
rapidly propagating it across Europe. ICEAGE will create a forum to bring together
experts worldwide to expand and advance Grid Education. Building on EGEE,
ICEAGE will demonstrate the wide potential of Grids, revealing new creative and
business opportunities which will lead to the inclusion of social, ethical and economic
issues in educational programmes. ICEAGE will show clearly how education can
benefit from e-Infrastucture.
Call for pspers: Digital libraries and
e-Science
The main aim of the ICEAGE Project is to stimulate and support advances in grid
education throughout Europe by meeting the following objectives:
eProtein Scientific Meeting &
Workshop
•
•
Euro-Southeast Asia 2006 ICT
Forum
•
e-Science Institute call for
Workshops and Meeting proposals
and theme topics
EGEE II project Started
Current Vacancies
For more information on anything
mentioned in the newsletter, please
contact:
Alison McCall
alison@nesc.ac.uk
Telephone 0131 651 4783
Newsletter produced by:
Alison McCall and Jennifer Hurst
Next months deadline for articles
is: 24th April 2006
•
•
Achieving rapid growth in effective advanced grid education
Broadening engagement in an advanced grid education both geographically
and across disciplines and make best use of worldwide capacity for advanced
grid education
ICEAGE will enable students and educators to obtain and develop Grid
Education via sustained, large-scale, multi-purpose e-Infrastructure.
Deliver a stimulating programme of Educational Events, including
International Summer Schools
It aims for European Universities to adopt courses in many disciplines to
support the deployment and exploitation of e-Infrastructure. ICEAGE will
ensure that citizens are well prepared to use e-Infrastructure in their private
and professional lives. It will stimulate European educators by closely
coupling the ICEAGE forum with a pioneering educational system, based
on e-Infrastructure, involving a dynamic programme of events, shared
strategies, information and material.
Focused on the advancement of Grid Education in Europe, ICEAGE is aiming to
work with a number of users from European research and academic groups in
several scientific and application disciplines.
Project Partners
International Collaborative Partners currently are:
•
The National e-Science Centre, Edinburgh, UK
•
Universita’ degli Studi di Catania, Italy
•
SPACI (Southern Partnership for Advanced
Computational Infrastructures), Italy
•
CERN, Geneva
•
Kungliga Tekniska Högskolan, Stockholm
•
SZTAKI (Magyar Tudományos Akadémia
Számítástechnikai és Automatizálási
Kutató Intézet), Budapest
In addition ICEAGE has created a Forum to bring
together experts worldwide to expand and advance
Grid Education, 51 Founder Members from 21
Countries originally agreed to be Members of the
Forum.
Fore more information look at the project webpage:
http://www.iceage-eu.org/
Issue 40, April 2006
APPLY NOW! for International Summer School on
Grid Computing
Grid and Chips!
The next International Summer School in Grid Computing will
take place from the 9th to the 21st of July 2006. The school
will be held in Italy, in the Jolly Hotel Delle Terme, on the
beautiful Island of Ischia, in the Bay of Naples. Students from
all over the world are invited to apply for the well established
school, now in its fourth year.
The UK Engineering and Physical Sciences Research Council
(EPSRC) in collaboration with leading design houses, chip
manufacturers and ECAD vendors is funding a £5.3M ($9.1M)
project which will apply Grid technologies and know-how to
tackle some of the fundamental challenges of nano-CMOS
design.
Many speakers have now been confirmed The school will
enjoy presentations from: Professor Dr Ian Foster presenting
a Vision of Grid Middleware. Dr Brooklin Gore (Industrial
Grid applications), Professor Dr Satoshi Matsuoka (NAREGI
grids), Prof Dr Miron Livny (Principles and Architectures of
High Throughput Computing), Dr Vincent Breton (HealthGrids),
and Gaetano Maron (GridCC: Real-time instrumentations
grids), Professor Dr. Malcolm Atkinson, UK e-Science Envoy
(principles, architectures and data), Dr. Erwin Laure (EGEE
production grids).
Progressive scaling of CMOS transistors, as tracked by the
International Technology Roadmap for Semiconductors (ITRS)
and captured in Moore’s law, has driven the phenomenal
success of the semiconductor industry, delivering larger,
faster, cheaper circuits. Silicon technology has now entered
the nano-CMOS era with 40 nm MOSFETs in mass production
now and sub-10 nm transistors scheduled for production in
2018. However the years of ‘happy scaling’ are over and
the fundamental challenges that the semiconductor industry
faces, at both technology and device level, will impinge deeply
upon the design of future integrated circuits and systems. It is
the case for example that trapping of a single electron in the
channel region of a device can alter its drive current by more
than 15%! Atomic level considerations of devices and design
libraries are essential and need to be coupled with the overall
design of circuits and systems.
Many of the speakers will also be available to discuss
concepts further with students out of lectures and give the
students the benefit of their vast experience in this area.
The extensive and challenging Provisional Curriculum for
the School is now available to view online on the website
http://www.dma.unina.it/~murli/ISSGC06/ and includes
presentations on topics such as Distributed system principles,
Foundations of distributed computing Architecture and
integration of Grid middleware Advancing computational
models, security and data management for Grids as well as
practical demonstrations. The students also take part in a fullday integrated practical.
Lead by the University of Glasgow, the project aims to
revolutionise the electronics design industry through Grid
technologies. Principal Investigator Professor Asenov from
Glasgow University states “This project brings together
leading semiconductor device, circuit and system experts
from academia and industry and e-scientists with strong
Grid expertise. Only by working in close collaboration, and
adequately connected and resourced by e-science and
Grid technology, can we understand and tackle the design
complexity of nano-CMOS electronics, securing a competitive
advantage for the UK electronics industry”.
Applications are invited from enthusiastic and ambitious
researchers who have recently started (or are about to
start) working on Grid projects. Students may come from
any country.They may be planning to pioneer or enable new
forms of e-Infrastructure, to engage in fundamental distributed
systems research or to develop new methods in any discipline
that depends on the emerging capabilities of e-Infrastructure.
Professor Sinnott from the National e-Science Centre at
the University of Glasgow who will lead the e-Science
development activity states “Through close collaboration with
OMII-UK we expect to revolutionise the way in which the
disparate teams involved in electronics design process work.
Our Grid efforts will be on four key areas: workflows, security,
data management and resource management, each targeted
to the real needs of the scientists we are to support”.
In all previous years the school has been oversubscribed.
Selection for the 2006 School is therefore competitive. We
expect to accept between 60 and 70 students.Applications
are accepted to the school until the 1 May 200 6. The
total number of applications is updated continually on the
summer school website. In all previous years the School
has been oversubscribed. Selection for the 2006 School is
therefore competitive. At the time of writing there are over 70
applications.
The university partners in this project include the Device
Modelling and the Microsystems Technology groups
(University of Glasgow), the Advanced Processor
Technologies group (University of Manchester), the Electronic
Systems Design Group (University of Southampton), the
Intelligent Systems group (University of York), the MixedMode Design Group (University of Edinburgh).
We will be looking for students with commitment and
enthusiasm for Grid research and development and expect
competence and experience in some aspects of software
development, distributed systems, computational systems,
data systems and Grid applications. Students will establish
their credentials from academic qualifications and experience.
We welcome educators who are planning to teach Grid
computing. Participants are expected to be comfortable using
spoken English.
The e-Science and Grid technology will be provided by the
National e-Science Centre (at the universities of Glasgow/
Edinburgh) and the e-Science North West (Manchester
University).
Two of the largest UK chip design companies ARM and
Wolfson Electronics; the world leader in design software
Synopsys, and the leading semiconductor chip manufacturers
Freescale, National Semiconductors and Fujtsu are the
industrial partners.
Website: http://www.dma.unina.it/~murli/ISSGC06/
The final deadline for applications is *1 May 2006* Preferred
date of application 21 April 2006.
NeSC News
Participation is free of charge but subject to registration
on-line
2
www.nesc.ac.uk
Issue 40, April 2006
Call For Papers: Fifth UK
e-Science All Hands Meeting
Reminder – Paper Deadline 1st May
First Public Lecture in Series Announced
The e-Science Institute is delighted to announce the first
in a series of public lectures associated with its thematic
programme.
The Fifth UK e-Science All Hands Meeting (AHM 2006)
will be held from 18-21st September 2006 at the East
Midlands Conference Centre in Nottingham, UK.There are
several options for participation (please note that to reflect
the increasing quality of the submissions, this year we are
asking for full papers to be submitted for review, rather than
abstracts.
Professor Jessie Kennedy, Leader of the Database and
Object Systems Group at Napier University and who is
leading the theme ‘Exploiting Diverse Sources of Scientific
Data’ will give a talk titled:
Integrating Diverse Sources of Scientific Data: Is it safe to
match on name?
A full review process will be managed by the AHM Programme
Committee. Details of the format required for the papers, and
how to submit is available at http://www.allhands.org.uk/
This talk will be of interest to anyone working with diverse
and distributed datasets and in particular to biologists, as Prof
Kennedy will be using the SEEK (http://seek.ecoinformatics.
org/) research project as a case study.
Call for Papers for All Hands Meeting 2006 Mini-Workshops
Mini-Workshops for the All Hands Meeting have now been
selected. You can find details of all nine Mini-Workshops at:
http://www.allhands.org.uk/programme/workshops/index.html
Time & Date: 25 April 2006 at 16:00 with tea & coffee on
arrival
Some Mini-Workshops are also calling for papers to be
submitted.
Location: The University of Edinburgh, Sanderson Building
(lecture theatre 1), Kings Buildings, Edinburgh, EH9 3JF
eSI also intends to web cast this talk. For further details of
the talk, theme, web cast details when they become available
please go to: http://www.nesc.ac.uk/esi/events/681/
More information can be found at www.allhands.org.uk and
information about submitting papers can be found at:
http://www.allhands.org.uk/submissions/index.html
Abstract of talk:
The wealth and diversity of scientific data collected and stored
is growing rapidly as automation increases and technological
costs diminish.Today’s researchers have to make best use
of this wealth of data resources in combination with the
data their own research provides. There is huge potential
for scientific discovery by combining information from these
multiple, diverse and distributed data resources. But their
sheer number, complexity and diversity makes this a daunting
task, with many research challenges. This talk will look at one
of the problems facing researchers; that of data integration
and in particular the issue of matching data sets using names.
The Open Science Grid
The first OSG Executive Director and Council Chair were
elected in February 2006, who will lead the operation
and expansion of the Open Science Grid. The OSG is a
nationwide community grid built by research groups from
United States universities and national laboratories that
enables collaborative research through distributed computing
technologies.
The Open Science Grid is a distributed computing facility
that enables innovative collaboration and research. The
OSG Consortium’s unique alliance of science researchers,
software developers and computing centers brings petascale
computing and storage resources into a uniform shared
cyberinfrastructure for scientific collaborations. The OSG
is supported by the National Science Foundation and the
U.S. Department of Energy’s Office of Science. For more
information visit www.opensciencegrid.org
http://www.opensciencegrid.org/ .
This is a particular problem facing biologists, but also applies
to other scientists such as astronomers. The Scientific
Environment for Ecological Knowledge (SEEK) research
project which aims to develop an environment to support
ecologists undertake ecological data analysis will be used as
a case study to explore the issues. Using a typical ecological
analysis scenario we will explore the problems of integrating
data sets and focus in on the specific problem of matching
data sets using scientific names for organisms. We will then
describe the approach being taken by SEEK and the wider
community to address these issues.
“The OSG opens up exciting opportunities for students to
apply powerful computing resources to new problems in
science, engineering, and commerce,” added Mike Wilde, the
OSG’s new Education Coordinator. “With OSG access, and
training in its use, we envision that more college and high
school students, and even visitors at science museums, can
experiment with the power of grid computing.”
OMII Southampton is recruiting a number of positions as result of its involvement in OMII-UK and other projects.
* Project Manager: http://www.jobs.soton.ac.uk/adminweb/jsp/jobs/sJobview.jsp?function=View&id=05R0660
* Software Engineers: http://www.jobs.soton.ac.uk/adminweb/jsp/jobs/sJobview.jsp?function=View&id=05R0661
* Technical Author:http://www.jobs.soton.ac.uk/adminweb/jsp/jobs/sJobview.jsp?function=View&id=05R0662
NeSC News
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Issue 40, April 2006
Call for Papers: SPECIAL ISSUE ON DIGITAL LIBRARIES AND eSCIENCE
International Journal on Digital Libraries
http://www.dlese.org/IJDL_eScience/
:
IMPORTANT DATES
Submissions are due: June 1, 2006 / Acceptance notifications: Sep 1, 2006
TOPIC OF THE SPECIAL ISSUE
There are an increasing number of initiatives in several countries targeted at supporting research into new forms of computational
infrastructure intended to transform the conduct of scientific research in areas such as chemistry, atmospheric science, and
earth science. These initiatives, which go under a variety of names including eScience, eResearch, and cyberinfrastructure, are
a response to the changing nature of scientific research, particularly in the natural and physical sciences, which is increasingly
dependent upon large data sets and high-end analysis and visualization tools. eScience approaches and techniques are also
beginning to appear in other disciplines such as the humanities and social sciences. Research issues being addressed in these
initiatives include information retrieval, information modeling, ontologies, systems interoperability, and policy issues associated
with providing transparent access to complex data sets. As such, these initiatives are concerned with many of the same
research issues that the international digital library community has been grappling with for the past decade. The purpose of this
special issue is to critically examine the role that digital libraries can and should play in this emerging eScience computational
infrastructure. Bringing the digital library and the emerging scientific infrastructure worlds together can lay the foundation for
providing truly integrated support for the entire process of science, from formulation of research questions to the publication of the
outcomes.
Papers are invited on the technical, social, and policy dimensions of eScience and digital libraries.
SUBMISSIONS
Due to the emerging nature of this field, we welcome a broad variety of lengths and publication types. All submissions need
to relate to the field of eScience, however. Please contact one of the editors for feedback and guidance. Manuscripts must
be written in English and should include a cover page with title, name and address (including email address) of author(s), an
abstract, and a list of keywords. Authors are encouraged to follow the formatting instructions at:
http://cimic.rutgers.edu/~ijdl/submission_index.htm
**Papers must be submitted via the web site: http://www.softconf.com/start/IJDL_escience**
eProtein Scientific Meeting and Workshop
Euro-Southeast Asia 2006 ICT Forum.
The EMBL-EBI, together with Imperial College London (IC)
and University College London (UCL), are delighted to invite
you to attend a one-day scientific meeting on Protein and
Genome Annotations on 24th April.
The European Commission, with the support of the
Association of Southeast Asian Nations (ASEAN),is
organising Euro-Southeast Asia 2006 Information and
Communications Technologies Forum (www.eusea2006.org).
EUSEA2006 is an open co-operation platform for European
and Southeast Asian ICT players to foster business, research,
policy and regulatory collaboration.
The meeting is funded by the UK Department of Trade and
Industry, BBSRC and the BioSapiens EU Project. The aim
of the meeting is to describe the current approaches, both
technical and scientific, which will allow contributions and
access to annotations from many different laboratories,
based on GRID DAS technologies. The meeting will be
followed by a two-day practical workshop addressing the use
and implementation of the systems designed by the eProtein
partners.
Hosted within IMBX Singapore’s infocomm & media
business exchange week 19-23 June 2006, the EUSEA2006
conference for over 800+ Europeans and Southeast Asian key
ICT players will foster mutually beneficial business, research,
policy and regulatory collaboration and opportunities.
EUSEA2006 offers a unique opportunity to hear about policy,
regulatory and research issues from key European & SEA
experts, to network, attend workshops and training courses
and to forge future ICT alliances.
eProtein, a three-year project funded through the BBSRC
E-Science and Bioinformatics Initiative, has addressed
structure-based annotation of protein sequences in the major
genomes using GRID technology to link the resources at
the three sites; http://www.e-protein.org. The meeting will
showcase this work and provide in-depth seminars and
training on the computational and biological aspects of the
project.
The EUSEA2006 Exhibition, the European ICT Pavilion,
will showcase latest European innovative technologies,
products and solutions in Audio-Visual, Satellite, Security
& Telecommunications to over 47,000 ICT professionals at
CommunicAsia2006 Trade Fair from 20th to 23rd June 2006,
Singapore, the perfect backdrop for learningall about the ICT
market in Southeast Asia.
The programme includes presentations from several partners
of the BioSapiens Network of Excellence, who will describe
how they are building on the work begun by the eProtein
project.
Participation is free of
charge but subject to
registration on-line at
www.eusea2006.org
The meeting will be held at the Wellcome Trust Conference
Centre, Hinxton, UK, on 24th April 2006, and registration is
free of charge.
Please register on the conference website,
http://www.ebi.ac.uk/Information/events/eprotein. Places at
the workshops are limited and participants will be contacted
after registration to confirm availability.
NeSC News
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Issue 40, April 2006
e-Science Institute
Call for Workshops and
Meeting Proposals and
Theme Topics
Call for Proposals to run Meetings and
Workshops at the e-Science Institute
Call for Topics for the e-Science Institute
Thematic Programme
The e-Science Institute invites proposals for meetings and
workshops to be run over the next twelve months commencing
in June 2006.
The e-Science Institute invites proposals for new themes to be
run over the next two years. Theme topics, as well as being
interesting in their own right, should address issues that are
relevant to applications researchers and be able to demonstrate
significant buy in from both the applications and computational
scientist communities. It is not intended that they address
only the sciences – all areas of academic research present
opportunities for the application of e-Science techniques.
eSI will pay for 1 or 2 speakers a day and will provide the
usual support in the form of experienced staff, organisation
and facilities. Researchers who want to organise a workshop
to engage in collaborative work (e.g. ‘hackathons’) should also
consider applying to the visitor programme for additional funds
to enable them to engage a larger group of participants.
To continue our rolling thematic programme, we are now calling
for proposals for topics for future themes to start August 2006 or
later. These will be reviewed by the eSI Science Advisory Board
which will meet in early June 2006, and should be submitted
no later than 19th April 2006 for initial consideration by the
Programme Committee. Proposals for theme topics can be
made either by the research community in which case eSI will
undertake to try to find an appropriate leader, or potential theme
leaders may put themselves forward along with the theme they
wish to develop.
Proposals for meetings will have to show a clear link with
e-Science – whether with well developed existing communities
or new communities in the early stages of applying e-Science
techniques to their research. eSI is actively looking to support
activities across all academic disciplines and encourages new
communities to take advantage of the significant expertise we
can offer, in particular in putting them in touch with technical
experts and computational scientists already engaged in
e-Science.
Further information on eSI themes is available at:
http://www.nesc.ac.uk/esi/themes/index.htm
Initial enquiries should be made by emailing lee@nesc.ac.uk
to check on availability.
To propose a theme or if you have any questions on Themes
or Meetings and Workshops, please contact Anna Kenway by
email anna@nesc.ac.uk or  +44 (0)131 650 9818
Proposals should be submitted no later than 19th April 2006
for initial consideration by that committee.
Further information on the eSI responsive mode is available at:
http://www.nesc.ac.uk/esi/arranging_events.html
EGEE II Project started
The Enabling Grids for e-science project brings together scientists and engineers from more than 90 institutions in over 30
countries world-wide to provide a seamless Grid infrastructure for e-Science that is available for scientists 24 hours-a-day.
Conceived from the start as a four-year project, the second two-year phase started on 1 April 2006, and is funded by the
European Commission.
Researchers in academia and industry already benefit from the EGEE e-Infrastructure, which simultaneously supports many
applications from diverse scientific areas, providing a common pool of resources, independent of geographic location, with
round-the-clock access to major storage, compute and networking facilities.
Expanding from originally two scientific fields, high energy physics and life sciences, EGEE now integrates applications from
many other scientific fields, ranging from geology to computational chemistry.
The EGEE-II project will significantly extend and consolidate this infrastructure, which links national, regional and thematic Grid
efforts, as well as interoperate with other Grids around the globe. The resulting high capacity, world-wide infrastructure greatly
surpasses the capabilities of local clusters and individual centres, providing a unique tool for collaborative compute-intensive
science (“e-Science”).
So far, several large- and small-scale communities use the EGEE infrastructure as an every-day tool for their work. The EGEE
production service is constantly growing, currently combining more than 20 000 CPUs and 10PB of storage in more than 200
sites worldwide. Applications deployed come from High Energy Physics, Life Sciences, Earth Sciences (including the industrial
application EGEODE), Astrophysics, and Computational Chemistry. EGEE-II will expand the portfolio of supported applications to
include Fusion as well as other disciplines. The next generation EGEE middleware “gLite” will improve the infrastructure and form
an even more dependable and scalable resource, able to meet the needs of a large, diverse e-Science user community.
For more information: http://www.eu-egee.org/
NeSC News
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Issue 40, April 2006
Forthcoming Events
April
27-28
eFrameworks meets eScience
e-Science Institute,
Edinburgh
27
ATLAS e-Science Project - Introductory software training
course
e-Science Institute,
Edinburgh
http://www.nesc.ac.uk/esi/
events/669/
4-5
DEISA SYMPOSIUM: Perspectives in High Performance
Computing
Bolonga, Italy
www.deisa.org/symposium
16
Browsing Genes and Genomes with Ensembl
e-Science Institute,
Edinburgh
http://www.nesc.ac.uk/esi/
events/678/
17
Browsing Genes and Genomes with Ensembl
e-Science Institute,
Edinburgh
http://www.nesc.ac.uk/esi/
events/677/
17
DCC Associate Network Meeting
e-Science Institute,
Edinburgh
http://www.nesc.ac.uk/esi/
events/673/
27
Ontology Engineering & Automated Reasoning
e-Science Institute,
Edinburgh
http://www.nesc.ac.uk/esi/
events/668/
International Summer School on Grid Computing
Jolly Hotel Delle
Terme, Ischia, Italy
http://www.dma.unina.it/~murli/
ISSGC06/
All Hands Meeting 2006
East Midlands
Conference Centre
http://www.allhands.org.uk/index.
html
GridPP
e-Science Institute,
Edinburgh
May
July
9-21
September
18-21
October
31-2 Nov
F/T Video Communications Technologist
Department of Computer Science
University College London
This month NeSc would like to welcome two
new members of staff:
Iain Coleman is the new Technical PA and will be
working with both Malcolm Atkinson for Gridnet 2 and
Jennifer Schopf for JISC.
We are looking for a talented self-starter to pilot, monitor,
maintain and develop all UCL’s video conferencing facilities
including ACCESS GRID, which are operated by the
Research Computing Community and the Media Resources
Department. The role is strongly client-oriented and requires
excellent communication and skills. Experience in the
development and presentation of training programmes would
be highly advantageous.
Lilly Hunter starts this month as the ICEAGE Project
manager, working with the Training, outreach and
Education Team.
Vacancy in Interactive European Grids project
This is a new post and therefore the post-holder will play a
key role in determining how these services will develop in the
future. Salary will be on UCL Grade 7, £27,286 - £33,006 per
annum including London Allowance.
The project will pick up the work started in CrossGrid in
May and will be done in collaboration with EGEE.
HOW TO APPLY: Full details and an application form can be
A contract of 2 years will be offered to the successful
candidate starting on 1st May 2006.
found at www.ucl.ac.uk/mediares/support/jobs.htm
For details, please contact Mr Kunze@iwr.fzk.de.
Please send applications to Mrs Maeurer@hps.fzk.de
NGS Executive Director
Reference Number: 136/2006
A vacancy has arisen for a full time Executive Director to
oversee the operation and development of the NGS and the
GOSC. This new role will be key to the future operational success of the NGS and the Director will take the lead in developments to integrate the NGS with project and campus based
grid initiatives and the emerging European e-Infrastructure.
If you would like to hold an e-Science event at the
e-Science Institute, please contact:
Conference Administrator, National e-Science Centre, 15
South College Street, Edinburgh, EH8 9AA
Tel: 0131 650 9833 / Fax: 0131 650 9819 / Email:
events@nesc.ac.uk
For more information contact Neil Geddes on +44 1235
446084, or email N.I.Geddes@rl.ac.uk.
NeSC News
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